- Transcript 'Cisavi.CG.ENS81.R148...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R148.436988-458312.10144.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
R148 [436,987 / 458,312]
Amino acid sequence
Length: 1,251
>Cisavi.CG.ENS81.R148.436988-458312.10144.p
QLDLNLITCIQDQTFRPLRRLEVLTLNNNNLTHVSPLVLRGKMPHLRTLRLHSNPIRCNC
HMAWLADWLSDRPTMAVFTQCAEPISLRGLNLASADRSEFLCNEITAQRAPTCEITSCPA
ACICINGIVDCRDRGLTVLPATFPLDTTELRLEQNRIQIIPSFSFSSYPQLRRIDLSNNE
IKEIERDAFDGLSQLSSLVMYGNKITSLPAGIFTHMHNLQMLLMNANKIKCLRQDVFSGL
RSLTLLSLYDNKLQSISRGTFANLRSIETMHLAQNPFICDCHMRWLVNYVKKYKVETSGA
KCAGPRRLAGKKISSAKTRKMRCNGKNIIFSYIYASGIAAECIPEAECPNQCRCDGSIVD
CSRQALTAIPDNIPPYASELFLNHNRIQMITSVGLFQKLRNLKKIDLSNNQLTAIEDGAF
SGAGSVLELWLNHNVLTDIRGSMFSGLNNLRTLMVRNNHLMCIGNHTFAGLSTVRHLDLY
SNQIATILSGAFATMSSLSTLIIVHFLLLSRNLDRPRYRCYCVDIFFLNLLSNPLDCNCH
LSWLSTWLRRSPVSSGNPRCAEPRFLREFPVADINPRDFRCSTEQEARAAPTCLPVQKCP
EQCTCEGTIVRCANTGLTSVPVDDIPHDVTELYLEMNDIREIPASIKKFIYLTTFCECVV
GFSGDRCENNINDCTATSCPVSNATCIDGVNTFTCRCPVGWTGTNCNEQIPDPCTLEQPC
QHGGSCVLLQEIDAISYRCDCSSGYRGVNCSERFDPCLSHKCENNGLCEINQQSPIGYQC
NCVGEYRGQYCTFPMDIVDVLQDDPCSDNDCQHGSECYIEDGRDYKCRCLPGYAGNKCQQ
LVSLSFQRNGSFIETQQQGLVDTNFTFIISTTQLNGVLMYDGDSTGSSREHLAIEFFTGH
VRVSYDLGISPGSTIYSQIPINDGTPHKVELIIRDRLVSLKIDNGKTIKETMTSSMTSSS
EVIGSEALSPLFIGGIRADLLRSARRFWHIRNTTSFKGCIHGLYINQSQLEFNDLMPVDD
LISDIRPGCQGDGGSCSAARCTHGQCVFVAGRGITCRCDAGYTGESCNTRATPCATNACQ
HGTCRPNGASYTCECEKGFSGRHCETLDYCAGVDCRRGHCVSTDIGYQCKCKKHFTGRHC
QIRIRSCPGTRIKQYYQVSRVSKSRTRSVNGMTRCRSRRRFTNMVCSGACPARRRSRTSR
ASVFGQSDAASTSCCKPLRVQSKRIRMKCSDGSLIHQVLQKVRKCGCQSCS
Nucleotide sequence
Length: 3,756
>Cisavi.CG.ENS81.R148.436988-458312.10144.t
CAACTTGACCTGAACTTGATTACTTGCATACAAGACCAAACCTTCCGGCCCCTTCGAAGA
TTGGAGGTTCTCACTTTAAATAACAACAACCTAACACACGTGTCACCATTGGTACTTCGG
GGGAAAATGCCACATCTTAGAACTCTACGTCTTCACTCCAATCCGATCAGATGTAACTGT
CACATGGCCTGGCTTGCTGATTGGTTATCAGACCGACCGACCATGGCTGTATTTACCCAA
TGTGCCGAACCGATTAGTTTGCGAGGATTGAACCTGGCGTCAGCTGACCGGAGCGAATTT
CTTTGCAACGAAATCACTGCCCAGCGTGCACCCACATGTGAAATAACATCATGTCCAGCA
GCATGTATTTGTATCAATGGCATTGTGGATTGCAGAGACCGTGGCCTCACAGTATTGCCC
GCCACCTTTCCCCTTGATACAACTGAACTGCGCCTTGAGCAAAATCGAATTCAGATAATT
CCAAGTTTTTCCTTTTCATCGTACCCACAACTTCGCAGAATCGATTTGAGCAACAACGAA
ATTAAAGAAATCGAGCGAGATGCTTTTGATGGACTTTCACAACTATCTTCATTAGTTATG
TACGGAAACAAGATTACATCACTGCCAGCTGGTATTTTTACTCACATGCACAACCTGCAG
ATGCTATTAATGAATGCAAATAAGATCAAATGTTTGCGGCAAGATGTGTTCAGTGGATTG
CGTTCTCTCACATTACTATCATTATATGACAACAAACTGCAGTCCATATCCAGGGGAACC
TTTGCTAACCTACGATCCATAGAAACAATGCACTTGGCTCAAAATCCGTTTATCTGTGAC
TGCCATATGAGGTGGTTGGTGAATTATGTAAAAAAGTACAAAGTTGAAACATCAGGTGCA
AAATGTGCTGGTCCACGACGATTAGCTGGCAAAAAAATATCTTCTGCCAAAACAAGAAAA
ATGAGATGCAATGGTAAAAATATCATTTTTTCGTATATTTATGCATCGGGTATAGCAGCA
GAATGTATACCAGAAGCTGAATGCCCCAACCAATGTCGATGTGATGGATCTATTGTGGAT
