- Transcript 'Cisavi.CG.ENS81.R48....' >
- Transcript 'KH2012:KH.L137.2.v2....' >
- Transcript 'Cisavi.CG.ENS81.R145...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R145.536176-587366.00641.t
Possible name(s)
ATRX; RAD54L; RAD54L2
Gene model
Location
R145 [541,967 / 587,366]
Amino acid sequence
Length: 1,095
>Cisavi.CG.ENS81.R145.536176-587366.00641.p
DAKSEKKEKSDAKSESKKADNKKSDDEKTAKSSGNTGSKKSNVECITIDSDSDVGNPQNG
SSSDSEGVSFKVKKRGKGQTWLDDFFKSEPVSDDSEEEKEEKVKSRPHNKKKRRRIRDLG
SDNSKEDSTDAFHDDPDSAKKSRRRNIRKIVDLSKSTQDAERMEKARRKRLEQDENAPKE
EVIIIPDDQSPQKKKKVITHLILSKKPLIEVDRSIVGALKPHQVEGIKFLWRNVVENVNR
ANRGKGDGCILAHCMGLGKTLQVIAFLHTVLHSPHLPKLRTALVVCPLGTVLNWCKEIDM
WTRKSDQPIAIYNLSETKSFHERATMLKKWHKKGGVMMTGYKMFLLMSSSKKGKYKRYNH
LFAEHMLQPGPDIVVCDEGHIIKNEATSLCTVMSSIKTRRRVVLTGTPLQNNLMEYYCMV
NFIKPRLLGSAKEFNNRFTHPISNGQHVDSTEKDVKLMKKRSHVLHELLAGCVQRKDIDC
LREQLMPKYEYVLRVRLTPLQIALYERYLSTFKCSDISNRKGCLFQDFKNLLLVVCHPKV
LVLDKLRREQQRLAETAREDIRSFLNDEDEDDESSEIGSEEEIDPPSPDELLRLPTMSVQ
ELKKLIISKGGSVQHIREKEDLVSCAKLLLTKSADTGPDELWYEKVMPSDSNLIDSVEMS
GKVTLLLRILKHSAQVGDKVVVFSQSLLTLDLIEDVLRNVTMKENDTSRADSGIRINKWY
KDIDYCRIDGSVKQNSRKNCIDQFNTHVDVRCRLMLVSTRAGGIGINLIGANRAIVFDAS
WNPTHDVQSIFRIYRFGQSKPCFVYRFIAQGTMEEKIYDRQVVKQSLAFRVVDEQQIERH
YTANDIAELYTFKPERLTDDVLKTRPTPVLPKDTLLADILKARSTRDLIVSYHEHDSLLG
HQAGEELSEADRRSAWDEYDRERFPPVPVDSPLLKLSVSVLDQLITLADAELVKNTKQMD
NCKSESLDETMLRVKYLNQSMSIHDVEKTAVEIQTRRMVFLPQLERTRSFILQKKEQLVH
CKTRLATKPVYTPRIPMPHILYNVKFYQPNPRPAGPTFQPNPRPAGPSYRGGSFGPRHQP
FRPNGRPQAFFHRPH
Nucleotide sequence
Length: 3,285
>Cisavi.CG.ENS81.R145.536176-587366.00641.t
GATGCCAAATCGGAAAAGAAAGAAAAGAGTGATGCCAAATCAGAAAGTAAAAAAGCGGAT
AACAAAAAATCCGATGATGAAAAAACTGCAAAATCTAGCGGCAACACTGGTTCGAAGAAA
TCCAACGTCGAATGCATCACGATTGACAGCGATTCGGATGTGGGGAATCCCCAGAATGGG
TCCAGCAGTGACAGCGAAGGGGTGTCGTTCAAAGTGAAGAAAAGGGGGAAGGGTCAAACG
TGGTTGGACGACTTTTTTAAATCGGAACCGGTTTCAGATGACAGTGAGGAAGAAAAAGAA
GAAAAAGTTAAGTCCCGTCCACACAACAAAAAGAAACGCAGAAGAATCAGGGATTTGGGG
AGCGATAACTCAAAAGAAGATAGTACGGATGCCTTCCATGACGATCCAGACTCCGCAAAG
AAGAGCAGGAGACGTAACATCCGGAAGATCGTGGACCTCAGCAAGAGCACTCAGGATGCG
GAGCGGATGGAGAAAGCGAGGAGGAAGAGGTTGGAGCAGGATGAGAACGCTCCTAAGGAG
GAGGTTATCATTATACCTGACGACCAATCCCCACAGAAAAAGAAGAAAGTTATAACTCAC
CTTATTCTATCCAAGAAACCACTCATAGAGGTTGATCGGAGCATTGTAGGTGCTCTGAAG
CCCCATCAAGTGGAGGGTATAAAATTTCTATGGCGCAACGTGGTCGAGAACGTGAATCGA
GCGAACCGAGGAAAGGGTGATGGGTGTATTTTGGCTCATTGCATGGGGCTGGGGAAAACC
CTACAGGTGATAGCATTCCTGCACACAGTGCTCCACTCACCCCATCTGCCCAAGCTGCGC
ACGGCGCTCGTAGTGTGTCCACTCGGCACCGTACTCAACTGGTGCAAGGAGATCGACATG
TGGACGAGGAAATCTGATCAACCGATCGCGATTTATAACTTGTCGGAGACAAAGTCGTTT
CATGAACGAGCTACTATGCTAAAGAAATGGCATAAAAAAGGTGGCGTAATGATGACAGGT
TACAAAATGTTTCTGCTCATGTCCAGTAGCAAGAAGGGAAAGTACAAACGATATAACCAT
CTTTTCGCCGAACATATGCTTCAACCTGGCCCTGATATTGTTGTTTGTGACGAAGGGCAT
ATAATCAAGAATGAAGCCACGAGTCTATGCACTGTGATGTCATCAATCAAAACCCGCCGA
AGAGTAGTGCTTACGGGGACTCCCCTTCAGAACAACTTAATGGAGTATTACTGCATGGTC
