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  1. Clone 'cign045h08' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  3. Transcript 'Cisavi.CG.ENS81.R143...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R143.1552530-1586469.04419.t

Possible name(s)

COL11A2

Gene model

Cisavi.CG.ENS81.R143.1552530-1586469

Location

R143 [1,552,779 / 1,586,006]

Sequences

Amino acid sequence

Length: 1,269

>Cisavi.CG.ENS81.R143.1552530-1586469.04419.p
PGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRLAMQGPPGPQGLAGMPGTAGESGEPGPMG
QRGPRGSMGPDGMPGKPGRVGEDGLRGEPGAMGSKGDRGYDGLPGLPGPKGHVGPIGPPG
GDGEQGEQGEAGPRGLPGEAGPRGEMGHKGPPGVSGPPGPRGVHGQQGPKGNLVSLNYYF
YPFLSFQGPQGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLPGIPGADGAPGH
PGNEGPTGSKGSQGLDGLPGFKGDMGPKGDTGIAGPTGSRGEDGPEGPKGREGARGELGP
VGLTGEKGKIGVPGLPGYPGRSGIKGSLGKPGKPGQMGLKGDRGSRGLIGRPGLRGLKGK
RGLEGKRGQEGQRGPKGPRGKRGPRGSTGKAGPKVNRKMGIFPGPPGPRGPSGYVGTKGP
PGPPGKDGLPGHPGSKTGPPGPAGVVGPQGPTGENGPSGNRGHPGPPGPAGEPGLSGSAG
KEGSKGDRGPRGPIGKMGATGSQGFPGSRGPQGPVGAPGLKGSEGPPGPPGPLGAVGQRG
PQGPAGQIGPAGSANGPPGPQGENGSPGGPGGPGPAGRDGLQGPVGLPGAPGSIGPRGED
GDKGEAGPPGATGLKGGKGEHGPPGPPGVQGNSGDPGPPGNDGEPGQRGQQGLYGEKGDE
GPRGFPGPPGPRGLQGIPGPSGSKGDTGDAGPLGPPGPAGQRGPPGGPEGPPGTYGQPGN
VGDKGEPGGPGAPGISGEPGPMPHNPFSPTQGPKGENGEKGEAGLTGPQGEAGPRGPRGD
DGPKGNPGPVGFPGDPGVSGIPGTPGDEGVPGDVGDTGAPGEPGPPGPSGEVGPSGGPGR
RGPAGPAGAEGRPGEKGAKGESGGIGPVGEPGPHGLQVCCGKTGKRGTTGLQGLPGPAGA
PGLPGSSGADGPVGPMGPSGLKGIKGEMGVSGEKGHPGLIGLVGPPGEEGEKGERGPQGR
DGPHGAKGDDGRPGPSGPVGPMGAPGLPGPTGPKGDEGIQGPPGPPGPPGQVYNASPLTA
NSMKARRRRVSLNIFDFFINFFIEYPEGLEEIYAAMETLKQELEMMKEPMGRTQDNPGRS
CKDIWLCHPDFPSGNYWIDPNGGCSADAIEVFCDFEAEGDTCISPVERTASVSWLTSQPG
DWFSSYRMGDRFEYNTSIPQFNFLRLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAIHLL
AANDEVLTYGSEHLTVIEDNCKTGHGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQRHG
YQLDRVCFS

