- Transcript 'Cisavi.CG.ENS81.R148...' >
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- Transcript 'Cisavi.CG.ENS81.R148...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R148.436988-458312.10141.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
R148 [436,987 / 458,312]
Amino acid sequence
Length: 1,425
>Cisavi.CG.ENS81.R148.436988-458312.10141.p
QLDLNLITCIQDQTFRPLRRLEVLTLNNNNLTHVSPLVLRGKMPHLRTLRLHSNPIRCNC
HMAWLADWLSDRPTMAVFTQCAEPISLRGLNLASADRSEFLCNGYKRFHLHIRAPTCEIT
SCPAACICINGIVDCRDRGLTVLPATFPLDTTELRLEQNRIQIIPSFSFSSYPQLRRIDL
SNNEIKEIERDAFDGLSQLSSLVMYGNKITSLPAGIFTHMHNLQMLLMNANKIKCLRQDV
FSGLRSLTLLSLYDNKLQSISRGTFANLRSIETMHLAQNPFICDCHMRWLVNYVKKYKVE
TSGAKCAGPRRLAGKKISSAKTRKMRCNGKNIIFSASGIAAECIPEAECPNQCRCDGSIV
DCSRQALTAIPDNIPPYASELFLNHNRIQMITSVGLFQKLRNLKKIDLSNNQLTAIEDGA
FSGAGSVLELWLNHNVLTDIRGSMFSGLNNLRTLMVRNNHLMCIGNHTFAGLSTVRHLDL
YSNQIATILSGAFATMSSLSTLNLLSNPLDCNCHLSWLSTWLRRSPVSSGNPRCAEPRFL
REFPVADINPRDFRCSTEQEARAAPTCLPVQKCPEQCTCEGTIVRCANTGLTSVPVDDIP
HDVTELYLEMNDIREIPASIKKFIYLTTLDLSNNDISSINDWMFSNLTRLSTLLLAYNRL
RCIPPKAFTGLRSLRILSLHSNELSSLPEGAFDDLTSLSHVGFGANPWYCDCNLRWFSQW
VKSDFFEAGIARCSGPPRMAGRLLLSSSLETFVCQGPLDIAIAVKCNPCLSSPCQHNSTC
GVHPTDYYQCTCQPGFKGRHCEMPIDPCILEPCHNGARCIARDEAVYNCECVVGFSGDRC
ENNINDCTATSCPVSNATCIDGVNTFTCRCPVGWTGTNCNEQIPDPCTLEQPCQHGGSCV
LLQEIDAISYRCDCSSGYRGVNCSERFDPCLSHKCENNGLCEINQQSPIGYQCNCVGEYR
GQYCTFPMDIVDVLQDDPCSDNDCQHGSECYIEDGRDYKCRCLPGYAGNKCQQLVSLSFQ
RNGSFIETQQQGLVDTNFTFIISTTQLNGVLMYDGDSTGSSREHLAIEFFTGHVRVSYDL
GISPGSTIYSQIPINDGTPHKVELIIRDRLVSLKIDNGKTIKETMTSSMTSSSEVIGSEA
LSPLFIGGIRADLLRSARRFWHIRNTTSFKGCIHGLYINQSQLEFNDLMPVDDLISDIRP
GCQGDGGSCSAARCTHGQCVFVAGRGITCRCDAGYTGESCNTRATPCATNACQHGTCRPN
GASYTCECEKGMLHGRHCETLDYCAGVDCRRGHCVSTDIGYQCKCKKHFTGRHCQIRIRS
CPGTRIKQYYQVSRVSKSRTRSVNGMTRCRSRRRFTNMVCSGACPARRRSRTSRASVFGQ
SDAASTSCCKPLRVQSKRIRMKCSDGSLIHQVLQKVRKCGCQSCS
Nucleotide sequence
Length: 4,278
>Cisavi.CG.ENS81.R148.436988-458312.10141.t
CAACTTGACCTGAACTTGATTACTTGCATACAAGACCAAACCTTCCGGCCCCTTCGAAGA
TTGGAGGTTCTCACTTTAAATAACAACAACCTAACACACGTGTCACCATTGGTACTTCGG
GGGAAAATGCCACATCTTAGAACTCTACGTCTTCACTCCAATCCGATCAGATGTAACTGT
CACATGGCCTGGCTTGCTGATTGGTTATCAGACCGACCGACCATGGCTGTATTTACCCAA
TGTGCCGAACCGATTAGTTTGCGAGGATTGAACCTGGCGTCAGCTGACCGGAGCGAATTT
CTTTGCAACGGTTATAAACGATTTCACCTGCATATCCGTGCACCCACATGTGAAATAACA
TCATGTCCAGCAGCATGTATTTGTATCAATGGCATTGTGGATTGCAGAGACCGTGGCCTC
