- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04412.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,529 / 1,586,009]
Amino acid sequence
Length: 1,263
>Cisavi.CG.ENS81.R143.1552530-1586469.04412.p
IPGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPGEKGLPGPPGRHIMIPLAM
QGPPGPQGLAGMPGTAVSSLFGDMGPAGIKGESGEPGPMGQRGPRGSMGPDGMPGKPGRV
GEDGLRGEPGAMGSKGDRGYDGLPGLPGPKGHVGPIGPPGGDGEQGEQGEAGPRGLPGEA
GPRGEMGHKGPPGVSGPPGPQGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLP
GIPGADGAPGHPGNEGPTGSKGSQGQPGPQGPQGYPGTRGGENGVRGIKGNKGEKGLDGL
PGFKGDMGPKGDTGIAGPTGSRGEDGPEGPKGREGARGELGPVGLTGEKGKIGVPGLPGY
PGRSGIKGSLGKPGKPGQMGLKGDRGSRGLIGRPGLRGLKGKRGLEGKRGQEGQRGPKGP
RGKRGPRGSTGKAGPKGPPGPRGPSGYVGTKGPPGPPGKDGLPGHPGSRGETGFQGKTGP
PGPAGVVGPQGPTGENGPSGNRGHPGPPGPAGEPGLSGSAGKEGSKGDRGPRGPIGKMGA
TGSQGFPGSRGANGPPGPQGENGSPGGPGGPGPAGRDGLQGPVGLPGAPGSIGPRGEDGD
KGEAGPPGATGLKGGKGEHGPPGPPGVQGNSGDPGPPGNDGEPGQRGQQGLYGEKGDEGP
RGFPGPPGPRGLQGIPGPSGSKGDTGDAGPLGPPGPAGQRGPPGGPPGTYGQPGNVGDKG
EPGGPGAPGISGEPGPMGPKGENGEKGEAGLTGPQGEAGPRGPRGDDGPKGNPGPVGFPG
DPGVSGIPGTPGDEGVPGDVGDTGAPGEPGPPGPSGEVGPSGGPGRRGPAGPAGAEGRPG
EKGAKVNFYFQGESGGIGPVGEPGPHGLQGKTGKRGTTGLQGLPGPAGAPGLPGSSGADG
PVGPMGPSGLKGIKGEMGVSGEKGHPGLIGLVGPPGEEGEKGERGPQGRDGPHGAKGDDG
RPGPSGPVGPMGAPGLPGSLGSKGNKGSLGPTGPKGDEGIQGPPGPPGPPGQVYNASPLT
ANSMKARRRRDESFIEYPEGLEEIYAAMETLKQELEMMKEPMGRTQDNPGRSCKDIWLCH
PDFPSGNYWIDPNGGCSADAIEVFCDFEAEGDTCISPVERTASVTKRWPKAQPGDWFSSY
RMGDRFEYNTSIPQFNFLRLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAIHLLAANDEV
LTYGSEHLTVIEDNCKTGHGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQRHGYQLDRV
CFS
Nucleotide sequence
Length: 4,094
>Cisavi.CG.ENS81.R143.1552530-1586469.04412.t
ATTCCTGGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAA
GGGCCACCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGAGATGGGCTT
CCCGGCGAAAAAGGGCTTCCTGGGCCACCTGGTCGACACATTATGATACCGTTGGCGATG
CAAGGGCCACCCGGGCCGCAGGGTCTTGCTGGAATGCCCGGCACAGCAGTGAGTTCCTTA
TTCGGTGATATGGGGCCAGCTGGGATAAAGGGTGAATCAGGGGAACCAGGTCCAATGGGC
CAAAGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCTGGAAGAGTG
GGGGAAGACGGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGACAGAGGTTAT
GATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCACGTTGGTCCAATCGGACCACCAGGT
GGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCACGTGGTTTACCTGGTGAAGCG
GGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGCGTATCCGGCCCACCTGGCCCA
CAAGGCGAACCGGGCCCCCCAGGCCAACAAGGCACATCCGGGCCACAGGGTATTCCCGGC
CCACAAGGTATGATGGGACCACCTGGCACCAAAGGGCCTCACGGCAAAGCCGGCTTACCT
GGCATACCGGGCGCAGACGGCGCACCCGGGCACCCGGGTAACGAAGGTCCCACTGGCAGC
AAAGGTTCCCAGGGTCAACCTGGGCCACAAGGACCACAAGGCTACCCTGGAACACGAGGT
GGAGAAAATGGAGTCAGAGGTATCAAGGGAAACAAAGGAGAGAAAGGTCTTGATGGGTTA
CCAGGATTCAAAGGGGATATGGGTCCTAAGGGTGACACGGGAATTGCGGGGCCAACAGGC
TCAAGAGGAGAAGACGGCCCAGAAGGACCCAAGGGAAGAGAAGGGGCACGTGGAGAACTG
GGTCCAGTCGGTCTCACTGGCGAAAAGGGTAAAATCGGAGTTCCCGGTCTTCCTGGCTAT
CCTGGTCGATCTGGAATCAAGGGGTCGCTTGGAAAGCCTGGTAAACCGGGGCAGATGGGG
CTGAAAGGGGACCGGGGGTCGAGGGGGCTTATTGGACGGCCCGGACTTAGGGGTCTAAAG
GGAAAGAGGGGTTTAGAAGGCAAACGAGGCCAAGAAGGTCAAAGAGGTCCGAAGGGACCC
AGAGGCAAACGGGGTCCTAGAGGATCAACTGGCAAAGCAGGACCCAAGGGGCCGCCTGGA
CCCAGAGGACCAAGTGGGTACGTTGGCACCAAAGGGCCACCGGGTCCACCAGGGAAAGAC
GGGCTTCCAGGACATCCAGGAAGTCGTGGAGAAACTGGATTCCAAGGCAAGACGGGGCCA
CCTGGACCAGCCGGCGTCGTCGGCCCACAGGGACCAACCGGCGAAAACGGGCCTTCCGGT
AACAGAGGACACCCAGGGCCGCCTGGACCAGCTGGCGAACCTGGCCTTTCCGGCTCCGCG
GGCAAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGACCCATAGGAAAAATGGGGGCA
ACTGGATCGCAGGGTTTCCCTGGGTCTAGGGGCGCTAATGGGCCACCGGGGCCGCAGGGT
GAGAACGGGAGCCCGGGTGGGCCAGGAGGTCCGGGCCCAGCAGGCCGAGATGGTCTGCAG
GGGCCTGTGGGGCTTCCAGGCGCACCGGGATCCATCGGGCCACGCGGCGAAGATGGTGAC
AAGGGCGAAGCTGGGCCTCCTGGTGCAACCGGCCTCAAAGGTGGAAAGGGCGAGCACGGG
CCACCTGGGCCGCCCGGCGTACAAGGAAACAGCGGCGATCCTGGCCCACCGGGTAACGAC
GGAGAGCCAGGTCAAAGGGGTCAGCAAGGTTTATACGGCGAAAAGGGTGATGAGGGACCC
AGGGGATTTCCCGGTCCACCAGGACCCCGCGGTTTGCAGGGGATTCCCGGGCCGTCAGGA
AGCAAAGGAGATACCGGTGACGCTGGGCCCTTGGGGCCACCTGGACCGGCTGGACAACGA
GGCCCCCCTGGTGGGCCACCTGGTACGTATGGTCAACCCGGCAACGTCGGCGACAAGGGT
GAACCTGGCGGACCCGGCGCTCCTGGAATTTCTGGTGAACCTGGACCCATGGGACCAAAA
GGAGAAAACGGCGAAAAGGGTGAAGCAGGTCTCACGGGGCCACAGGGCGAAGCTGGGCCT
CGAGGGCCACGCGGCGACGACGGACCCAAAGGAAATCCTGGTCCAGTTGGTTTCCCTGGC
GACCCCGGCGTATCTGGTATTCCTGGAACCCCCGGAGACGAAGGAGTTCCCGGAGATGTT
GGAGACACTGGAGCACCTGGCGAACCTGGGCCACCCGGACCAAGTGGCGAAGTGGGGCCA
TCCGGCGGACCAGGAAGACGCGGTCCTGCTGGTCCCGCTGGTGCAGAAGGTCGACCTGGT
