- Clone 'cima856472' >
- Transcript 'Cisavi.CG.ENS81.R148...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R148.436988-458312.10147.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
R148 [437,476 / 457,797]
Amino acid sequence
Length: 1,135
>Cisavi.CG.ENS81.R148.436988-458312.10147.p
LHSNPIRCNCHMAWLADWLSDRPTMAVFTQCAEPISLRGLNLASADRSEFLCNEITAQRA
PTCEITSCPAACICINGIVDCRDRGLTVLPATFPLDTTELDLSNNEIKEIERDAFDGLSQ
LSSLVMYGNKITSLPAGIFTHMHNLQMLLMNANKIKCLRQDVFSGLRSLTLLSLYDNKLQ
SISRGTFANLRSIETMHLAQNPFICDCHMRWLVNYVKKYKVETSGAKCAGPRRLAGKKIS
SAKTRKMRCNGKNIIFSASGIAAECIPEAECPNQCRCDGSIVDCSRQALTAIPDNIPPYA
SELFLNHNRIQMITSVGLFQKLRNLKKIDLSNNQLTAIEDGAFSGAGSVLELMVRNNHLM
CIGNHTFAGLSTVRHLDLYSNQIATILSGAFATMSSLSTLNLLSNPLDCNCHLSWLSTWL
RRKARAAPTCLPVQKCPEQCTCEGESVGTFYTIYPIERLSFSKSDFNPPLINSAGTIVRC
ANTGLTSVPVDDIPHDVTELYLEMNDIREIPASIKKFIYLTTLDLSNNDISSINDWMFSN
LTRLSTLLLAYNRLRCIPPKAFTGLRSLRILSLHSNELSSLPEGAFDDLTSLSHVGFGAN
PWYCDCNLRWFSQWVKSDFFEAGIARCSGPPRMAGRLLLSSSLETFVCQGPLDIAIAVKC
NPCLSSPCQHNSTCGVHPTDYYQCTCQPGFKGRHCEMPIDPCILEPCHNGARCIARDEAV
YNCECVVGFSGDRCENNINDCTATSCPVSNATCIDGVNTFTCRCPVGWTGTNCNEQIPDP
CTLEQPCQHGGSCVLLQEIDAISYRCDCSSGYRGVNCSERFDPCLSHKCENNGLCEINQQ
SPIGYQCNCVGEYRGQYCTFPMDIVDVLQDDPCSDNDCQHGSECYIEDGRDYKCRCLPGY
AGNKCQQLVSLSFQRNGSFIETQQQGLVDTNFTFIISTTQLNGVLMYDGDSTGSSREHLA
IEFFTGHVRVSYDLGISPGSTIYSQIPINDGTPHKVELIIRDRLVSLKIDNGKTIKETMT
SSMTSSSEVIGSEALSPLFIGGIRADLLRSARRFWHIRNTTSFKGCIHGLYINQSQLEFN
DLMPSCNTRATPCFSGRHCETLDYCAGVDCRRGHCVSTDIGYQCKCKKHFTGRHC
Nucleotide sequence
Length: 3,405
>Cisavi.CG.ENS81.R148.436988-458312.10147.t
CTTCACTCCAATCCGATCAGATGTAACTGTCACATGGCCTGGCTTGCTGATTGGTTATCA
GACCGACCGACCATGGCTGTATTTACCCAATGTGCCGAACCGATTAGTTTGCGAGGATTG
AACCTGGCGTCAGCTGACCGGAGCGAATTTCTTTGCAACGAAATCACTGCCCAGCGTGCA
CCCACATGTGAAATAACATCATGTCCAGCAGCATGTATTTGTATCAATGGCATTGTGGAT
TGCAGAGACCGTGGCCTCACAGTATTGCCCGCCACCTTTCCCCTTGATACAACTGAACTC
GATTTGAGCAACAACGAAATTAAAGAAATCGAGCGAGATGCTTTTGATGGACTTTCACAA
CTATCTTCATTAGTTATGTACGGAAACAAGATTACATCACTGCCAGCTGGTATTTTTACT
CACATGCACAACCTGCAGATGCTATTAATGAATGCAAATAAGATCAAATGTTTGCGGCAA
GATGTGTTCAGTGGATTGCGTTCTCTCACATTACTATCATTATATGACAACAAACTGCAG
TCCATATCCAGGGGAACCTTTGCTAACCTACGATCCATAGAAACAATGCACTTGGCTCAA
AATCCGTTTATCTGTGACTGCCATATGAGGTGGTTGGTGAATTATGTAAAAAAGTACAAA
GTTGAAACATCAGGTGCAAAATGTGCTGGTCCACGACGATTAGCTGGCAAAAAAATATCT
TCTGCCAAAACAAGAAAAATGAGATGCAATGGTAAAAATATCATTTTTTCTGCATCGGGT
ATAGCAGCAGAATGTATACCAGAAGCTGAATGCCCCAACCAATGTCGATGTGATGGATCT
ATTGTGGATTGCTCAAGACAAGCGCTCACTGCTATTCCTGATAACATTCCACCTTATGCT
TCTGAATTATTTTTGAACCACAATCGGATACAGATGATAACAAGTGTCGGTTTGTTTCAA
