- Transcript 'NCBI:KH.XM_002123976...' >
- Transcript 'KH2012:KH.C3.742.v1....' >
- Transcript 'Cisavi.CG.ENS81.R14....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R14.1028656-1037772.18301.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R14 [1,029,005 / 1,037,743]
Amino acid sequence
Length: 915
>Cisavi.CG.ENS81.R14.1028656-1037772.18301.p
PLRLDIKRKLNARSDRVKCVDLHPTEPWMLVSLYNGNVHIWNHETQVLVKSFEICDLPVR
ATRFVPRKNWVITGSDDMQVRVFNYNTLERTHAFEAHTDYIRSIAVHPTQPYILTSSDDM
LIKLWDWDKKWSCAQVFEGHTHYVMQIVINPKDNNQFASASLDCSIKVWQLGSATPNFTL
TGHDKGVNCVDYYSGGDKPYLISGADDRLTKIWDYQNKTCVQTLEGHSQNIVCVSFHPEL
PIIMTGSEDGTIKIWHANTYRLETTLNYGMERVWCISAMKGSNNIALGYDEGSIMIKLGR
EEPAMSMDGSGKIIWAKHSEIQQANLKAMADQDLKDGERLQLSVKDMGSCEVYPQTLKHN
ANGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWAQDSSEYAVRESGTSVKLFKNFKER
KSFKPDFGAEGIFGGHLLGVRTSQGLAFYDWEHLELVRRIEINPKNVFWSDNGDLVCITA
DESFYILKYDQSKIEESKENTDLVTEDGITDAFSDDIGEVEEVVKTGLWVGDCFIYTNAV
NRLNYYVGGEIVTIAHLDRVLYLLGYIPSDNRLYLGDKELNVVSYSLLLSVLEYQTAVMR
EDFETADKVLPSIPKEQRTRVAHFLEKQGFKPQAMAVTSDSEHKFELALGLGDLKIAYQL
AQEAQAEQKWKQLAELATRKCEFGLAQECLRQAQDFGGLLLLATSAGNSTMVKSLADNAK
AGGKNNVAFLSYFVTGQTDKCLELLISTNRLPEAAFFARTYLPSQVSRVVQLWKVNLGES
NKKAADALADPAKYENLFPNLAESLVAEKYLAATEERRPASHYPVTPVNDERNVLEESAG
FDPGEAEQMIEESPPAIEQEEEEDCPKVIPQDEQVPQAPSSLDEYDDLELDIENLELDDD
IDTSGVNLDDELLED
Nucleotide sequence
Length: 3,137
>Cisavi.CG.ENS81.R14.1028656-1037772.18301.t
CCTTTACGCTTGGACATTAAGAGGAAATTAAATGCGAGGTCGGATCGAGTGAAATGTGTT
GATCTCCATCCAACTGAGCCATGGATGTTAGTTTCACTTTACAATGGTAATGTTCACATT
TGGAACCATGAAACTCAAGTCTTGGTCAAATCTTTTGAAATATGTGATCTTCCTGTCAGA
GCCACCCGTTTCGTTCCTCGTAAAAACTGGGTGATCACTGGTTCGGATGACATGCAAGTT
CGTGTGTTTAACTACAACACGCTGGAGCGAACCCACGCATTTGAAGCGCACACAGATTAC
ATCCGTTCTATCGCTGTGCATCCGACACAGCCTTATATATTAACCAGCAGTGACGACATG
CTGATAAAATTATGGGATTGGGACAAGAAATGGAGCTGTGCACAAGTGTTTGAAGGCCAC
ACACACTATGTCATGCAAATTGTCATCAATCCAAAAGATAACAATCAATTTGCAAGTGCT
TCTCTTGACTGCAGCATCAAAGTTTGGCAGCTTGGTTCTGCAACACCAAATTTTACACTA
ACAGGACATGATAAAGGCGTCAATTGCGTGGACTACTACAGTGGGGGAGACAAGCCATAC
CTCATATCTGGAGCTGATGACAGACTTACAAAGATTTGGGACTACCAGAACAAGACATGT
GTTCAGACACTAGAGGGACACTCACAGAACATTGTGTGCGTCAGCTTTCACCCTGAGCTA
CCAATCATTATGACTGGCTCTGAAGATGGCACTATTAAGATTTGGCATGCGAATACCTAC
CGTCTTGAAACCACACTTAACTATGGCATGGAACGTGTGTGGTGCATATCTGCTATGAAG
GGTTCAAACAACATTGCGCTTGGATATGATGAAGGAAGTATAATGATTAAGCTTGGCAGG
GAAGAGCCAGCTATGTCCATGGATGGCAGTGGAAAGATCATATGGGCCAAGCACTCTGAG
ATACAACAAGCCAATTTGAAAGCAATGGCTGACCAGGACCTGAAGGATGGGGAGAGATTG
CAGCTATCTGTGAAAGACATGGGTAGTTGTGAGGTTTATCCACAAACACTGAAGCACAAT
GCAAATGGAAGATTCGTGGTGGTTTGTGGCGATGGGGAATACATCATATACACTGCTATG
GCGCTGAGGAACAAAGCATTTGGTTCGGCTCTCGAGTTTACATGGGCGCAAGATTCATCA
GAGTATGCTGTGAGAGAAAGTGGCACTTCCGTTAAGCTGTTCAAGAATTTTAAAGAGAGA
AAATCATTCAAGCCTGACTTCGGGGCGGAAGGAATCTTTGGGGGTCATTTGCTTGGGGTT
CGAACCTCGCAGGGGCTTGCTTTCTATGACTGGGAGCATCTTGAACTTGTCCGCAGGATT