GAAAAGGGGGCCAAGGTTAATTTTTATTTTCAGGGCGAAAGCGGCGGAATCGGCCCCGTC
GGCGAACCCGGGCCTCATGGGCTTCAAGGAAAAACTGGAAAGAGAGGAACAACTGGACTT
CAAGGTCTTCCTGGCCCAGCTGGCGCTCCTGGTCTACCTGGCAGTTCTGGCGCAGACGGA
CCGGTTGGCCCCATGGGACCATCTGGTTTGAAAGGAATCAAGGGAGAAATGGGCGTTTCT
GGTGAAAAGGGTCACCCCGGTCTCATCGGGCTGGTCGGCCCCCCTGGGGAAGAGGGTGAG
AAGGGTGAACGCGGTCCACAGGGCCGCGATGGTCCACATGGAGCCAAGGGTGACGACGGC
AGACCCGGGCCATCCGGACCCGTTGGGCCAATGGGCGCACCCGGCTTACCGGGAAGCCTT
GGTTCAAAGGGAAACAAAGGAAGTCTGGGACCCACGGGACCTAAAGGAGACGAAGGTATC
CAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTGTACAACGCGTCCCCACTAACT
GCGAATTCCATGAAGGCTCGAAGAAGAAGAGACGAGAGTTTCATCGAGTACCCCGAAGGC
CTTGAGGAAATCTACGCGGCGATGGAAACGCTCAAACAGGAACTTGAAATGATGAAGGAA
CCCATGGGGAGGACCCAGGATAACCCTGGGAGGAGCTGCAAGGATATCTGGCTCTGTCAC
CCCGATTTCCCGTCAGGCAACTACTGGATTGATCCGAACGGAGGGTGTTCTGCGGATGCC
ATCGAAGTTTTCTGCGATTTCGAGGCGGAAGGCGACACTTGCATCTCACCAGTTGAGCGA
ACCGCAAGTGTAACCAAGCGATGGCCGAAAGCACAACCTGGTGATTGGTTTAGCTCCTAC
AGGATGGGCGACAGGTTTGAATACAACACTAGCATCCCGCAATTCAACTTCCTGCGGTTG
CTATCGTCGCAAGCGAAGCAAAGATTCACCTACAAGTGCGTCAACTCTATCGGCTGGGAG
AACCAACAAACCGGTAGCTTCGACCAAGCCATCCACTTGCTTGCTGCTAACGATGAGGTT
CTGACTTACGGTAGCGAACATCTTACGGTGATTGAGGATAACTGCAAGACCGGCCACGGA
AATGGACAGGTGGTTCTAGAACTCCGTACGCGTGAGGTCGACCTCCTACCATTGTTCGAT
TACAAAGCTTTCGACTTTGGTACCCGCTCCCAACGACACGGATACCAACTCGATCGCGTT
TGTTTTAGCGGATGAATATAATCATGTCTTCACGAGCCACGTTTTGACGGGTGGCGCGCG
CCGCCGCACGGCTTCAGCGCCCGATCGGCGCGCTTATAAAGGAGAAGGGGTCTTCCCACA
AGTGCTGGTGCGGGAGCGCTCCCTCTCTTCTCGACGGATCCGGGAAAAAATACGAGAGAA
GTCACGTGACCGCGGCGTCGTGTGTGCTGGCTCGACCCCGGCGTCACGCGGCCTCTCTCG
TCCAACCAAATTTTTCAGTGGGAAGCAAAGGCTGTGACGTCATCAGTATTACGTATTGCA
TCACTGTTTGTTCG
| Pfam |
Collagen (IPR008160) - T[3-51] 3.6E-8 - T[647-705] 7.1E-8 - T[788-844] 5.4E-7 - T[852-907] 5.2E-7 - T[906-964] 3.8E-7 - T[954-1012] 1.3E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1041-1263] 1.3E-74 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1042-1263] 73.553 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1042-1262] 2.0E-70 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1157-1262] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 53.107 % | 689 | 0 |
| COBA1_HUMAN | 55.325 % | 670 | 0 |
| CO5A3_HUMAN | 49.127 % | 637 | 0 |