Nucleotide sequence

Length: 3,862

>Cisavi.CG.ENS81.R143.1552530-1586469.04419.t
CCTGGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAAGGG
CCACCGGGAGGACCTGGCGAATATGGCGACCGGTTGGCGATGCAAGGGCCACCCGGGCCG
CAGGGTCTTGCTGGAATGCCCGGCACAGCAGGTGAATCAGGGGAACCAGGTCCAATGGGC
CAAAGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCTGGAAGAGTG
GGGGAAGACGGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGACAGAGGTTAT
GATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCACGTTGGTCCAATCGGACCACCAGGT
GGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCACGTGGTTTACCTGGTGAAGCG
GGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGCGTATCCGGCCCACCTGGCCCG
AGAGGAGTCCATGGGCAACAAGGACCTAAAGGAAATCTGGTGAGTTTAAATTATTATTTT
TACCCATTTCTTTCATTTCAGGGCCCACAAGGCGAACCGGGCCCCCCAGGCCAACAAGGC
ACATCCGGGCCACAGGGTATTCCCGGCCCACAAGGTATGATGGGACCACCTGGCACCAAA
GGGCCTCACGGCAAAGCCGGCTTACCTGGCATACCGGGCGCAGACGGCGCACCCGGGCAC
CCGGGTAACGAAGGTCCCACTGGCAGCAAAGGTTCCCAGGGTCTTGATGGGTTACCAGGA
TTCAAAGGGGATATGGGTCCTAAGGGTGACACGGGAATTGCGGGGCCAACAGGCTCAAGA
GGAGAAGACGGCCCAGAAGGACCCAAGGGAAGAGAAGGGGCACGTGGAGAACTGGGTCCA
GTCGGTCTCACTGGCGAAAAGGGTAAAATCGGAGTTCCCGGTCTTCCTGGCTATCCTGGT
CGATCTGGAATCAAGGGGTCGCTTGGAAAGCCTGGTAAACCGGGGCAGATGGGGCTGAAA
GGGGACCGGGGGTCGAGGGGGCTTATTGGACGGCCCGGACTTAGGGGTCTAAAGGGAAAG
AGGGGTTTAGAAGGCAAACGAGGCCAAGAAGGTCAAAGAGGTCCGAAGGGACCCAGAGGC
AAACGGGGTCCTAGAGGATCAACTGGCAAAGCAGGACCCAAGGTAAATAGAAAAATGGGG
ATTTTCCCTGGGCCGCCTGGACCCAGAGGACCAAGTGGGTACGTTGGCACCAAAGGGCCA
CCGGGTCCACCAGGGAAAGACGGGCTTCCAGGACATCCAGGAAGCAAGACGGGGCCACCT
GGACCAGCCGGCGTCGTCGGCCCACAGGGACCAACCGGCGAAAACGGGCCTTCCGGTAAC
AGAGGACACCCAGGGCCGCCTGGACCAGCTGGCGAACCTGGCCTTTCCGGCTCCGCGGGC
AAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGACCCATAGGAAAAATGGGGGCAACT
GGATCGCAGGGTTTCCCTGGGTCTAGGGGTCCACAGGGACCAGTGGGTGCTCCAGGCTTA
AAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCATTGGGCGCTGTCGGACAACGAGGG
CCACAAGGACCCGCCGGGCAGATCGGACCAGCTGGAAGCGCTAATGGGCCACCGGGGCCG
CAGGGTGAGAACGGGAGCCCGGGTGGGCCAGGAGGTCCGGGCCCAGCAGGCCGAGATGGT
CTGCAGGGGCCTGTGGGGCTTCCAGGCGCACCGGGATCCATCGGGCCACGCGGCGAAGAT
GGTGACAAGGGCGAAGCTGGGCCTCCTGGTGCAACCGGCCTCAAAGGTGGAAAGGGCGAG
CACGGGCCACCTGGGCCGCCCGGCGTACAAGGAAACAGCGGCGATCCTGGCCCACCGGGT
AACGACGGAGAGCCAGGTCAAAGGGGTCAGCAAGGTTTATACGGCGAAAAGGGTGATGAG
GGACCCAGGGGATTTCCCGGTCCACCAGGACCCCGCGGTTTGCAGGGGATTCCCGGGCCG
TCAGGAAGCAAAGGAGATACCGGTGACGCTGGGCCCTTGGGGCCACCTGGACCGGCTGGA
