- Clone 'cima856472' >
- Transcript 'Cisavi.CG.ENS81.R148...' >
- Transcript 'Cisavi.CG.ENS81.R148...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R148.436988-458312.10142.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
R148 [436,987 / 458,312]
Amino acid sequence
Length: 1,424
>Cisavi.CG.ENS81.R148.436988-458312.10142.p
QLDLNLITCIQDQTFRPLRRLEVLTLNNNNLTHVSPLVLRGKMPHLRTLRLHSNPIRCNC
HMAWLADWLSDRPTMAVFTQCAEPISLRGLNLASADRSEFLCNEITAQRAPTCEITSCPA
ACICINGIVDCRDRGLTVLPATFPLDTTELRLEQNRIQIIPSFSFSSYPQLRRIDLSNNE
IKEIERDAFDGLSQLSSLVMYGNKITSLPAGIFTHMHNLQMLLMNANKIKCLRQDVFSGL
RSLTLLSLYDNKLQSISRGTFANLRSIETMHLAQNPFICDCHMRWLVNYVKKYKVETSGA
KCAGPRRLAGKKISSAKTRKMRCNGKNIIFSYIYASGIAAECIPEAECPNQCRCDGSIVD
CSRQALTAIPDNIPPYASELFLNHNRIQMITSVGLFQKLRNLKKIDLSNNQLTAIEDGAF
SGAGSVLELWLNHNVLTDIRGSMFSGLNNLRTLMVRNNHLMCIGNHTFAGLSTVRHLDLY
SNQIATILSGAFATMSSLSTLNLLSNPLDCNCHLSWLSTWLRRSPVSSGNPRCAEPRFLR
EFPVADINPRDFRCSTEQEARAAPTCLPVQKCPEQCTCEGTIVRCANTGLTSVPVDDIPH
DVTELYLEMNDIREIPASIKKFIYLTTLDLSNNDISSINDWMFSNLTRLSTLLLAYNRLR
CIPPKAFTGLRSLRILSLHSNELSSLPEGAFDDLTSLSHVGFGANPWYCDCNLRWFSQWV
KSDFFEAGIARCSGPPRMAGRLLLSSSLETFVCQGPLDIAIAVKCNPCLSSPCQHNSTCG
VHPTDYYQCTCQPGFKGRHCEMPIDPCILEPCHNGARCIARDEAVYNCECVVGFSGDRCE
NNINDCTATSCPVSNATCIDGVNTFTCRCPVGWTGTNCNEQIPDPCTLEQPCQHGGSCVL
LQEIDAISYRCDCSSGYRGVNCSERFDPCLSHKCENNGLCEINQQSPIGYQCNCVGEYRG
QYCTFPMDIVDVLQDDPCSDNDCQHGSECYIEDGRDYKCRCLPGYAGNKCQQLVSLSFQR
NGSFIETQQQGLVDTNFTFIISTTQLNGVLMYDGDSTGSSREHLAIEFFTGHVRVSYDLG
ISPGSTIYSQIPINDGTPHKVELIIRDRLVSLKIDNGKTIKETMTSSMTSSSEVIGSEAL
SPLFIGGIRADLLRSARRFWHIRNTTSFKGCIHGLYINQSQLEFNDLMPVDDLISDIRPG
CQGDGGSCSAARCTHGQCVFVAGRGITCRCDAGYTGESCNTRATPCATNACQHGTCRPNG
ASYTCECEKGMLHGRHCETLDYCAGVDCRRGHCVSTDIGYQCKCKKHFTGRHCQIRIRSC
PGTRIKQYYQVSRVSKSRTRSVNGMTRCRSRRRFTNMVCSGACPARRRSRTSRASVFGQS
DAASTSCCKPLRVQSKRIRMKCSDGSLIHQVLQKVRKCGCQSCS
Nucleotide sequence
Length: 4,275
>Cisavi.CG.ENS81.R148.436988-458312.10142.t
CAACTTGACCTGAACTTGATTACTTGCATACAAGACCAAACCTTCCGGCCCCTTCGAAGA
TTGGAGGTTCTCACTTTAAATAACAACAACCTAACACACGTGTCACCATTGGTACTTCGG
GGGAAAATGCCACATCTTAGAACTCTACGTCTTCACTCCAATCCGATCAGATGTAACTGT
CACATGGCCTGGCTTGCTGATTGGTTATCAGACCGACCGACCATGGCTGTATTTACCCAA
TGTGCCGAACCGATTAGTTTGCGAGGATTGAACCTGGCGTCAGCTGACCGGAGCGAATTT
CTTTGCAACGAAATCACTGCCCAGCGTGCACCCACATGTGAAATAACATCATGTCCAGCA
GCATGTATTTGTATCAATGGCATTGTGGATTGCAGAGACCGTGGCCTCACAGTATTGCCC
GCCACCTTTCCCCTTGATACAACTGAACTGCGCCTTGAGCAAAATCGAATTCAGATAATT