ACAGTATTGCCCGCCACCTTTCCCCTTGATACAACTGAACTGCGCCTTGAGCAAAATCGA
ATTCAGATAATTCCAAGTTTTTCCTTTTCATCGTACCCACAACTTCGCAGAATCGATTTG
AGCAACAACGAAATTAAAGAAATCGAGCGAGATGCTTTTGATGGACTTTCACAACTATCT
TCATTAGTTATGTACGGAAACAAGATTACATCACTGCCAGCTGGTATTTTTACTCACATG
CACAACCTGCAGATGCTATTAATGAATGCAAATAAGATCAAATGTTTGCGGCAAGATGTG
TTCAGTGGATTGCGTTCTCTCACATTACTATCATTATATGACAACAAACTGCAGTCCATA
TCCAGGGGAACCTTTGCTAACCTACGATCCATAGAAACAATGCACTTGGCTCAAAATCCG
TTTATCTGTGACTGCCATATGAGGTGGTTGGTGAATTATGTAAAAAAGTACAAAGTTGAA
ACATCAGGTGCAAAATGTGCTGGTCCACGACGATTAGCTGGCAAAAAAATATCTTCTGCC
AAAACAAGAAAAATGAGATGCAATGGTAAAAATATCATTTTTTCTGCATCGGGTATAGCA
GCAGAATGTATACCAGAAGCTGAATGCCCCAACCAATGTCGATGTGATGGATCTATTGTG
GATTGCTCAAGACAAGCGCTCACTGCTATTCCTGATAACATTCCACCTTATGCTTCTGAA
TTATTTTTGAACCACAATCGGATACAGATGATAACAAGTGTCGGTTTGTTTCAAAAATTA
AGAAATTTGAAGAAAATTGACCTTTCTAACAACCAGCTTACTGCAATCGAGGATGGAGCT
TTTTCTGGGGCTGGGAGTGTTCTAGAACTTTGGTTGAACCACAATGTGCTCACTGATATT
CGGGGATCAATGTTCAGTGGACTTAACAATCTACGTACTTTAATGGTTCGAAACAACCAT
CTCATGTGCATTGGGAACCATACATTTGCTGGGCTATCCACTGTACGACATCTTGACCTG
TACTCCAACCAGATAGCCACCATTCTTAGTGGGGCATTCGCCACTATGTCATCACTAAGC
ACACTAAATCTTTTATCGAATCCACTCGACTGTAACTGCCACTTATCTTGGTTGTCAACA
TGGTTACGACGAAGTCCCGTCTCATCAGGCAACCCACGATGTGCTGAACCCCGATTTCTA
AGGGAATTCCCCGTAGCTGATATTAACCCCAGGGATTTCCGATGCAGCACAGAACAAGAG
GCACGGGCGGCACCAACGTGTCTGCCTGTCCAAAAGTGCCCAGAACAATGTACATGTGAA
GGAACTATTGTTCGATGCGCCAACACAGGGTTAACATCGGTCCCTGTAGACGACATACCC
CATGATGTCACTGAACTATACTTGGAGATGAATGATATTAGGGAAATCCCCGCATCAATA
AAGAAATTTATCTATCTCACTACTTTGGATCTGAGCAACAATGACATATCCAGCATAAAT
GATTGGATGTTTTCCAACTTAACACGATTATCTACTTTGCTATTGGCATACAACCGATTG
CGGTGTATTCCACCCAAAGCATTCACCGGTCTCCGATCACTCAGGATACTTTCCCTTCAC
AGTAATGAACTTTCAAGTTTACCGGAAGGTGCATTTGATGACCTGACTTCCCTGTCCCAT
GTGGGATTTGGGGCCAATCCTTGGTACTGTGATTGCAATCTACGTTGGTTCAGCCAGTGG
GTGAAATCAGATTTCTTCGAAGCAGGAATCGCACGATGCTCTGGTCCCCCTCGGATGGCT
GGCCGCCTTCTTCTCTCATCGTCACTTGAAACTTTTGTGTGTCAAGGACCACTGGACATC
GCCATAGCTGTGAAATGTAACCCGTGTCTGTCCTCTCCATGCCAGCACAACTCAACTTGT
GGTGTGCACCCCACTGATTACTACCAATGCACATGCCAACCAGGTTTCAAAGGGAGGCAT
TGTGAGATGCCGATAGACCCTTGCATATTGGAGCCATGTCACAACGGTGCTAGATGTATA
GCACGAGATGAGGCTGTATATAATTGTGAGTGTGTGGTTGGATTCAGTGGCGATAGATGT
GAGAACAATATCAATGACTGCACAGCTACCTCATGCCCAGTGTCGAATGCAACATGTATT
GATGGGGTCAACACCTTTACGTGCCGCTGCCCAGTGGGCTGGACTGGGACCAATTGTAAT
GAACAGATACCAGACCCATGCACATTAGAACAACCATGCCAACATGGTGGATCTTGTGTC
TTGTTACAAGAAATCGATGCTATATCTTACAGATGTGACTGTAGCAGTGGGTACCGTGGG