CAACGAGGCCCCCCTGGTGGACCTGAGGGGCCACCTGGTACGTATGGTCAACCCGGCAAC
GTCGGCGACAAGGGTGAACCTGGCGGACCCGGCGCTCCTGGAATTTCTGGTGAACCTGGA
CCCATGCCCCATAACCCCTTTTCACCCACACAGGGACCAAAAGGAGAAAACGGCGAAAAG
GGTGAAGCAGGTCTCACGGGGCCACAGGGCGAAGCTGGGCCTCGAGGGCCACGCGGCGAC
GACGGACCCAAAGGAAATCCTGGTCCAGTTGGTTTCCCTGGCGACCCCGGCGTATCTGGT
ATTCCTGGAACCCCCGGAGACGAAGGAGTTCCCGGAGATGTTGGAGACACTGGAGCACCT
GGCGAACCTGGGCCACCCGGACCAAGTGGCGAAGTGGGGCCATCCGGCGGACCAGGAAGA
CGCGGTCCTGCTGGTCCCGCTGGTGCAGAAGGTCGACCTGGTGAAAAGGGGGCCAAGGGC
GAAAGCGGCGGAATCGGCCCCGTCGGCGAACCCGGGCCTCATGGGCTTCAAGTGTGTTGC
GGAAAAACTGGAAAGAGAGGAACAACTGGACTTCAAGGTCTTCCTGGCCCAGCTGGCGCT
CCTGGTCTACCTGGCAGTTCTGGCGCAGACGGACCGGTTGGCCCCATGGGACCATCTGGT
TTGAAAGGAATCAAGGGAGAAATGGGCGTTTCTGGTGAAAAGGGTCACCCCGGTCTCATC
GGGCTGGTCGGCCCCCCTGGGGAAGAGGGTGAGAAGGGTGAACGCGGTCCACAGGGCCGC
GATGGTCCACATGGAGCCAAGGGTGACGACGGCAGACCCGGGCCATCCGGACCCGTTGGG
CCAATGGGCGCACCCGGCTTACCGGGACCCACGGGACCTAAAGGAGACGAAGGTATCCAG
GGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTGTACAACGCGTCCCCACTAACTGCG
AATTCCATGAAGGCTCGAAGAAGAAGAGTAAGTTTAAACATTTTCGATTTTTTCATAAAT
TTTTTCATCGAGTACCCCGAAGGCCTTGAGGAAATCTACGCGGCGATGGAAACGCTCAAA
CAGGAACTTGAAATGATGAAGGAACCCATGGGGAGGACCCAGGATAACCCTGGGAGGAGC
TGCAAGGATATCTGGCTCTGTCACCCCGATTTCCCGTCAGGCAACTACTGGATTGATCCG
AACGGAGGGTGTTCTGCGGATGCCATCGAAGTTTTCTGCGATTTCGAGGCGGAAGGCGAC
ACTTGCATCTCACCAGTTGAGCGAACCGCAAGTGTAAGTTGGTTGACCTCACAACCTGGT
GATTGGTTTAGCTCCTACAGGATGGGCGACAGGTTTGAATACAACACTAGCATCCCGCAA
TTCAACTTCCTGCGGTTGCTATCGTCGCAAGCGAAGCAAAGATTCACCTACAAGTGCGTC
AACTCTATCGGCTGGGAGAACCAACAAACCGGTAGCTTCGACCAAGCCATCCACTTGCTT
GCTGCTAACGATGAGGTTCTGACTTACGGTAGCGAACATCTTACGGTGATTGAGGATAAC
TGCAAGACCGGCCACGGAAATGGACAGGTGGTTCTAGAACTCCGTACGCGTGAGGTCGAC
CTCCTACCATTGTTCGATTACAAAGCTTTCGACTTTGGTACCCGCTCCCAACGACACGGA
TACCAACTCGATCGCGTTTGTTTTAGCGGATGAATATAATCATGTCTTCACGAGCCACGT
TTTGACGGGTGGCGCGCGCCGC

InterProScan

Pfam
Collagen (IPR008160) - T[35-90] 2.4E-8 - T[114-171] 1.3E-7 - T[187-243] 4.8E-9 - T[236-285] 4.0E-7 - T[278-336] 5.8E-7 - T[337-393] 1.6E-8 - T[403-460] 2.7E-7 - T[752-809] 5.9E-9 - T[953-1011] 1.8E-8
SMART
Fib_collagen_C (IPR000885) - T[1049-1269] 3.3E-75
ProSiteProfiles
Fib_collagen_C (IPR000885) - T[1050-1269] 73.315
Pfam
Fib_collagen_C (IPR000885) - T[1050-1268] 1.4E-68
ProDom
Fib_collagen_C (IPR000885) - T[1163-1268] 1.0E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COBA2_HUMAN 54.259 % 451 1.81E-134
COBA1_HUMAN 52.784 % 607 0
CO5A3_HUMAN 47.918 % 604 0