CCAAGTTTTTCCTTTTCATCGTACCCACAACTTCGCAGAATCGATTTGAGCAACAACGAA
ATTAAAGAAATCGAGCGAGATGCTTTTGATGGACTTTCACAACTATCTTCATTAGTTATG
TACGGAAACAAGATTACATCACTGCCAGCTGGTATTTTTACTCACATGCACAACCTGCAG
ATGCTATTAATGAATGCAAATAAGATCAAATGTTTGCGGCAAGATGTGTTCAGTGGATTG
CGTTCTCTCACATTACTATCATTATATGACAACAAACTGCAGTCCATATCCAGGGGAACC
TTTGCTAACCTACGATCCATAGAAACAATGCACTTGGCTCAAAATCCGTTTATCTGTGAC
TGCCATATGAGGTGGTTGGTGAATTATGTAAAAAAGTACAAAGTTGAAACATCAGGTGCA
AAATGTGCTGGTCCACGACGATTAGCTGGCAAAAAAATATCTTCTGCCAAAACAAGAAAA
ATGAGATGCAATGGTAAAAATATCATTTTTTCGTATATTTATGCATCGGGTATAGCAGCA
GAATGTATACCAGAAGCTGAATGCCCCAACCAATGTCGATGTGATGGATCTATTGTGGAT
TGCTCAAGACAAGCGCTCACTGCTATTCCTGATAACATTCCACCTTATGCTTCTGAATTA
TTTTTGAACCACAATCGGATACAGATGATAACAAGTGTCGGTTTGTTTCAAAAATTAAGA
AATTTGAAGAAAATTGACCTTTCTAACAACCAGCTTACTGCAATCGAGGATGGAGCTTTT
TCTGGGGCTGGGAGTGTTCTAGAACTTTGGTTGAACCACAATGTGCTCACTGATATTCGG
GGATCAATGTTCAGTGGACTTAACAATCTACGTACTTTAATGGTTCGAAACAACCATCTC
ATGTGCATTGGGAACCATACATTTGCTGGGCTATCCACTGTACGACATCTTGACCTGTAC
TCCAACCAGATAGCCACCATTCTTAGTGGGGCATTCGCCACTATGTCATCACTAAGCACA
CTAAATCTTTTATCGAATCCACTCGACTGTAACTGCCACTTATCTTGGTTGTCAACATGG
TTACGACGAAGTCCCGTCTCATCAGGCAACCCACGATGTGCTGAACCCCGATTTCTAAGG
GAATTCCCCGTAGCTGATATTAACCCCAGGGATTTCCGATGCAGCACAGAACAAGAGGCA
CGGGCGGCACCAACGTGTCTGCCTGTCCAAAAGTGCCCAGAACAATGTACATGTGAAGGA
ACTATTGTTCGATGCGCCAACACAGGGTTAACATCGGTCCCTGTAGACGACATACCCCAT
GATGTCACTGAACTATACTTGGAGATGAATGATATTAGGGAAATCCCCGCATCAATAAAG
AAATTTATCTATCTCACTACTTTGGATCTGAGCAACAATGACATATCCAGCATAAATGAT
TGGATGTTTTCCAACTTAACACGATTATCTACTTTGCTATTGGCATACAACCGATTGCGG
TGTATTCCACCCAAAGCATTCACCGGTCTCCGATCACTCAGGATACTTTCCCTTCACAGT
AATGAACTTTCAAGTTTACCGGAAGGTGCATTTGATGACCTGACTTCCCTGTCCCATGTG
GGATTTGGGGCCAATCCTTGGTACTGTGATTGCAATCTACGTTGGTTCAGCCAGTGGGTG
AAATCAGATTTCTTCGAAGCAGGAATCGCACGATGCTCTGGTCCCCCTCGGATGGCTGGC
CGCCTTCTTCTCTCATCGTCACTTGAAACTTTTGTGTGTCAAGGACCACTGGACATCGCC
ATAGCTGTGAAATGTAACCCGTGTCTGTCCTCTCCATGCCAGCACAACTCAACTTGTGGT
GTGCACCCCACTGATTACTACCAATGCACATGCCAACCAGGTTTCAAAGGGAGGCATTGT
GAGATGCCGATAGACCCTTGCATATTGGAGCCATGTCACAACGGTGCTAGATGTATAGCA
CGAGATGAGGCTGTATATAATTGTGAGTGTGTGGTTGGATTCAGTGGCGATAGATGTGAG
AACAATATCAATGACTGCACAGCTACCTCATGCCCAGTGTCGAATGCAACATGTATTGAT
GGGGTCAACACCTTTACGTGCCGCTGCCCAGTGGGCTGGACTGGGACCAATTGTAATGAA
CAGATACCAGACCCATGCACATTAGAACAACCATGCCAACATGGTGGATCTTGTGTCTTG
TTACAAGAAATCGATGCTATATCTTACAGATGTGACTGTAGCAGTGGGTACCGTGGGGTG