TGCTCAAGACAAGCGCTCACTGCTATTCCTGATAACATTCCACCTTATGCTTCTGAATTA
TTTTTGAACCACAATCGGATACAGATGATAACAAGTGTCGGTTTGTTTCAAAAATTAAGA
AATTTGAAGAAAATTGACCTTTCTAACAACCAGCTTACTGCAATCGAGGATGGAGCTTTT
TCTGGGGCTGGGAGTGTTCTAGAACTTTGGTTGAACCACAATGTGCTCACTGATATTCGG
GGATCAATGTTCAGTGGACTTAACAATCTACGTACTTTAATGGTTCGAAACAACCATCTC
ATGTGCATTGGGAACCATACATTTGCTGGGCTATCCACTGTACGACATCTTGACCTGTAC
TCCAACCAGATAGCCACCATTCTTAGTGGGGCATTCGCCACTATGTCATCACTAAGCACA
CTCATAATAGTCCATTTTTTATTACTTTCTAGAAACTTAGACAGACCAAGGTACCGGTGT
TATTGCGTAGATATATTCTTTTTAAATCTTTTATCGAATCCACTCGACTGTAACTGCCAC
TTATCTTGGTTGTCAACATGGTTACGACGAAGTCCCGTCTCATCAGGCAACCCACGATGT
GCTGAACCCCGATTTCTAAGGGAATTCCCCGTAGCTGATATTAACCCCAGGGATTTCCGA
TGCAGCACAGAACAAGAGGCACGGGCGGCACCAACGTGTCTGCCTGTCCAAAAGTGCCCA
GAACAATGTACATGTGAAGGAACTATTGTTCGATGCGCCAACACAGGGTTAACATCGGTC
CCTGTAGACGACATACCCCATGATGTCACTGAACTATACTTGGAGATGAATGATATTAGG
GAAATCCCCGCATCAATAAAGAAATTTATCTATCTCACTACTTTTTGTGAGTGTGTGGTT
GGATTCAGTGGCGATAGATGTGAGAACAATATCAATGACTGCACAGCTACCTCATGCCCA
GTGTCGAATGCAACATGTATTGATGGGGTCAACACCTTTACGTGCCGCTGCCCAGTGGGC
TGGACTGGGACCAATTGTAATGAACAGATACCAGACCCATGCACATTAGAACAACCATGC
CAACATGGTGGATCTTGTGTCTTGTTACAAGAAATCGATGCTATATCTTACAGATGTGAC
TGTAGCAGTGGGTACCGTGGGGTGAACTGTAGTGAACGTTTTGATCCCTGTCTCAGCCAC
AAGTGCGAGAACAATGGCCTCTGTGAGATTAACCAACAATCGCCCATCGGATACCAGTGC
AATTGTGTAGGGGAATATCGAGGCCAATACTGCACATTTCCTATGGATATAGTCGATGTG
TTGCAAGATGACCCGTGTTCGGACAATGATTGTCAGCATGGATCTGAATGTTATATCGAG
GACGGGAGAGATTATAAATGTCGCTGTTTGCCGGGCTATGCTGGGAATAAGTGTCAGCAG
CTTGTAAGCCTCAGTTTCCAACGAAACGGGAGTTTCATAGAGACCCAGCAGCAAGGACTC
GTCGACACCAACTTCACATTCATCATCTCAACCACACAGCTAAACGGAGTTCTAATGTAC
GATGGGGACAGCACTGGGTCATCTAGGGAACATCTTGCCATTGAGTTTTTCACCGGTCAT
GTCCGTGTCAGCTACGATTTAGGGATTTCCCCAGGATCCACCATCTACAGTCAGATTCCG
ATCAATGATGGAACTCCACATAAGGTTGAGCTGATCATTCGTGACCGCCTGGTGTCACTA
AAGATTGACAACGGAAAAACGATCAAGGAAACCATGACATCATCAATGACATCATCAAGC
GAGGTCATAGGGTCGGAAGCTTTATCCCCACTCTTCATCGGAGGAATCAGAGCTGACCTA
CTCAGGTCAGCAAGAAGGTTCTGGCACATCAGGAACACAACCAGTTTTAAAGGTTGTATC
CATGGTCTCTACATCAACCAATCCCAGCTGGAGTTCAATGATCTCATGCCTGTTGATGAT
CTCATCAGTGACATCAGGCCTGGTTGCCAAGGAGATGGAGGGTCATGCTCGGCTGCACGT
TGTACCCATGGACAATGTGTCTTTGTAGCAGGAAGAGGAATAACCTGTAGATGCGATGCA
GGGTATACAGGTGAGAGTTGCAACACTAGGGCGACACCATGTGCAACGAATGCATGCCAA
CACGGAACATGTAGACCGAACGGGGCATCGTATACCTGCGAGTGCGAGAAAGGTTTCAGC
GGCAGACATTGCGAAACACTTGATTATTGTGCTGGTGTAGATTGTAGAAGAGGGCACTGT
GTGTCAACTGACATTGGATACCAGTGCAAATGTAAGAAGCACTTTACTGGGAGGCATTGC
CAAATTAGAATACGATCTTGTCCTGGTACGAGGATCAAGCAATACTACCAAGTGAGTCGT
GTCAGCAAGAGCCGTACACGATCTGTCAATGGAATGACCAGATGTCGGAGCAGAAGACGT
TTCACAAACATGGTTTGTTCTGGGGCCTGTCCGGCGCGTCGACGCTCCCGCACAAGTCGT
GCATCTGTGTTTGGTCAATCGGACGCTGCTTCTACATCGTGTTGCAAACCACTACGTGTA
CAAAGCAAACGTATTCGCATGAAATGCAGCGATGGATCTCTGATACACCAAGTTCTGCAA
AAAGTACGAAAATGCGGATGTCAGTCTTGCTCTTGA
