- Transcript 'Cisavi.CG.ENS81.R148...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R148.436988-458312.10146.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
R148 [437,476 / 458,309]
Amino acid sequence
Length: 1,207
>Cisavi.CG.ENS81.R148.436988-458312.10146.p
LDLNLITCIQDQTFRPLRRLEVLTLNNNNLTHVSPLVLRGKMPHLRTLRLHSNPIRCNCH
MAWLADWLSDRPTMAVFTQCAEPISLRGLNLASADRSEFLCNEITAQRAPTCEITSCPAA
CICINGIVDCRDRGLTVLPATFPLDTTELRLEQNRIQIIPSFSFSSYPQLRRIDLSNNEI
KEIERDAFDGLSQLSSLVMYGNKITSLPAGIFTHMHNLQMLLMNANKIKCLRQDVFSGLR
SLTLLSLYDNKLQSISRGTFANLRSIETMHLAQNPFICDCHMRWLVNYVKKYKVETSGAK
CAGPRRLAGKKISSAKTRKMRCNGKNIIFSASGIAAECIPEAECPNQCRCDGSIVDCSRQ
ALTAIPDNIPPYASELFLNHNRIQMITSVGLFQKLRNLKKIDLSNNQLTAIEDGAFSGAG
SVLELMVRNNHLMCIGNHTFAGLSTVRHLDLYSNQIATILSGAFATMSSLSTLNLLSNPL
DCNCHLSWLSTWLRRSPVSSGNPRCAEPRFLREFPVADINPRDFRCSTEQEARAAPTCLP
VQKCPEQCTCEGTIVRCANTGLTSVPVDDIPHDVTELYLEMNDIREIPASIKKFIYLTTL
DLSNNDISSINDWMFSNLTRLSTLLLAYNRLRCIPPKAFTGLRSLRILSLHSNELSSLPE
GAFDDLTSLSHVGFGANPWYCDCNLRWFSQWVKSDFFEAGIARCSGPPRMAGRLLLSSSL
ETFVCQGPLDIAIAVKCNPCLSSPCQHNSTCGVHPTDYYQCTCQPGFKGRHCEMPIDPCI
LEPCHNGARCIARDEAVYNCECVVGFSGDRCENNINDCTATSCPVSNATCIDGVNTFTCR
CPVGWTGTNCNEQIPDPCTLEQPCQHGGSCVLLQEIDAISYRCDCSSGYRGVNCSERFDP
CLSHKCENNGLCEINQQSPIGYQCNCVGEYRGQYCTFPMDIVDVLQDDPCSDNDCQHGSE
CYIEDGRDYKCRCLPGYAGNKCQQLVSLSFQRNGSFIETQQQGLVDTNFTFIISTTQLNG
VLMYDGDSTGSSREHLAIEFFTGHVRVSYDLGISPGSTIYSQIPINDGTPHKVELIIRDR
LVSLKIDNGKTIKETMTSSMTSSSEVIGSEALSPLFIGGIRADLLRSARRFWHIRNTTSF
KGCIHGLYINQSQLDSNKQLIIFSGFSGRHCETLDYCAGVDCRRGHCVSTDIGYQCKCKK
HFTGRHC
Nucleotide sequence
Length: 3,621
>Cisavi.CG.ENS81.R148.436988-458312.10146.t
CTTGACCTGAACTTGATTACTTGCATACAAGACCAAACCTTCCGGCCCCTTCGAAGATTG
GAGGTTCTCACTTTAAATAACAACAACCTAACACACGTGTCACCATTGGTACTTCGGGGG
AAAATGCCACATCTTAGAACTCTACGTCTTCACTCCAATCCGATCAGATGTAACTGTCAC
ATGGCCTGGCTTGCTGATTGGTTATCAGACCGACCGACCATGGCTGTATTTACCCAATGT
GCCGAACCGATTAGTTTGCGAGGATTGAACCTGGCGTCAGCTGACCGGAGCGAATTTCTT
TGCAACGAAATCACTGCCCAGCGTGCACCCACATGTGAAATAACATCATGTCCAGCAGCA
TGTATTTGTATCAATGGCATTGTGGATTGCAGAGACCGTGGCCTCACAGTATTGCCCGCC
ACCTTTCCCCTTGATACAACTGAACTGCGCCTTGAGCAAAATCGAATTCAGATAATTCCA
AGTTTTTCCTTTTCATCGTACCCACAACTTCGCAGAATCGATTTGAGCAACAACGAAATT
AAAGAAATCGAGCGAGATGCTTTTGATGGACTTTCACAACTATCTTCATTAGTTATGTAC
GGAAACAAGATTACATCACTGCCAGCTGGTATTTTTACTCACATGCACAACCTGCAGATG
CTATTAATGAATGCAAATAAGATCAAATGTTTGCGGCAAGATGTGTTCAGTGGATTGCGT
TCTCTCACATTACTATCATTATATGACAACAAACTGCAGTCCATATCCAGGGGAACCTTT
GCTAACCTACGATCCATAGAAACAATGCACTTGGCTCAAAATCCGTTTATCTGTGACTGC
CATATGAGGTGGTTGGTGAATTATGTAAAAAAGTACAAAGTTGAAACATCAGGTGCAAAA
TGTGCTGGTCCACGACGATTAGCTGGCAAAAAAATATCTTCTGCCAAAACAAGAAAAATG
AGATGCAATGGTAAAAATATCATTTTTTCTGCATCGGGTATAGCAGCAGAATGTATACCA