AAATTAAGAAATTTGAAGAAAATTGACCTTTCTAACAACCAGCTTACTGCAATCGAGGAT
GGAGCTTTTTCTGGGGCTGGGAGTGTTCTAGAACTAATGGTTCGAAACAACCATCTCATG
TGCATTGGGAACCATACATTTGCTGGGCTATCCACTGTACGACATCTTGACCTGTACTCC
AACCAGATAGCCACCATTCTTAGTGGGGCATTCGCCACTATGTCATCACTAAGCACACTA
AATCTTTTATCGAATCCACTCGACTGTAACTGCCACTTATCTTGGTTGTCAACATGGTTA
CGACGAAAGGCACGGGCGGCACCAACGTGTCTGCCTGTCCAAAAGTGCCCAGAACAATGT
ACATGTGAAGGTGAGTCGGTGGGGACTTTTTACACAATTTATCCCATAGAAAGGTTGTCC
TTTTCAAAAAGTGACTTCAACCCCCCTTTAATAAATTCCGCAGGAACTATTGTTCGATGC
GCCAACACAGGGTTAACATCGGTCCCTGTAGACGACATACCCCATGATGTCACTGAACTA
TACTTGGAGATGAATGATATTAGGGAAATCCCCGCATCAATAAAGAAATTTATCTATCTC
ACTACTTTGGATCTGAGCAACAATGACATATCCAGCATAAATGATTGGATGTTTTCCAAC
TTAACACGATTATCTACTTTGCTATTGGCATACAACCGATTGCGGTGTATTCCACCCAAA
GCATTCACCGGTCTCCGATCACTCAGGATACTTTCCCTTCACAGTAATGAACTTTCAAGT
TTACCGGAAGGTGCATTTGATGACCTGACTTCCCTGTCCCATGTGGGATTTGGGGCCAAT
CCTTGGTACTGTGATTGCAATCTACGTTGGTTCAGCCAGTGGGTGAAATCAGATTTCTTC
GAAGCAGGAATCGCACGATGCTCTGGTCCCCCTCGGATGGCTGGCCGCCTTCTTCTCTCA
TCGTCACTTGAAACTTTTGTGTGTCAAGGACCACTGGACATCGCCATAGCTGTGAAATGT
AACCCGTGTCTGTCCTCTCCATGCCAGCACAACTCAACTTGTGGTGTGCACCCCACTGAT
TACTACCAATGCACATGCCAACCAGGTTTCAAAGGGAGGCATTGTGAGATGCCGATAGAC
CCTTGCATATTGGAGCCATGTCACAACGGTGCTAGATGTATAGCACGAGATGAGGCTGTA
TATAATTGTGAGTGTGTGGTTGGATTCAGTGGCGATAGATGTGAGAACAATATCAATGAC
TGCACAGCTACCTCATGCCCAGTGTCGAATGCAACATGTATTGATGGGGTCAACACCTTT
ACGTGCCGCTGCCCAGTGGGCTGGACTGGGACCAATTGTAATGAACAGATACCAGACCCA
TGCACATTAGAACAACCATGCCAACATGGTGGATCTTGTGTCTTGTTACAAGAAATCGAT
GCTATATCTTACAGATGTGACTGTAGCAGTGGGTACCGTGGGGTGAACTGTAGTGAACGT
TTTGATCCCTGTCTCAGCCACAAGTGCGAGAACAATGGCCTCTGTGAGATTAACCAACAA
TCGCCCATCGGATACCAGTGCAATTGTGTAGGGGAATATCGAGGCCAATACTGCACATTT
CCTATGGATATAGTCGATGTGTTGCAAGATGACCCGTGTTCGGACAATGATTGTCAGCAT
GGATCTGAATGTTATATCGAGGACGGGAGAGATTATAAATGTCGCTGTTTGCCGGGCTAT
GCTGGGAATAAGTGTCAGCAGCTTGTAAGCCTCAGTTTCCAACGAAACGGGAGTTTCATA
GAGACCCAGCAGCAAGGACTCGTCGACACCAACTTCACATTCATCATCTCAACCACACAG
CTAAACGGAGTTCTAATGTACGATGGGGACAGCACTGGGTCATCTAGGGAACATCTTGCC
ATTGAGTTTTTCACCGGTCATGTCCGTGTCAGCTACGATTTAGGGATTTCCCCAGGATCC
ACCATCTACAGTCAGATTCCGATCAATGATGGAACTCCACATAAGGTTGAGCTGATCATT
CGTGACCGCCTGGTGTCACTAAAGATTGACAACGGAAAAACGATCAAGGAAACCATGACA
TCATCAATGACATCATCAAGCGAGGTCATAGGGTCGGAAGCTTTATCCCCACTCTTCATC
GGAGGAATCAGAGCTGACCTACTCAGGTCAGCAAGAAGGTTCTGGCACATCAGGAACACA
ACCAGTTTTAAAGGTTGTATCCATGGTCTCTACATCAACCAATCCCAGCTGGAGTTCAAT
GATCTCATGCCTAGTTGCAACACTAGGGCGACACCATGTTTCAGCGGCAGACATTGCGAA
ACACTTGATTATTGTGCTGGTGTAGATTGTAGAAGAGGGCACTGTGTGTCAACTGACATT
GGATACCAGTGCAAATGTAAGAAGCACTTTACTGGGAGGCATTGC
