- Transcript 'Cisavi.CG.ENS81.R143...' >
- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04421.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,834 / 1,586,003]
Amino acid sequence
Length: 1,276
>Cisavi.CG.ENS81.R143.1552530-1586469.04421.p
GPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPGEKGLPGPPGRHIMIPLAMQG
PPGPQGLAGMPGTAGDMGPAGIKGESGEPVGEDGLRGEPGAMGSKGDRGYDGLPGLPGPK
GHRVKAGPRGLPGEAGPRGEMGHKGPPGVSGPPGPQGEPGPPGQQGTSGPQGIPGPQGMM
GPPGTKGPHGKAGLPGIPGADGAPGHPGNEGPTGSKGSQGQPGPQGPQGYPGTRGVKGEN
GVRGIKGNKGEKGLDGLPGFKGDMGPKGDTGIAGPTGSRGEDGPEGPKGREGARGELGPV
GLTGEKGKIGVPGLPGYPGRSGIKGSLGKPGKPGQMGLKGDRGSRGLIGRPGLRGLKGKR
GLEGKRGQEGQRGKRGPRGSTGKAGPKGPPGPRGPSGYVGTKGPPGPPGKDGLPGHPGSR
GETGFQGKTGPPGPAGVVGPQGPTGENGPSGNRGHPGPPVISPQGPAGEPGLSGSAGKEG
SKGDRGPRGPIGKMGATGSQGFPGSRGPQGPVVIKLIILNIIQGAPGLKGSEGPPGPPGP
LGAVGQRGPQGPAGQIGPAGSANGPPGPQGENGSPGGPGGPGPAGRDGLQGPVGLPGAPG
SIGPRGEDGDKGEAGPPGATGLKGGKGEHGPPGPPGVQGNSGDPGPPGNDGEPGQRGQQG
LYGEKGDEGPRGFPGPPGPRGLQGIPGPSGSKGDTGDAGPLGPPGPAGQRGPPGGPEGPP
GTYGQPGNVGDKGEPGGPGAPGISGEPGPMGPKGENGEKGEAGLTGPQGEAGPRGPRGDD
GPKGNPGPVGFPGDPGVSGIPGTPGDEGVPGDVGDTGAPGEPGPPGPSGEVGPSGGPGRR
GPAGPAGAEGRPGEKGAKGESGGIGPVGEPGPHGLQGKTGKRGTTGLQGLPGPAGAPGLP
GSSGADGPVGPMGPSGLKGIKGEMGVSGEKGHPGLIGLVGPPGEEGEKGERGPQGRDGPH
GAKGDDGRPGPSGPVGPMGAPGLPGSLGSKGNKGSLGPTGPKGDEGIQGPPGPPGPPGQV
YNASPLTANSMKARRRRDESFIEYPEGLEEIYAAMETLKQELEMMKEPMGRTQDNPGRSC
KDIWLCHPDFPSGNYWIDPNGGCSADAIEVFCDFEAEGDTCISPKLAVLTNRLHKPNFYT
LCGKYAQLTLKNQFLNQPFEYNTSIPQFNFLRLLSSQAKQRFTYKCVNSIGWENQQTGSF
DQAIHLLAANDEVLTYGSEHLTVIEDNCKTGHGNGQVVLELRTREVDLLPLFDYKAFDFG
TRSQRHGYQLDRVCFS
Nucleotide sequence
Length: 3,828
>Cisavi.CG.ENS81.R143.1552530-1586469.04421.t
GGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAAGGGCCA
CCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGAGATGGGCTTCCCGGC
GAAAAAGGGCTTCCTGGGCCACCTGGTCGACACATTATGATACCGTTGGCGATGCAAGGG
CCACCCGGGCCGCAGGGTCTTGCTGGAATGCCCGGCACAGCAGGTGATATGGGGCCAGCT
GGGATAAAGGGTGAATCAGGGGAACCAGTGGGGGAAGACGGGTTACGTGGTGAACCAGGT
GCCATGGGGTCAAAGGGTGACAGAGGTTATGATGGGTTGCCAGGGTTACCAGGCCCCAAG
GGTCATCGGGTGAAGGCAGGACCACGTGGTTTACCTGGTGAAGCGGGCCCACGTGGAGAA
