- Transcript 'KH2012:KH.L154.61.v1...' >
- Transcript 'KH2012:KH.L154.61.v1...' >
- Transcript 'KH2012:KH.C5.245.v1....' >
- Molecular Tool 'Ci-Tbx6b-MO (Yagi's 25mer MO)' >
- Transcript 'Cisavi.CG.ENS81.R148...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R148.436988-458312.10148.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
R148 [438,777 / 455,419]
Amino acid sequence
Length: 804
>Cisavi.CG.ENS81.R148.436988-458312.10148.p
NRIQIIPSFSFSSYPQLRRIDLSNNEIKEIERDAFDGLSQLSSLVMYGNKITSLPAGIFT
HMHNLQMLLMNANKIKCLRQDVFSGLRSLTLLSLYDNKLQSISRGTFANLRSIETINLLS
NPLDCNCHLSWLSTWLRRSPVSSGNPRCAEPRFLREFPVADINPRDFRCSTEQEARAAPT
CLPVQKCPEQCTCEGTIVRCANTGLTSVPVDDIPHDVTELYLEMNDIREIPASIKKFIYL
TTLDLSNNDISSINDWMFSNLTRLSTLLLAYNRLRCIPPKAFTGLRSLRILSLHSNELSS
LPEGAFDDLTSLSHVGFGANPWYCDCNLRWFSQWVKSDFFEAGIARCSGPPRMAGRLLLS
SSLETFVCQGPLDIAIAVKCNPCLSSPCQHNSTCGVHPTDYYQCTCQPGFKGRHCEMPID
PCILEPCHNGARCIARDEAVYNCECVVGFSGDRCENNINDCTATSCPVSNATCIDGVNTF
TCRCPVGWTGTNCNEQIPDPCTLEQPCQHGGSCVLLQEIDAISYRCDCSSGYRGVNCSER
FDPCLSHKCENNGLCEINQQSPIGYQCNCVGEYRGQYCTFPMDIVDVLQDDPCSDNDCQH
GSECYIEDGRDYKCRCLPGYAGNKCQQLVSLSFQRNGSFIETQQQGLVDTNFTFIISTTQ
LNGVLMYDGDSTGSSREHLAIEFFTGHVRVSYDLGISPGSTIYSQIPINDGTPHKVELII
RDRLVSLKIDNGKTIKETMTSSMTSSSEVIGSEALSPLFIGGIRADLLRSARRFWHIRNT
TSFKGCIHGLYINQSQLEFNDLMP
Nucleotide sequence
Length: 2,412
>Cisavi.CG.ENS81.R148.436988-458312.10148.t
AATCGAATTCAGATAATTCCAAGTTTTTCCTTTTCATCGTACCCACAACTTCGCAGAATC
GATTTGAGCAACAACGAAATTAAAGAAATCGAGCGAGATGCTTTTGATGGACTTTCACAA
CTATCTTCATTAGTTATGTACGGAAACAAGATTACATCACTGCCAGCTGGTATTTTTACT
CACATGCACAACCTGCAGATGCTATTAATGAATGCAAATAAGATCAAATGTTTGCGGCAA
GATGTGTTCAGTGGATTGCGTTCTCTCACATTACTATCATTATATGACAACAAACTGCAG
TCCATATCCAGGGGAACCTTTGCTAACCTACGATCCATAGAAACAATAAATCTTTTATCG
AATCCACTCGACTGTAACTGCCACTTATCTTGGTTGTCAACATGGTTACGACGAAGTCCC
GTCTCATCAGGCAACCCACGATGTGCTGAACCCCGATTTCTAAGGGAATTCCCCGTAGCT
GATATTAACCCCAGGGATTTCCGATGCAGCACAGAACAAGAGGCACGGGCGGCACCAACG
TGTCTGCCTGTCCAAAAGTGCCCAGAACAATGTACATGTGAAGGAACTATTGTTCGATGC
GCCAACACAGGGTTAACATCGGTCCCTGTAGACGACATACCCCATGATGTCACTGAACTA
TACTTGGAGATGAATGATATTAGGGAAATCCCCGCATCAATAAAGAAATTTATCTATCTC
ACTACTTTGGATCTGAGCAACAATGACATATCCAGCATAAATGATTGGATGTTTTCCAAC
TTAACACGATTATCTACTTTGCTATTGGCATACAACCGATTGCGGTGTATTCCACCCAAA
GCATTCACCGGTCTCCGATCACTCAGGATACTTTCCCTTCACAGTAATGAACTTTCAAGT
TTACCGGAAGGTGCATTTGATGACCTGACTTCCCTGTCCCATGTGGGATTTGGGGCCAAT
CCTTGGTACTGTGATTGCAATCTACGTTGGTTCAGCCAGTGGGTGAAATCAGATTTCTTC
GAAGCAGGAATCGCACGATGCTCTGGTCCCCCTCGGATGGCTGGCCGCCTTCTTCTCTCA
TCGTCACTTGAAACTTTTGTGTGTCAAGGACCACTGGACATCGCCATAGCTGTGAAATGT
AACCCGTGTCTGTCCTCTCCATGCCAGCACAACTCAACTTGTGGTGTGCACCCCACTGAT
TACTACCAATGCACATGCCAACCAGGTTTCAAAGGGAGGCATTGTGAGATGCCGATAGAC
CCTTGCATATTGGAGCCATGTCACAACGGTGCTAGATGTATAGCACGAGATGAGGCTGTA
TATAATTGTGAGTGTGTGGTTGGATTCAGTGGCGATAGATGTGAGAACAATATCAATGAC
TGCACAGCTACCTCATGCCCAGTGTCGAATGCAACATGTATTGATGGGGTCAACACCTTT
ACGTGCCGCTGCCCAGTGGGCTGGACTGGGACCAATTGTAATGAACAGATACCAGACCCA
TGCACATTAGAACAACCATGCCAACATGGTGGATCTTGTGTCTTGTTACAAGAAATCGAT
GCTATATCTTACAGATGTGACTGTAGCAGTGGGTACCGTGGGGTGAACTGTAGTGAACGT
