- Transcript 'Cisavi.CG.ENS81.R143...' >
- Transcript 'Cisavi.CG.ENS81.R143...' >
- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04415.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,556 / 1,586,469]
Amino acid sequence
Length: 1,366
>Cisavi.CG.ENS81.R143.1552530-1586469.04415.p
QGQKGAKGEQAVVEPGIFIPGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPG
EKGLPGPPGRHIMIPFRIAQPNGEKGPGSNAPAEMQAQLALTQARLAMQGPPGPQGLAGM
PGTAGDMGPAGIKGESGEPGPMGQRGPRGSMGPDGMPGKPGRVGEDGLRGEPGAMGSKGD
RGYDGLPGLPGPKGHRVSHVGPIGPPGGDGEQGEQGEAGPRGLPGEAGPRGEMGHKGPPG
VSGPPGPRGVHGQQGPKGNLGPQGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAG
LPGIPGADGAPGHPGNEGPTGSKGSQGQPGPQGPQGYPGTRGVKGENGVRGIKGNKGEKG
LDGLPGFKGDMGPKGDTGIAGPTGSRGEDGPEGPKGREGARGELGPVGLTGEKGKIGVPG
LPGYPGRSGIKGSLGKPGKPGQMGLKGDRGLEGKRGQEGQRGPKGPRGKRGPRGSTGKAG
PKGDRGQDGPQGPIGERGPPGPRGPSGYVGTKGPPGPPGKDGLPGHPGSRGETGFQGKTG
PPGPAGVVGPQGPTGENGPSGNRGHPGPPGPAGEPGLSGSAGKEGSKGDRGPRGPIGKMG
ATGSQGFPGSRGPQGPVGAPGLKGSEGPPGPPGPLGAVGQRGPQGPAGQIGPAGSANGPP
GPQGENGSPGGPGGPGPAGRDGLQGPVGLPGAPGSIGPRGEDGDKGEAGPPGATGLKGGK
GEHGPPGPPGVQGNSGDPGPPGNDGEPGQRGQQGLYGEKGDEGPRGFPGPPGPRGLQGIP
GPSGSKGDTGDAGPLGPPGPAGQRGPPGGPEGPPGTYGQPGNVGDKGEPGGPGAPGISGE
PGPMGPKGENGEKGEAGLTGPQGEAGPRGPRGDDGPKGNPGPVGFPGDPGVSGIPGTPGD
EGVPGDVGDTGAPGEPGPPGPSGEVGPSGGPGRRGPAGPAGAEGRPGEKGAKGESGGIGP
VGEPGPHGLQGKTGKRGTTGLQGLPGPAGAPGLPGSSGADGPVGPMGPSGLKGIKGEMGV
SGEKGHPGLIGLVGPPGEEGEKGERGPQGRDGPHGAKGDDGRPGPSGPVGPMGAPGLPGS
LGSKGNKGSLGPTGPKGDEGIQGPPGPPGPPGQVYNASPLTANSMKARRRRSTEEEGLHR
EKRQAQDESFIEYPEGLEEIYAAMETLKQELEMMKEPMGRTQDNPGRSCKDIWLCHPDFP
SGNYWIDPNGGCSADAIEVFCDFEAEGDTCISPVERTASVSWLTCLSDPPLVCIPQFNFL
RLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAIHLLAANDEVLTYGSEHLTVIEDNCKTG
HGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQRHGYQLDRVCFSG
Nucleotide sequence
Length: 4,373
>Cisavi.CG.ENS81.R143.1552530-1586469.04415.t
CAGGGCCAAAAAGGCGCAAAGGGTGAACAAGCAGTTGTAGAACCGGGGATATTTATTCCT
GGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAAGGGCCA
CCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGAGATGGGCTTCCCGGC
GAAAAAGGGCTTCCTGGGCCACCTGGTCGACACATTATGATACCGTTCCGAATCGCTCAA
CCCAATGGAGAAAAAGGACCCGGGTCAAATGCACCAGCTGAAATGCAAGCACAGCTTGCT
TTAACCCAAGCTAGGTTGGCGATGCAAGGGCCACCCGGGCCGCAGGGTCTTGCTGGAATG
CCCGGCACAGCAGGTGATATGGGGCCAGCTGGGATAAAGGGTGAATCAGGGGAACCAGGT
CCAATGGGCCAAAGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCT
GGAAGAGTGGGGGAAGACGGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGAC
AGAGGTTATGATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCATCGGGTGAGTCACGTT
GGTCCAATCGGACCACCAGGTGGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCA
CGTGGTTTACCTGGTGAAGCGGGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGC
GTATCCGGCCCACCTGGCCCGAGAGGAGTCCATGGGCAACAAGGACCTAAAGGAAATCTG
GGCCCACAAGGCGAACCGGGCCCCCCAGGCCAACAAGGCACATCCGGGCCACAGGGTATT
CCCGGCCCACAAGGTATGATGGGACCACCTGGCACCAAAGGGCCTCACGGCAAAGCCGGC
TTACCTGGCATACCGGGCGCAGACGGCGCACCCGGGCACCCGGGTAACGAAGGTCCCACT
GGCAGCAAAGGTTCCCAGGGTCAACCTGGGCCACAAGGACCACAAGGCTACCCTGGAACA
CGAGGTGTTAAAGGAGAAAATGGAGTCAGAGGTATCAAGGGAAACAAAGGAGAGAAAGGT
CTTGATGGGTTACCAGGATTCAAAGGGGATATGGGTCCTAAGGGTGACACGGGAATTGCG
GGGCCAACAGGCTCAAGAGGAGAAGACGGCCCAGAAGGACCCAAGGGAAGAGAAGGGGCA
CGTGGAGAACTGGGTCCAGTCGGTCTCACTGGCGAAAAGGGTAAAATCGGAGTTCCCGGT
CTTCCTGGCTATCCTGGTCGATCTGGAATCAAGGGGTCGCTTGGAAAGCCTGGTAAACCG
GGGCAGATGGGGCTGAAAGGGGACCGGGGTTTAGAAGGCAAACGAGGCCAAGAAGGTCAA
AGAGGTCCGAAGGGACCCAGAGGCAAACGGGGTCCTAGAGGATCAACTGGCAAAGCAGGA
CCCAAGGGCGACAGAGGACAAGACGGGCCGCAAGGACCAATCGGAGAACGGGGGCCGCCT
GGACCCAGAGGACCAAGTGGGTACGTTGGCACCAAAGGGCCACCGGGTCCACCAGGGAAA
GACGGGCTTCCAGGACATCCAGGAAGTCGTGGAGAAACTGGATTCCAAGGCAAGACGGGG
CCACCTGGACCAGCCGGCGTCGTCGGCCCACAGGGACCAACCGGCGAAAACGGGCCTTCC
GGTAACAGAGGACACCCAGGGCCGCCTGGACCAGCTGGCGAACCTGGCCTTTCCGGCTCC
GCGGGCAAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGACCCATAGGAAAAATGGGG
GCAACTGGATCGCAGGGTTTCCCTGGGTCTAGGGGTCCACAGGGACCAGTGGGTGCTCCA
GGCTTAAAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCATTGGGCGCTGTCGGACAA
CGAGGGCCACAAGGACCCGCCGGGCAGATCGGACCAGCTGGAAGCGCTAATGGGCCACCG
GGGCCGCAGGGTGAGAACGGGAGCCCGGGTGGGCCAGGAGGTCCGGGCCCAGCAGGCCGA
GATGGTCTGCAGGGGCCTGTGGGGCTTCCAGGCGCACCGGGATCCATCGGGCCACGCGGC
GAAGATGGTGACAAGGGCGAAGCTGGGCCTCCTGGTGCAACCGGCCTCAAAGGTGGAAAG
GGCGAGCACGGGCCACCTGGGCCGCCCGGCGTACAAGGAAACAGCGGCGATCCTGGCCCA
CCGGGTAACGACGGAGAGCCAGGTCAAAGGGGTCAGCAAGGTTTATACGGCGAAAAGGGT
GATGAGGGACCCAGGGGATTTCCCGGTCCACCAGGACCCCGCGGTTTGCAGGGGATTCCC
GGGCCGTCAGGAAGCAAAGGAGATACCGGTGACGCTGGGCCCTTGGGGCCACCTGGACCG
GCTGGACAACGAGGCCCCCCTGGTGGACCTGAGGGGCCACCTGGTACGTATGGTCAACCC
GGCAACGTCGGCGACAAGGGTGAACCTGGCGGACCCGGCGCTCCTGGAATTTCTGGTGAA
CCTGGACCCATGGGACCAAAAGGAGAAAACGGCGAAAAGGGTGAAGCAGGTCTCACGGGG
CCACAGGGCGAAGCTGGGCCTCGAGGGCCACGCGGCGACGACGGACCCAAAGGAAATCCT
GGTCCAGTTGGTTTCCCTGGCGACCCCGGCGTATCTGGTATTCCTGGAACCCCCGGAGAC