ATGGGGCACAAAGGGCCACCCGGCGTATCCGGCCCACCTGGCCCACAAGGCGAACCGGGC
CCCCCAGGCCAACAAGGCACATCCGGGCCACAGGGTATTCCCGGCCCACAAGGTATGATG
GGACCACCTGGCACCAAAGGGCCTCACGGCAAAGCCGGCTTACCTGGCATACCGGGCGCA
GACGGCGCACCCGGGCACCCGGGTAACGAAGGTCCCACTGGCAGCAAAGGTTCCCAGGGT
CAACCTGGGCCACAAGGACCACAAGGCTACCCTGGAACACGAGGTGTTAAAGGAGAAAAT
GGAGTCAGAGGTATCAAGGGAAACAAAGGAGAGAAAGGTCTTGATGGGTTACCAGGATTC
AAAGGGGATATGGGTCCTAAGGGTGACACGGGAATTGCGGGGCCAACAGGCTCAAGAGGA
GAAGACGGCCCAGAAGGACCCAAGGGAAGAGAAGGGGCACGTGGAGAACTGGGTCCAGTC
GGTCTCACTGGCGAAAAGGGTAAAATCGGAGTTCCCGGTCTTCCTGGCTATCCTGGTCGA
TCTGGAATCAAGGGGTCGCTTGGAAAGCCTGGTAAACCGGGGCAGATGGGGCTGAAAGGG
GACCGGGGGTCGAGGGGGCTTATTGGACGGCCCGGACTTAGGGGTCTAAAGGGAAAGAGG
GGTTTAGAAGGCAAACGAGGCCAAGAAGGTCAAAGAGGCAAACGGGGTCCTAGAGGATCA
ACTGGCAAAGCAGGACCCAAGGGGCCGCCTGGACCCAGAGGACCAAGTGGGTACGTTGGC
ACCAAAGGGCCACCGGGTCCACCAGGGAAAGACGGGCTTCCAGGACATCCAGGAAGTCGT
GGAGAAACTGGATTCCAAGGCAAGACGGGGCCACCTGGACCAGCCGGCGTCGTCGGCCCA
CAGGGACCAACCGGCGAAAACGGGCCTTCCGGTAACAGAGGACACCCAGGGCCGCCTGTA
ATTTCACCACAGGGACCAGCTGGCGAACCTGGCCTTTCCGGCTCCGCGGGCAAAGAAGGC
TCCAAGGGTGACAGAGGTCCGAGAGGACCCATAGGAAAAATGGGGGCAACTGGATCGCAG
GGTTTCCCTGGGTCTAGGGGTCCACAGGGACCAGTGGTAATTAAATTAATAATTTTAAAT
ATTATTCAGGGTGCTCCAGGCTTAAAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCA
TTGGGCGCTGTCGGACAACGAGGGCCACAAGGACCCGCCGGGCAGATCGGACCAGCTGGA
AGCGCTAATGGGCCACCGGGGCCGCAGGGTGAGAACGGGAGCCCGGGTGGGCCAGGAGGT
CCGGGCCCAGCAGGCCGAGATGGTCTGCAGGGGCCTGTGGGGCTTCCAGGCGCACCGGGA
TCCATCGGGCCACGCGGCGAAGATGGTGACAAGGGCGAAGCTGGGCCTCCTGGTGCAACC
GGCCTCAAAGGTGGAAAGGGCGAGCACGGGCCACCTGGGCCGCCCGGCGTACAAGGAAAC
AGCGGCGATCCTGGCCCACCGGGTAACGACGGAGAGCCAGGTCAAAGGGGTCAGCAAGGT
TTATACGGCGAAAAGGGTGATGAGGGACCCAGGGGATTTCCCGGTCCACCAGGACCCCGC
GGTTTGCAGGGGATTCCCGGGCCGTCAGGAAGCAAAGGAGATACCGGTGACGCTGGGCCC
TTGGGGCCACCTGGACCGGCTGGACAACGAGGCCCCCCTGGTGGACCTGAGGGGCCACCT
GGTACGTATGGTCAACCCGGCAACGTCGGCGACAAGGGTGAACCTGGCGGACCCGGCGCT
CCTGGAATTTCTGGTGAACCTGGACCCATGGGACCAAAAGGAGAAAACGGCGAAAAGGGT
GAAGCAGGTCTCACGGGGCCACAGGGCGAAGCTGGGCCTCGAGGGCCACGCGGCGACGAC
GGACCCAAAGGAAATCCTGGTCCAGTTGGTTTCCCTGGCGACCCCGGCGTATCTGGTATT
CCTGGAACCCCCGGAGACGAAGGAGTTCCCGGAGATGTTGGAGACACTGGAGCACCTGGC