TTTGATCCCTGTCTCAGCCACAAGTGCGAGAACAATGGCCTCTGTGAGATTAACCAACAA
TCGCCCATCGGATACCAGTGCAATTGTGTAGGGGAATATCGAGGCCAATACTGCACATTT
CCTATGGATATAGTCGATGTGTTGCAAGATGACCCGTGTTCGGACAATGATTGTCAGCAT
GGATCTGAATGTTATATCGAGGACGGGAGAGATTATAAATGTCGCTGTTTGCCGGGCTAT
GCTGGGAATAAGTGTCAGCAGCTTGTAAGCCTCAGTTTCCAACGAAACGGGAGTTTCATA
GAGACCCAGCAGCAAGGACTCGTCGACACCAACTTCACATTCATCATCTCAACCACACAG
CTAAACGGAGTTCTAATGTACGATGGGGACAGCACTGGGTCATCTAGGGAACATCTTGCC
ATTGAGTTTTTCACCGGTCATGTCCGTGTCAGCTACGATTTAGGGATTTCCCCAGGATCC
ACCATCTACAGTCAGATTCCGATCAATGATGGAACTCCACATAAGGTTGAGCTGATCATT
CGTGACCGCCTGGTGTCACTAAAGATTGACAACGGAAAAACGATCAAGGAAACCATGACA
TCATCAATGACATCATCAAGCGAGGTCATAGGGTCGGAAGCTTTATCCCCACTCTTCATC
GGAGGAATCAGAGCTGACCTACTCAGGTCAGCAAGAAGGTTCTGGCACATCAGGAACACA
ACCAGTTTTAAAGGTTGTATCCATGGTCTCTACATCAACCAATCCCAGCTGGAGTTCAAT
GATCTCATGCCT
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-178] 1.6E-50 - T[184-371] 5.0E-58 |
| Pfam |
LRR_5 (IPR026906) - T[5-121] 7.1E-12 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[14-37] 0.98 - T[38-61] 0.0057 - T[62-85] 2.2 - T[86-109] 0.0035 - T[237-260] 14.0 - T[261-284] 0.0023 - T[285-308] 1.2E-5 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[16-37] 7.319 - T[40-61] 5.918 - T[64-85] 5.202 - T[88-109] 6.48 - T[112-133] 4.77 - T[216-237] 5.332 - T[239-260] 8.259 - T[263-284] 6.472 - T[287-308] 7.204 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[121-170] 3.1E-8 - T[320-369] 1.0E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[145-170] 4.4E-4 - T[345-368] 0.015 |
| SMART |
LRRNT (IPR000372) - T[186-219] 1.9E-4 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[240-261] 1.7 - T[263-314] 1.4E-12 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[379-416] 0.18 - T[418-455] 0.016 - T[457-494] 5.9E-7 - T[499-538] 0.75 - T[589-626] 0.92 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[381-416] 16.582 - T[418-455] 19.917 - T[457-494] 17.39 - T[497-538] 18.554 - T[540-579] 15.145 - T[589-626] 18.317 |
| SMART |
EGF-like_dom (IPR000742) - T[382-416] 0.0031 - T[421-455] 9.7E-6 - T[460-494] 0.001 - T[500-538] 1.9E-6 - T[543-579] 0.1 - T[592-626] 6.0E-5 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[404-415] . - T[404-415] . - T[443-454] . - T[443-454] . - T[482-493] . - T[482-493] . - T[526-537] . - T[526-537] . - T[567-578] . - T[614-625] . - T[614-625] . |
| Pfam |
EGF-like_dom (IPR000742) - T[425-453] 7.4E-6 - T[470-491] 6.4E-6 - T[501-535] 4.3E-7 - T[593-623] 1.6E-5 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[457-482] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[473-484] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[614-800] 1.15E-29 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[629-804] 28.769 |
| SMART |
Laminin_G (IPR001791) - T[648-795] 3.4E-26 |
| Pfam |
Laminin_G (IPR001791) - T[656-794] 2.0E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 43.797 % | 669 | 0 |
| SLIT3_HUMAN | 43.125 % | 669 | 0 |
| SLIT2_HUMAN | 42.965 % | 684 | 0 |