GAAGGAGTTCCCGGAGATGTTGGAGACACTGGAGCACCTGGCGAACCTGGGCCACCCGGA
CCAAGTGGCGAAGTGGGGCCATCCGGCGGACCAGGAAGACGCGGTCCTGCTGGTCCCGCT
GGTGCAGAAGGTCGACCTGGTGAAAAGGGGGCCAAGGGCGAAAGCGGCGGAATCGGCCCC
GTCGGCGAACCCGGGCCTCATGGGCTTCAAGGAAAAACTGGAAAGAGAGGAACAACTGGA
CTTCAAGGTCTTCCTGGCCCAGCTGGCGCTCCTGGTCTACCTGGCAGTTCTGGCGCAGAC
GGACCGGTTGGCCCCATGGGACCATCTGGTTTGAAAGGAATCAAGGGAGAAATGGGCGTT
TCTGGTGAAAAGGGTCACCCCGGTCTCATCGGGCTGGTCGGCCCCCCTGGGGAAGAGGGT
GAGAAGGGTGAACGCGGTCCACAGGGCCGCGATGGTCCACATGGAGCCAAGGGTGACGAC
GGCAGACCCGGGCCATCCGGACCCGTTGGGCCAATGGGCGCACCCGGCTTACCGGGAAGC
CTTGGTTCAAAGGGAAACAAAGGAAGTCTGGGACCCACGGGACCTAAAGGAGACGAAGGT
ATCCAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTGTACAACGCGTCCCCACTA
ACTGCGAATTCCATGAAGGCTCGAAGAAGAAGATCTACAGAAGAAGAGGGACTTCACCGT
GAGAAGCGTCAAGCTCAAGACGAGAGTTTCATCGAGTACCCCGAAGGCCTTGAGGAAATC
TACGCGGCGATGGAAACGCTCAAACAGGAACTTGAAATGATGAAGGAACCCATGGGGAGG
ACCCAGGATAACCCTGGGAGGAGCTGCAAGGATATCTGGCTCTGTCACCCCGATTTCCCG
TCAGGCAACTACTGGATTGATCCGAACGGAGGGTGTTCTGCGGATGCCATCGAAGTTTTC
TGCGATTTCGAGGCGGAAGGCGACACTTGCATCTCACCAGTTGAGCGAACCGCAAGTGTA
AGTTGGTTGACCTGTCTATCTGATCCACCTTTGGTCTGCATCCCGCAATTCAACTTCCTG
CGGTTGCTATCGTCGCAAGCGAAGCAAAGATTCACCTACAAGTGCGTCAACTCTATCGGC
TGGGAGAACCAACAAACCGGTAGCTTCGACCAAGCCATCCACTTGCTTGCTGCTAACGAT
GAGGTTCTGACTTACGGTAGCGAACATCTTACGGTGATTGAGGATAACTGCAAGACCGGC
CACGGAAATGGACAGGTGGTTCTAGAACTCCGTACGCGTGAGGTCGACCTCCTACCATTG
TTCGATTACAAAGCTTTCGACTTTGGTACCCGCTCCCAACGACACGGATACCAACTCGAT
CGCGTTTGTTTTAGCGGATGAATATAATCATGTCTTCACGAGCCACGTTTTGACGGGTGG
CGCGCGCCGCCGCACGGCTTCAGCGCCCGATCGGCGCGCTTATAAAGGAGAAGGGGTCTT
CCCACAAGTGCTGGTGCGGGAGCGCTCCCTCTCTTCTCGACGGATCCGGGAAAAAATACG
AGAGAAGTCACGTGACCGCGGCGTCGTGTGTGCTGGCTCGACCCCGGCGTCACGCGGCCT
CTCTCGTCCAACCAAATTTTTCAGTGGGAAGCAAAGGCTGTGACGTCATCAGT
| Pfam |
Collagen (IPR008160) - T[21-69] 3.9E-8 - T[109-161] 4.7E-8 - T[140-195] 7.5E-9 - T[201-258] 8.1E-8 - T[558-615] 1.2E-6 - T[860-914] 5.6E-7 - T[960-1017] 7.5E-8 - T[1010-1065] 2.3E-7 - T[1055-1113] 2.0E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1157-1365] 1.4E-64 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1158-1238] 3.6E-30 - T[1254-1364] 7.2E-29 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1158-1365] 65.49 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1259-1364] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 59.012 % | 801 | 0 |
| COBA1_HUMAN | 60.702 % | 736 | 0 |
| CO5A3_HUMAN | 53.169 % | 704 | 0 |