GAACCTGGGCCACCCGGACCAAGTGGCGAAGTGGGGCCATCCGGCGGACCAGGAAGACGC
GGTCCTGCTGGTCCCGCTGGTGCAGAAGGTCGACCTGGTGAAAAGGGGGCCAAGGGCGAA
AGCGGCGGAATCGGCCCCGTCGGCGAACCCGGGCCTCATGGGCTTCAAGGAAAAACTGGA
AAGAGAGGAACAACTGGACTTCAAGGTCTTCCTGGCCCAGCTGGCGCTCCTGGTCTACCT
GGCAGTTCTGGCGCAGACGGACCGGTTGGCCCCATGGGACCATCTGGTTTGAAAGGAATC
AAGGGAGAAATGGGCGTTTCTGGTGAAAAGGGTCACCCCGGTCTCATCGGGCTGGTCGGC
CCCCCTGGGGAAGAGGGTGAGAAGGGTGAACGCGGTCCACAGGGCCGCGATGGTCCACAT
GGAGCCAAGGGTGACGACGGCAGACCCGGGCCATCCGGACCCGTTGGGCCAATGGGCGCA
CCCGGCTTACCGGGAAGCCTTGGTTCAAAGGGAAACAAAGGAAGTCTGGGACCCACGGGA
CCTAAAGGAGACGAAGGTATCCAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTG
TACAACGCGTCCCCACTAACTGCGAATTCCATGAAGGCTCGAAGAAGAAGAGACGAGAGT
TTCATCGAGTACCCCGAAGGCCTTGAGGAAATCTACGCGGCGATGGAAACGCTCAAACAG
GAACTTGAAATGATGAAGGAACCCATGGGGAGGACCCAGGATAACCCTGGGAGGAGCTGC
AAGGATATCTGGCTCTGTCACCCCGATTTCCCGTCAGGCAACTACTGGATTGATCCGAAC
GGAGGGTGTTCTGCGGATGCCATCGAAGTTTTCTGCGATTTCGAGGCGGAAGGCGACACT
TGCATCTCACCAAAATTGGCTGTGCTAACCAATAGGCTACATAAACCCAATTTTTATACT
TTGTGTGGGAAATACGCACAGTTAACTCTAAAAAACCAGTTCTTAAACCAGCCTTTTGAA
TACAACACTAGCATCCCGCAATTCAACTTCCTGCGGTTGCTATCGTCGCAAGCGAAGCAA
AGATTCACCTACAAGTGCGTCAACTCTATCGGCTGGGAGAACCAACAAACCGGTAGCTTC
GACCAAGCCATCCACTTGCTTGCTGCTAACGATGAGGTTCTGACTTACGGTAGCGAACAT
CTTACGGTGATTGAGGATAACTGCAAGACCGGCCACGGAAATGGACAGGTGGTTCTAGAA
CTCCGTACGCGTGAGGTCGACCTCCTACCATTGTTCGATTACAAAGCTTTCGACTTTGGT
ACCCGCTCCCAACGACACGGATACCAACTCGATCGCGTTTGTTTTAGC
| Pfam |
Collagen (IPR008160) - T[1-49] 9.6E-7 - T[60-119] 7.7E-7 - T[247-305] 2.8E-7 - T[311-364] 4.9E-8 - T[358-416] 4.6E-8 - T[400-458] 5.3E-9 - T[464-510] 3.5E-7 - T[657-715] 2.1E-6 - T[766-824] 1.3E-7 - T[871-926] 3.1E-7 - T[916-971] 1.6E-7 - T[961-1019] 1.8E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1048-1276] 1.3E-63 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1049-1276] 68.448 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1049-1275] 1.4E-64 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1170-1275] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 51.942 % | 656 | 0 |
| COBA1_HUMAN | 54.038 % | 644 | 0 |
| CO5A3_HUMAN | 49.094 % | 595 | 0 |