- Transcript 'Phmamm.CG.MTP2014.S7...' >
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- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Moocci.CG.ELv1_2.S62...' >
- Transcript 'Cisavi.CG.ENS81.R145...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R145.367997-371014.00620.t
Possible name(s)
HMGB1; HMGB2; HMGB3
Gene model
Location
R145 [367,996 / 370,992]
Amino acid sequence
Length: 200
>Cisavi.CG.ENS81.R145.367997-371014.00620.p
MPTKRDPNKPRGRMTGYAYFVQTCREEHKRKHPNEQVVFAEFSRKCAKRWKAKEKQTFID
MAEKDRLRYEKEMKEYAIAGGETKKKKKKKDPNAPKRPQSAFFLFCADRRALLKGENPGW
TVGEIAKALGKKWAVATPETKKKYADQGEIEKSKYVKEMAKYRAQQESSNHGDAKRQKIE
KPAASSSASSSESESEPESD
Nucleotide sequence
Length: 953
>Cisavi.CG.ENS81.R145.367997-371014.00620.t
ATGCCGACAAAACGAGACCCCAATAAGCCCAGGGGCAGAATGACTGGCTACGCTTACTTC
GTTCAAACCTGCCGAGAAGAGCACAAACGTAAACATCCAAATGAACAAGTTGTTTTTGCT
GAATTTTCAAGGAAATGTGCAAAACGCTGGAAGGCCAAGGAGAAGCAGACATTCATTGAC
ATGGCTGAGAAGGACAGGCTGCGATACGAGAAAGAAATGAAGGAATACGCGATCGCAGGA
GGAGAGACCAAGAAGAAGAAGAAAAAGAAGGATCCTAATGCACCAAAACGACCCCAATCT
GCCTTTTTCCTTTTTTGTGCTGATAGGAGAGCTCTCCTCAAAGGAGAGAACCCAGGTTGG
ACTGTAGGCGAAATCGCAAAGGCGCTGGGCAAGAAGTGGGCGGTTGCCACCCCTGAGACC
AAAAAGAAGTACGCAGATCAAGGCGAAATAGAAAAGAGCAAATATGTCAAGGAAATGGCA
AAATACCGTGCGCAACAGGAGTCCTCGAACCACGGCGACGCGAAACGCCAAAAAATCGAG
AAACCGGCTGCGTCGTCGTCCGCTAGCTCGAGCGAGAGCGAAAGCGAACCGGAAAGTGAT
TGAGAATCACCCCGTGCTCGCTGTCAAGCTACAACGATGCTCCCTGTGGTGTATATACAT
TTTACAATCTAATTGCCATGGCATAAAAAAAACAACCTAATAACTGTTTTATCAGCAAGA
AATTTAAGGAAAACACACTTTTATACGCTGTTGCCAAACTTTTATTTTGATTTTTCACGT
TTTATCTTGAAAAAGAGAAATAATTTCAACATGTTTTTCCCCGCTAATTTTCAGTCCAAT
TTCGCTGTTGTTTTTTCTGTTCCCGTTTATTTTTTTTCTGTTGTACATAGTGATAACGTT
GCACATGTTACAGCAGTTTTGTTACTTTCATTAACTCTACAACATGGGCCCAA
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[1-77] 5.9E-26 - T[79-179] 4.2E-29 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[4-77] 2.75E-20 - T[82-165] 3.8E-26 |
| Pfam |
HMG_box_dom (IPR009071) - T[7-76] 2.1E-16 - T[95-163] 2.3E-20 |
| SMART |
HMG_box_dom (IPR009071) - T[9-78] 8.4E-14 - T[94-164] 7.0E-17 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[10-77] 13.141 - T[95-163] 18.28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMGB1_HUMAN | 56.364 % | 179 | 2.06E-57 |
| HMGB2_HUMAN | 53.571 % | 169 | 3.39E-53 |
| HGB1A_HUMAN | 52.727 % | 166 | 4.16E-52 |