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-107] 8.7E-23 - T[115-331] 1.2E-65 - T[345-588] 1.4E-58 - T[589-651] 1.7E-11 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[2-56] 2.4E-8 - T[148-205] 9.6E-13 - T[218-276] 4.8E-12 - T[400-460] 6.6E-14 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[18-41] 0.022 - T[43-66] 110.0 - T[148-167] 210.0 - T[168-191] 0.98 - T[192-215] 0.0057 - T[216-239] 2.2 - T[240-263] 0.0035 - T[399-422] 2.4E-5 - T[424-446] 140.0 - T[447-470] 0.43 - T[471-494] 3.3 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[20-41] 7.288 - T[45-66] 5.671 - T[146-167] 5.656 - T[170-191] 7.319 - T[194-215] 5.918 - T[218-239] 5.202 - T[242-263] 6.48 - T[376-397] 4.832 - T[401-422] 7.897 - T[425-446] 5.833 - T[449-470] 6.01 - T[473-494] 5.871 - T[628-649] 5.332 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[54-103] 1.8E-5 - T[275-324] 1.9E-6 - T[533-582] 3.1E-8 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[78-102] 2.0 - T[300-313] 18.0 - T[557-582] 7.4E-4 |
| SMART |
LRRNT (IPR000372) - T[117-149] 7.6E-7 - T[347-379] 1.2E-5 - T[598-631] 1.9E-4 |
| Pfam |
LRRNT (IPR000372) - T[118-144] 3.8E-6 |
| SMART |
EGF-like_dom (IPR000742) - T[592-668] 140.0 - T[673-707] 0.001 - T[713-751] 1.9E-6 - T[756-792] 0.1 - T[805-839] 6.0E-5 - T[1035-1068] 0.005 - T[1073-1105] 2.7E-6 - T[1109-1141] 0.0023 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[670-707] 5.9E-7 - T[712-751] 0.75 - T[802-839] 0.92 - T[1074-1105] 0.0095 - T[1106-1141] 0.022 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[670-707] 17.39 - T[710-751] 18.554 - T[753-792] 15.145 - T[802-839] 18.317 - T[1032-1068] 12.265 - T[1070-1105] 15.576 - T[1106-1141] 12.561 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[670-695] . |
| Pfam |
EGF-like_dom (IPR000742) - T[683-704] 1.0E-5 - T[714-748] 7.2E-7 - T[806-836] 2.7E-5 - T[1074-1103] 9.2E-5 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[686-697] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[695-706] . - T[695-706] . - T[739-750] . - T[739-750] . - T[780-791] . - T[827-838] . - T[827-838] . - T[1056-1067] . - T[1056-1067] . - T[1093-1104] . - T[1093-1104] . - T[1129-1140] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[827-1029] 3.76E-30 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[842-1029] 31.754 |
| SMART |
Laminin_G (IPR001791) - T[861-1008] 3.4E-26 |
| Pfam |
Laminin_G (IPR001791) - T[869-1007] 3.9E-21 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[1147-1251] 11.249 |
| SMART |
Cys_knot_C (IPR006207) - T[1163-1251] 3.7E-4 |
| ProSitePatterns |
Cys_knot_C (IPR006207) - T[1214-1250] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 43.048 % | 673 | 0 |
| SLIT3_HUMAN | 42.011 % | 666 | 0 |
| SLIT2_HUMAN | 42.105 % | 689 | 0 |