AACTGTAGTGAACGTTTTGATCCCTGTCTCAGCCACAAGTGCGAGAACAATGGCCTCTGT
GAGATTAACCAACAATCGCCCATCGGATACCAGTGCAATTGTGTAGGGGAATATCGAGGC
CAATACTGCACATTTCCTATGGATATAGTCGATGTGTTGCAAGATGACCCGTGTTCGGAC
AATGATTGTCAGCATGGATCTGAATGTTATATCGAGGACGGGAGAGATTATAAATGTCGC
TGTTTGCCGGGCTATGCTGGGAATAAGTGTCAGCAGCTTGTAAGCCTCAGTTTCCAACGA
AACGGGAGTTTCATAGAGACCCAGCAGCAAGGACTCGTCGACACCAACTTCACATTCATC
ATCTCAACCACACAGCTAAACGGAGTTCTAATGTACGATGGGGACAGCACTGGGTCATCT
AGGGAACATCTTGCCATTGAGTTTTTCACCGGTCATGTCCGTGTCAGCTACGATTTAGGG
ATTTCCCCAGGATCCACCATCTACAGTCAGATTCCGATCAATGATGGAACTCCACATAAG
GTTGAGCTGATCATTCGTGACCGCCTGGTGTCACTAAAGATTGACAACGGAAAAACGATC
AAGGAAACCATGACATCATCAATGACATCATCAAGCGAGGTCATAGGGTCGGAAGCTTTA
TCCCCACTCTTCATCGGAGGAATCAGAGCTGACCTACTCAGGTCAGCAAGAAGGTTCTGG
CACATCAGGAACACAACCAGTTTTAAAGGTTGTATCCATGGTCTCTACATCAACCAATCC
CAGCTGGAGTTCAATGATCTCATGCCTGTTGATGATCTCATCAGTGACATCAGGCCTGGT
TGCCAAGGAGATGGAGGGTCATGCTCGGCTGCACGTTGTACCCATGGACAATGTGTCTTT
GTAGCAGGAAGAGGAATAACCTGTAGATGCGATGCAGGGTATACAGGTGAGAGTTGCAAC
ACTAGGGCGACACCATGTGCAACGAATGCATGCCAACACGGAACATGTAGACCGAACGGG
GCATCGTATACCTGCGAGTGCGAGAAAGGTATGTTGCACGGCAGACATTGCGAAACACTT
GATTATTGTGCTGGTGTAGATTGTAGAAGAGGGCACTGTGTGTCAACTGACATTGGATAC
CAGTGCAAATGTAAGAAGCACTTTACTGGGAGGCATTGCCAAATTAGAATACGATCTTGT
CCTGGTACGAGGATCAAGCAATACTACCAAGTGAGTCGTGTCAGCAAGAGCCGTACACGA
TCTGTCAATGGAATGACCAGATGTCGGAGCAGAAGACGTTTCACAAACATGGTTTGTTCT
GGGGCCTGTCCGGCGCGTCGACGCTCCCGCACAAGTCGTGCATCTGTGTTTGGTCAATCG
GACGCTGCTTCTACATCGTGTTGCAAACCACTACGTGTACAAAGCAAACGTATTCGCATG
AAATGCAGCGATGGATCTCTGATACACCAAGTTCTGCAAAAAGTACGAAAATGCGGATGT
CAGTCTTGCTCTTGA
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-107] 1.0E-22 - T[115-331] 1.5E-65 - T[345-563] 4.3E-62 - T[569-756] 1.2E-57 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[2-56] 2.8E-8 - T[148-205] 1.1E-12 - T[218-276] 5.5E-12 - T[400-460] 9.1E-14 - T[648-699] 2.9E-12 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[18-41] 0.022 - T[43-66] 110.0 - T[148-167] 210.0 - T[168-191] 0.98 - T[192-215] 0.0057 - T[216-239] 2.2 - T[240-263] 0.0035 - T[399-422] 2.4E-5 - T[424-446] 140.0 - T[447-470] 0.43 - T[471-494] 3.3 - T[622-645] 14.0 - T[646-669] 0.0023 - T[670-693] 1.2E-5 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[20-41] 7.288 - T[45-66] 5.671 - T[146-167] 5.656 - T[170-191] 7.319 - T[194-215] 5.918 - T[218-239] 5.202 - T[242-263] 6.48 - T[376-397] 4.832 - T[401-422] 7.897 - T[425-446] 5.833 - T[449-470] 6.01 - T[473-494] 5.871 - T[497-518] 5.895 - T[601-622] 5.332 - T[624-645] 8.259 - T[648-669] 6.472 - T[672-693] 7.204 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[54-103] 1.8E-5 - T[275-324] 1.9E-6 - T[506-555] 3.1E-8 - T[705-754] 1.0E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[78-102] 2.3 - T[300-313] 21.0 - T[530-555] 8.5E-4 - T[730-753] 0.028 |
| SMART |
LRRNT (IPR000372) - T[117-149] 7.6E-7 - T[347-379] 1.2E-5 - T[571-604] 1.9E-4 |
| Pfam |
LRRNT (IPR000372) - T[118-144] 4.4E-6 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[764-801] 0.18 - T[803-840] 0.016 - T[842-879] 5.9E-7 - T[884-923] 0.75 - T[974-1011] 0.92 - T[1246-1278] 0.03 - T[1279-1314] 0.022 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[766-801] 16.582 - T[803-840] 19.917 - T[842-879] 17.39 - T[882-923] 18.554 - T[925-964] 15.145 - T[974-1011] 18.317 - T[1204-1240] 12.265 - T[1242-1278] 10.092 - T[1279-1314] 12.561 |
| SMART |
EGF-like_dom (IPR000742) - T[767-801] 0.0031 - T[806-840] 9.7E-6 - T[845-879] 0.001 - T[885-923] 1.9E-6 - T[928-964] 0.1 - T[977-1011] 6.0E-5 - T[1207-1240] 0.005 - T[1245-1278] 9.6E-4 - T[1282-1314] 0.0023 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[789-800] . - T[789-800] . - T[828-839] . - T[828-839] . - T[867-878] . - T[867-878] . - T[911-922] . - T[911-922] . - T[952-963] . - T[999-1010] . - T[999-1010] . - T[1228-1239] . - T[1228-1239] . - T[1302-1313] . |
| Pfam |
EGF-like_dom (IPR000742) - T[810-838] 1.6E-5 - T[855-876] 1.2E-5 - T[886-920] 8.3E-7 - T[978-1008] 3.1E-5 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[842-867] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[858-869] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[999-1201] 4.75E-30 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[1014-1201] 31.754 |
| SMART |
Laminin_G (IPR001791) - T[1033-1180] 3.4E-26 |
| Pfam |
Laminin_G (IPR001791) - T[1041-1179] 4.6E-21 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[1320-1424] 11.249 |
| SMART |
Cys_knot_C (IPR006207) - T[1336-1424] 3.7E-4 |
| ProSitePatterns |
Cys_knot_C (IPR006207) - T[1387-1423] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 45.556 % | 1214 | 0 |
| SLIT3_HUMAN | 43.493 % | 1176 | 0 |
| SLIT2_HUMAN | 44.986 % | 1236 | 0 |