GAAGCTGAATGCCCCAACCAATGTCGATGTGATGGATCTATTGTGGATTGCTCAAGACAA
GCGCTCACTGCTATTCCTGATAACATTCCACCTTATGCTTCTGAATTATTTTTGAACCAC
AATCGGATACAGATGATAACAAGTGTCGGTTTGTTTCAAAAATTAAGAAATTTGAAGAAA
ATTGACCTTTCTAACAACCAGCTTACTGCAATCGAGGATGGAGCTTTTTCTGGGGCTGGG
AGTGTTCTAGAACTAATGGTTCGAAACAACCATCTCATGTGCATTGGGAACCATACATTT
GCTGGGCTATCCACTGTACGACATCTTGACCTGTACTCCAACCAGATAGCCACCATTCTT
AGTGGGGCATTCGCCACTATGTCATCACTAAGCACACTAAATCTTTTATCGAATCCACTC
GACTGTAACTGCCACTTATCTTGGTTGTCAACATGGTTACGACGAAGTCCCGTCTCATCA
GGCAACCCACGATGTGCTGAACCCCGATTTCTAAGGGAATTCCCCGTAGCTGATATTAAC
CCCAGGGATTTCCGATGCAGCACAGAACAAGAGGCACGGGCGGCACCAACGTGTCTGCCT
GTCCAAAAGTGCCCAGAACAATGTACATGTGAAGGAACTATTGTTCGATGCGCCAACACA
GGGTTAACATCGGTCCCTGTAGACGACATACCCCATGATGTCACTGAACTATACTTGGAG
ATGAATGATATTAGGGAAATCCCCGCATCAATAAAGAAATTTATCTATCTCACTACTTTG
GATCTGAGCAACAATGACATATCCAGCATAAATGATTGGATGTTTTCCAACTTAACACGA
TTATCTACTTTGCTATTGGCATACAACCGATTGCGGTGTATTCCACCCAAAGCATTCACC
GGTCTCCGATCACTCAGGATACTTTCCCTTCACAGTAATGAACTTTCAAGTTTACCGGAA
GGTGCATTTGATGACCTGACTTCCCTGTCCCATGTGGGATTTGGGGCCAATCCTTGGTAC
TGTGATTGCAATCTACGTTGGTTCAGCCAGTGGGTGAAATCAGATTTCTTCGAAGCAGGA
ATCGCACGATGCTCTGGTCCCCCTCGGATGGCTGGCCGCCTTCTTCTCTCATCGTCACTT
GAAACTTTTGTGTGTCAAGGACCACTGGACATCGCCATAGCTGTGAAATGTAACCCGTGT
CTGTCCTCTCCATGCCAGCACAACTCAACTTGTGGTGTGCACCCCACTGATTACTACCAA
TGCACATGCCAACCAGGTTTCAAAGGGAGGCATTGTGAGATGCCGATAGACCCTTGCATA
TTGGAGCCATGTCACAACGGTGCTAGATGTATAGCACGAGATGAGGCTGTATATAATTGT
GAGTGTGTGGTTGGATTCAGTGGCGATAGATGTGAGAACAATATCAATGACTGCACAGCT
ACCTCATGCCCAGTGTCGAATGCAACATGTATTGATGGGGTCAACACCTTTACGTGCCGC
TGCCCAGTGGGCTGGACTGGGACCAATTGTAATGAACAGATACCAGACCCATGCACATTA
GAACAACCATGCCAACATGGTGGATCTTGTGTCTTGTTACAAGAAATCGATGCTATATCT
TACAGATGTGACTGTAGCAGTGGGTACCGTGGGGTGAACTGTAGTGAACGTTTTGATCCC
TGTCTCAGCCACAAGTGCGAGAACAATGGCCTCTGTGAGATTAACCAACAATCGCCCATC
GGATACCAGTGCAATTGTGTAGGGGAATATCGAGGCCAATACTGCACATTTCCTATGGAT
ATAGTCGATGTGTTGCAAGATGACCCGTGTTCGGACAATGATTGTCAGCATGGATCTGAA
TGTTATATCGAGGACGGGAGAGATTATAAATGTCGCTGTTTGCCGGGCTATGCTGGGAAT
AAGTGTCAGCAGCTTGTAAGCCTCAGTTTCCAACGAAACGGGAGTTTCATAGAGACCCAG
CAGCAAGGACTCGTCGACACCAACTTCACATTCATCATCTCAACCACACAGCTAAACGGA
GTTCTAATGTACGATGGGGACAGCACTGGGTCATCTAGGGAACATCTTGCCATTGAGTTT
TTCACCGGTCATGTCCGTGTCAGCTACGATTTAGGGATTTCCCCAGGATCCACCATCTAC
AGTCAGATTCCGATCAATGATGGAACTCCACATAAGGTTGAGCTGATCATTCGTGACCGC
CTGGTGTCACTAAAGATTGACAACGGAAAAACGATCAAGGAAACCATGACATCATCAATG
ACATCATCAAGCGAGGTCATAGGGTCGGAAGCTTTATCCCCACTCTTCATCGGAGGAATC
AGAGCTGACCTACTCAGGTCAGCAAGAAGGTTCTGGCACATCAGGAACACAACCAGTTTT
AAAGGTTGTATCCATGGTCTCTACATCAACCAATCCCAGCTGGATTCGAATAAACAACTG
ATTATCTTCTCAGGTTTCAGCGGCAGACATTGCGAAACACTTGATTATTGTGCTGGTGTA
GATTGTAGAAGAGGGCACTGTGTGTCAACTGACATTGGATACCAGTGCAAATGTAAGAAG
CACTTTACTGGGAGGCATTGC