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-61] 6.5E-9 - T[65-256] 9.7E-53 - T[270-433] 2.3E-44 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[4-53] 1.8E-5 - T[201-250] 1.9E-6 - T[405-441] 1.8 - T[600-649] 1.0E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[28-52] 1.8 - T[226-239] 17.0 - T[625-648] 0.022 |
| SMART |
LRRNT (IPR000372) - T[67-99] 7.6E-7 - T[270-302] 1.2E-5 - T[435-499] 6.7 |
| Pfam |
LRRNT (IPR000372) - T[68-94] 3.4E-6 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[96-117] 6.68 - T[120-141] 5.918 - T[144-165] 5.202 - T[168-189] 6.48 - T[299-320] 4.832 - T[324-345] 7.897 - T[372-393] 5.871 - T[396-417] 5.895 - T[496-517] 5.332 - T[519-540] 8.259 - T[543-564] 6.472 - T[567-588] 7.204 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[98-117] 14.0 - T[118-141] 0.0057 - T[142-165] 2.2 - T[166-189] 0.0035 - T[322-345] 2.4E-5 - T[347-369] 280.0 - T[370-393] 3.3 - T[517-540] 14.0 - T[541-564] 0.0023 - T[565-588] 1.2E-5 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[98-155] 9.7E-13 - T[301-359] 7.0E-10 - T[543-594] 2.2E-12 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[659-696] 0.18 - T[698-735] 0.016 - T[737-774] 5.9E-7 - T[779-818] 0.75 - T[869-906] 0.92 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[661-696] 16.582 - T[698-735] 19.917 - T[737-774] 17.39 - T[777-818] 18.554 - T[820-859] 15.145 - T[869-906] 18.317 - T[1101-1135] 8.761 |
| SMART |
EGF-like_dom (IPR000742) - T[662-696] 0.0031 - T[701-735] 9.7E-6 - T[740-774] 0.001 - T[780-818] 1.9E-6 - T[823-859] 0.1 - T[872-906] 6.0E-5 - T[1104-1135] 31.0 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[684-695] . - T[684-695] . - T[723-734] . - T[723-734] . - T[762-773] . - T[762-773] . - T[806-817] . - T[806-817] . - T[847-858] . - T[894-905] . - T[894-905] . - T[1124-1135] . |
| Pfam |
EGF-like_dom (IPR000742) - T[705-733] 1.1E-5 - T[750-771] 9.4E-6 - T[781-815] 6.4E-7 - T[873-903] 2.4E-5 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[737-762] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[753-764] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[894-1091] 1.42E-30 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[909-1093] 30.275 |
| SMART |
Laminin_G (IPR001791) - T[928-1075] 3.4E-26 |
| Pfam |
Laminin_G (IPR001791) - T[936-1074] 3.4E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 42.607 % | 944 | 0 |
| SLIT3_HUMAN | 41.951 % | 926 | 0 |
| SLIT2_HUMAN | 43.058 % | 962 | 0 |