GTGAACTGTAGTGAACGTTTTGATCCCTGTCTCAGCCACAAGTGCGAGAACAATGGCCTC
TGTGAGATTAACCAACAATCGCCCATCGGATACCAGTGCAATTGTGTAGGGGAATATCGA
GGCCAATACTGCACATTTCCTATGGATATAGTCGATGTGTTGCAAGATGACCCGTGTTCG
GACAATGATTGTCAGCATGGATCTGAATGTTATATCGAGGACGGGAGAGATTATAAATGT
CGCTGTTTGCCGGGCTATGCTGGGAATAAGTGTCAGCAGCTTGTAAGCCTCAGTTTCCAA
CGAAACGGGAGTTTCATAGAGACCCAGCAGCAAGGACTCGTCGACACCAACTTCACATTC
ATCATCTCAACCACACAGCTAAACGGAGTTCTAATGTACGATGGGGACAGCACTGGGTCA
TCTAGGGAACATCTTGCCATTGAGTTTTTCACCGGTCATGTCCGTGTCAGCTACGATTTA
GGGATTTCCCCAGGATCCACCATCTACAGTCAGATTCCGATCAATGATGGAACTCCACAT
AAGGTTGAGCTGATCATTCGTGACCGCCTGGTGTCACTAAAGATTGACAACGGAAAAACG
ATCAAGGAAACCATGACATCATCAATGACATCATCAAGCGAGGTCATAGGGTCGGAAGCT
TTATCCCCACTCTTCATCGGAGGAATCAGAGCTGACCTACTCAGGTCAGCAAGAAGGTTC
TGGCACATCAGGAACACAACCAGTTTTAAAGGTTGTATCCATGGTCTCTACATCAACCAA
TCCCAGCTGGAGTTCAATGATCTCATGCCTGTTGATGATCTCATCAGTGACATCAGGCCT
GGTTGCCAAGGAGATGGAGGGTCATGCTCGGCTGCACGTTGTACCCATGGACAATGTGTC
TTTGTAGCAGGAAGAGGAATAACCTGTAGATGCGATGCAGGGTATACAGGTGAGAGTTGC
AACACTAGGGCGACACCATGTGCAACGAATGCATGCCAACACGGAACATGTAGACCGAAC
GGGGCATCGTATACCTGCGAGTGCGAGAAAGGTATGTTGCACGGCAGACATTGCGAAACA
CTTGATTATTGTGCTGGTGTAGATTGTAGAAGAGGGCACTGTGTGTCAACTGACATTGGA
TACCAGTGCAAATGTAAGAAGCACTTTACTGGGAGGCATTGCCAAATTAGAATACGATCT
TGTCCTGGTACGAGGATCAAGCAATACTACCAAGTGAGTCGTGTCAGCAAGAGCCGTACA
CGATCTGTCAATGGAATGACCAGATGTCGGAGCAGAAGACGTTTCACAAACATGGTTTGT
TCTGGGGCCTGTCCGGCGCGTCGACGCTCCCGCACAAGTCGTGCATCTGTGTTTGGTCAA
TCGGACGCTGCTTCTACATCGTGTTGCAAACCACTACGTGTACAAAGCAAACGTATTCGC
ATGAAATGCAGCGATGGATCTCTGATACACCAAGTTCTGCAAAAAGTACGAAAATGCGGA
TGTCAGTCTTGCTCTTGA
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-106] 1.1E-22 - T[119-334] 1.3E-65 - T[346-564] 4.3E-62 - T[570-757] 1.2E-57 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[2-56] 2.8E-8 - T[152-209] 1.1E-12 - T[222-280] 5.6E-12 - T[401-461] 9.1E-14 - T[649-700] 2.9E-12 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[18-41] 0.022 - T[43-66] 110.0 - T[152-171] 210.0 - T[172-195] 0.98 - T[196-219] 0.0057 - T[220-243] 2.2 - T[244-267] 0.0035 - T[400-423] 2.4E-5 - T[425-447] 140.0 - T[448-471] 0.43 - T[472-495] 3.3 - T[623-646] 14.0 - T[647-670] 0.0023 - T[671-694] 1.2E-5 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[20-41] 7.288 - T[45-66] 5.671 - T[150-171] 5.656 - T[174-195] 7.319 - T[198-219] 5.918 - T[222-243] 5.202 - T[246-267] 