AACTTTATCAAGCCAAGGTTACTTGGAAGTGCAAAGGAATTCAACAACCGATTCACGCAC
CCGATAAGCAACGGACAACACGTTGATTCTACCGAGAAAGACGTCAAACTGATGAAGAAG
CGCTCGCACGTGCTGCATGAGCTTCTGGCCGGTTGCGTCCAGCGTAAAGACATCGATTGT
CTGCGTGAACAGCTGATGCCGAAATATGAATACGTTTTGCGTGTCCGCCTCACACCACTT
CAGATCGCGTTATACGAGCGTTACCTCAGCACTTTCAAATGCAGTGACATCAGCAATAGG
AAGGGATGTCTCTTTCAAGACTTCAAGAATCTTCTGCTCGTGGTTTGTCATCCTAAGGTC
CTTGTGCTCGACAAGCTACGAAGGGAACAGCAACGGCTAGCGGAGACGGCACGCGAGGAC
ATCCGATCCTTCCTCAATGACGAAGATGAAGATGATGAATCCTCCGAGATCGGATCGGAG
GAGGAGATCGATCCTCCGTCTCCCGACGAGCTCCTTCGCCTCCCGACCATGTCCGTGCAA
GAGTTAAAGAAACTGATCATTAGTAAAGGCGGAAGCGTCCAACACATCCGTGAGAAAGAG
GATCTGGTATCGTGTGCCAAGCTATTGCTGACCAAATCTGCAGATACCGGACCAGACGAA
CTGTGGTATGAAAAAGTGATGCCAAGTGACAGTAATTTGATTGATTCTGTGGAAATGAGT
GGGAAGGTGACTTTATTACTGAGGATCCTGAAGCACTCGGCGCAAGTGGGTGACAAGGTG
GTCGTCTTCTCCCAGTCCTTGTTGACCCTTGACCTCATTGAGGACGTTTTGCGCAACGTC
ACAATGAAGGAAAACGACACGAGTCGTGCTGATTCGGGAATTCGGATAAATAAGTGGTAC
AAGGACATCGACTATTGCCGTATCGACGGCTCTGTCAAGCAAAACTCGAGAAAGAACTGC
ATCGACCAGTTCAACACGCATGTTGACGTGCGATGCAGACTCATGCTGGTATCCACAAGA
GCTGGGGGAATTGGAATCAACCTTATTGGAGCAAATAGAGCGATTGTGTTCGACGCTTCC
TGGAACCCGACCCATGATGTGCAGTCCATATTCCGGATCTACCGCTTCGGCCAATCAAAA
CCCTGCTTTGTGTACCGGTTCATCGCACAAGGGACAATGGAGGAAAAGATCTACGATCGG
CAGGTGGTGAAGCAGTCGCTTGCGTTTCGCGTCGTCGACGAACAGCAAATCGAACGTCAT
TACACAGCGAACGATATCGCAGAGCTGTATACGTTCAAACCGGAACGCTTGACGGATGAC
GTACTGAAAACGCGTCCGACACCCGTCCTGCCGAAGGATACCTTGCTTGCCGATATCTTA
AAGGCTCGCTCGACACGTGACCTAATCGTCTCCTACCACGAGCACGATTCACTCCTCGGC
CACCAAGCGGGAGAAGAGTTGAGCGAGGCTGACCGACGAAGCGCATGGGATGAATACGAC
AGGGAACGTTTTCCTCCGGTTCCCGTTGATAGCCCTTTGCTCAAACTCAGTGTCTCGGTA
CTGGACCAACTTATCACGTTAGCCGACGCGGAGTTGGTGAAAAATACGAAGCAGATGGAC
AACTGCAAGTCTGAATCACTGGACGAAACGATGCTAAGAGTCAAGTATTTAAACCAGTCC
ATGTCCATCCACGACGTTGAAAAAACAGCCGTCGAAATCCAGACCCGAAGAATGGTGTTT
CTGCCGCAATTGGAACGAACCAGAAGTTTCATACTACAGAAGAAAGAACAGCTGGTGCAC
TGCAAAACAAGATTGGCCACGAAACCCGTGTACACGCCAAGGATCCCAATGCCACACATA
CTTTACAATGTAAAATTCTACCAACCAAACCCGAGACCCGCAGGTCCGACGTTTCAACCG
AACCCGAGGCCCGCAGGACCATCGTACCGTGGGGGGTCATTCGGCCCGCGCCACCAGCCT
TTCAGACCGAACGGACGTCCACAGGCATTCTTTCATCGGCCACAC
| Gene3D |
SNF2-like_sf (IPR038718) - T[186-475] 3.7E-80 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[190-475] 3.67E-49 - T[372-424] 1.05E-50 - T[652-841] 1.05E-50 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[215-441] 5.3E-19 |
| Pfam |
SNF2_N (IPR000330) - T[240-511] 1.4E-53 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[240-426] 15.47 |
| CDD |
Helicase_C (IPR001650) - T[660-805] 1.83511E-17 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[662-845] 13.656 |
| Pfam |
Helicase_C (IPR001650) - T[662-797] 1.5E-14 |
| SMART |
Helicase_C (IPR001650) - T[691-797] 1.1E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ATRX_HUMAN | 42.444 % | 684 | 0 |
| ARIP4_HUMAN | 38.032 % | 434 | 2.36E-131 |
| RAD54_HUMAN | 33.811 % | 173 | 1.18E-44 |