GAGATCAACCCCAAAAATGTGTTTTGGTCGGACAACGGGGACCTGGTTTGCATCACCGCA
GACGAATCGTTCTACATCCTCAAATACGATCAATCCAAGATCGAAGAATCGAAGGAAAAC
ACCGACCTTGTTACAGAGGATGGTATCACTGATGCATTTAGCGATGACATCGGAGAGGTG
GAAGAAGTAGTGAAGACTGGTTTGTGGGTGGGTGATTGCTTCATATACACCAACGCGGTG
AATCGACTGAACTACTATGTTGGTGGGGAGATTGTCACCATCGCTCATTTGGACAGAGTT
CTGTATTTGCTGGGCTACATTCCAAGTGATAATCGACTGTACCTTGGCGACAAGGAGCTC
AATGTGGTGAGTTACTCCTTGCTGCTGTCCGTCCTTGAATACCAAACTGCGGTGATGAGG
GAGGATTTCGAGACGGCTGATAAAGTTCTTCCTTCCATTCCTAAAGAGCAGAGGACCAGA
GTCGCTCACTTCCTCGAGAAACAGGGATTCAAACCTCAAGCGATGGCCGTGACCAGCGAC
TCGGAACATAAATTTGAACTCGCTCTTGGATTGGGTGACCTCAAAATAGCATACCAACTT
GCACAAGAAGCCCAGGCCGAACAAAAGTGGAAGCAGCTTGCAGAGCTGGCAACCCGGAAA
TGTGAATTTGGATTAGCGCAGGAGTGTCTTCGACAGGCACAGGATTTCGGTGGCTTGTTG
TTATTAGCCACATCTGCAGGAAATTCCACCATGGTCAAATCTCTTGCTGATAATGCCAAA
GCTGGAGGCAAAAACAACGTTGCTTTCCTGAGTTACTTTGTCACTGGTCAAACTGACAAG
TGCCTTGAACTCTTAATCAGCACCAACCGACTTCCTGAAGCTGCCTTTTTCGCACGAACT
TATTTACCCAGTCAAGTCAGCAGAGTGGTGCAACTGTGGAAGGTGAACCTGGGTGAATCG
AACAAGAAAGCTGCTGATGCACTTGCTGATCCGGCCAAATATGAAAATTTGTTTCCCAAT
CTCGCTGAGAGTTTGGTTGCAGAGAAATATCTTGCTGCTACTGAAGAACGGAGACCTGCT
TCCCACTACCCAGTCACTCCAGTCAATGATGAGAGGAATGTTCTGGAAGAATCTGCAGGT
TTCGATCCCGGTGAGGCAGAGCAGATGATTGAGGAGAGCCCACCTGCTATAGAGCAAGAA
GAAGAGGAGGATTGCCCCAAAGTGATTCCGCAAGATGAACAGGTGCCCCAGGCTCCCTCA
AGCTTGGACGAATATGACGACCTTGAACTTGACATTGAGAACTTGGAGTTGGACGATGAT
ATTGATACAAGTGGAGTTAATTTGGATGACGAACTTTTAGAAGATTAAACTTAAACTCAT
CGTCTTATTTATATTACGTAGAAGCGCTTAACATTTTGTTTATGACTGAGCTATCACTCT
CGTGATACTTTTGGACCAGTGTGAGGAATTGGGTCGTTATGTAAGAAATTGATCCCATAT
TTACTCTTGTTGCGCAATAATCTATGGTTTGCAAGTTGCATATTGGCAGGAAGCTAGTAT
ATTGTACATAAAACTTCCTATTGTACCTTGCCTTAATATGCTTTGAAGTGAAAACGCTTA
AAATTTTGACGGATTCAACATTTAGCCCACTTGTATTAAAATTTAAACCTTGCAGCAATT
GTGCAATATCCACACTCTGAAACAACTTCTATTTCAGTTAGTAAATGGTTGTAGCTTTAA
TGTGGCGATTTAATGGT
| PIRSF |
COPB2 (IPR016453) - T[1-880] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-296] 6.5E-80 |
| SMART |
WD40_repeat (IPR001680) - T[3-42] 0.1 - T[45-84] 0.031 - T[87-126] 1.8E-8 - T[130-170] 1.2E-7 - T[173-214] 2.8E-6 - T[217-256] 8.5E-11 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[10-299] 1.2E-108 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[10-265] 49.645 |
| Pfam |
WD40_repeat (IPR001680) - T[59-84] 0.26 - T[91-126] 2.6E-5 - T[131-169] 0.021 - T[176-214] 2.8E-5 - T[219-255] 4.7E-9 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[94-126] 13.55 - T[137-179] 11.31 - T[180-223] 12.146 - T[224-265] 16.223 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[113-127] 6.2E-5 - T[201-215] 6.2E-5 - T[243-257] 6.2E-5 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[318-762] 5.6E-167 |
| SUPERFAMILY |
Quino_amine_DH_bsu (IPR011044) - T[336-585] 2.2E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 25.984 % | 246 | 8.93E-68 |
| COPB2_HUMAN | 72.876 % | 1440 | 0 |
| LIS1_HUMAN | 24.731 % | 111 | 5.45E-26 |