6.48 - T[377-398] 4.832 - T[402-423] 7.897 - T[426-447] 5.833 - T[450-471] 6.01 - T[474-495] 5.871 - T[498-519] 5.895 - T[602-623] 5.332 - T[625-646] 8.259 - T[649-670] 6.472 - T[673-694] 7.204 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[54-103] 1.8E-5 - T[279-328] 1.9E-6 - T[507-556] 3.1E-8 - T[706-755] 1.0E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[78-102] 2.3 - T[304-317] 21.0 - T[531-556] 8.5E-4 - T[731-754] 0.028 |
| SMART |
LRRNT (IPR000372) - T[121-153] 7.6E-7 - T[348-380] 1.2E-5 - T[572-605] 1.9E-4 |
| Pfam |
LRRNT (IPR000372) - T[122-148] 4.4E-6 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[765-802] 0.18 - T[804-841] 0.016 - T[843-880] 5.9E-7 - T[885-924] 0.75 - T[975-1012] 0.92 - T[1247-1279] 0.03 - T[1280-1315] 0.022 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[767-802] 16.582 - T[804-841] 19.917 - T[843-880] 17.39 - T[883-924] 18.554 - T[926-965] 15.145 - T[975-1012] 18.317 - T[1205-1241] 12.265 - T[1243-1279] 10.092 - T[1280-1315] 12.561 |
| SMART |
EGF-like_dom (IPR000742) - T[768-802] 0.0031 - T[807-841] 9.7E-6 - T[846-880] 0.001 - T[886-924] 1.9E-6 - T[929-965] 0.1 - T[978-1012] 6.0E-5 - T[1208-1241] 0.005 - T[1246-1279] 9.6E-4 - T[1283-1315] 0.0023 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[790-801] . - T[790-801] . - T[829-840] . - T[829-840] . - T[868-879] . - T[868-879] . - T[912-923] . - T[912-923] . - T[953-964] . - T[1000-1011] . - T[1000-1011] . - T[1229-1240] . - T[1229-1240] . - T[1303-1314] . |
| Pfam |
EGF-like_dom (IPR000742) - T[811-839] 1.6E-5 - T[856-877] 1.2E-5 - T[887-921] 8.3E-7 - T[979-1009] 3.1E-5 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[843-868] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[859-870] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[1000-1202] 4.75E-30 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[1015-1202] 31.754 |
| SMART |
Laminin_G (IPR001791) - T[1034-1181] 3.4E-26 |
| Pfam |
Laminin_G (IPR001791) - T[1042-1180] 4.6E-21 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[1321-1425] 11.249 |
| SMART |
Cys_knot_C (IPR006207) - T[1337-1425] 3.7E-4 |
| ProSitePatterns |
Cys_knot_C (IPR006207) - T[1388-1424] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 45.461 % | 1213 | 0 |
| SLIT3_HUMAN | 43.394 % | 1173 | 0 |
| SLIT2_HUMAN | 44.931 % | 1236 | 0 |