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-106] 1.0E-22 - T[114-329] 1.0E-65 - T[343-534] 4.1E-52 - T[541-728] 9.7E-58 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[1-55] 4.5E-8 - T[147-204] 9.2E-13 - T[217-275] 4.6E-12 - T[374-432] 7.6E-10 - T[620-671] 2.4E-12 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[17-40] 0.022 - T[42-65] 110.0 - T[147-166] 210.0 - T[167-190] 0.98 - T[191-214] 0.0057 - T[215-238] 2.2 - T[239-262] 0.0035 - T[395-418] 2.4E-5 - T[420-442] 280.0 - T[443-466] 3.3 - T[594-617] 14.0 - T[618-641] 0.0023 - T[642-665] 1.2E-5 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[19-40] 7.288 - T[44-65] 5.671 - T[145-166] 5.656 - T[169-190] 7.319 - T[193-214] 5.918 - T[217-238] 5.202 - T[241-262] 6.48 - T[372-393] 4.832 - T[397-418] 7.897 - T[445-466] 5.871 - T[469-490] 5.895 - T[573-594] 5.332 - T[596-617] 8.259 - T[620-641] 6.472 - T[644-665] 7.204 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[53-102] 1.8E-5 - T[274-323] 1.9E-6 - T[478-527] 3.1E-8 - T[677-726] 1.0E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[77-101] 1.9 - T[299-312] 18.0 - T[502-527] 7.1E-4 - T[702-725] 0.024 |
| SMART |
LRRNT (IPR000372) - T[116-148] 7.6E-7 - T[343-375] 1.2E-5 - T[543-576] 1.9E-4 |
| Pfam |
LRRNT (IPR000372) - T[117-143] 3.7E-6 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[736-773] 0.18 - T[775-812] 0.016 - T[814-851] 5.9E-7 - T[856-895] 0.75 - T[946-983] 0.92 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[738-773] 16.582 - T[775-812] 19.917 - T[814-851] 17.39 - T[854-895] 18.554 - T[897-936] 15.145 - T[946-983] 18.317 - T[1173-1207] 8.761 |
| SMART |
EGF-like_dom (IPR000742) - T[739-773] 0.0031 - T[778-812] 9.7E-6 - T[817-851] 0.001 - T[857-895] 1.9E-6 - T[900-936] 0.1 - T[949-983] 6.0E-5 - T[1176-1207] 31.0 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[761-772] . - T[761-772] . - T[800-811] . - T[800-811] . - T[839-850] . - T[839-850] . - T[883-894] . - T[883-894] . - T[924-935] . - T[971-982] . - T[971-982] . - T[1196-1207] . |
| Pfam |
EGF-like_dom (IPR000742) - T[782-810] 1.3E-5 - T[827-848] 1.0E-5 - T[858-892] 6.9E-7 - T[950-980] 2.6E-5 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[814-839] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[830-841] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[967-1177] 2.97E-30 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[986-1171] 30.247 |
| SMART |
Laminin_G (IPR001791) - T[1005-1152] 3.4E-26 |
| Pfam |
Laminin_G (IPR001791) - T[1013-1151] 3.7E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 46.13 % | 1094 | 0 |
| SLIT3_HUMAN | 44.462 % | 1065 | 0 |
| SLIT2_HUMAN | 46.377 % | 1118 | 0 |