- Transcript 'Boleac.CG.SB_v3.S18....' >
- Transcript 'Cisavi.CG.ENS81.R15....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R15.1264403-1281617.12658.t
Possible name(s)
LRP4; LRP6
Gene model
Location
R15 [1,264,402 / 1,275,587]
Amino acid sequence
Length: 718
>Cisavi.CG.ENS81.R15.1264403-1281617.12658.p
LASPQCKCKRKQFACSVSAKCTCIPMAWKCDGDTDCGDSSDEIGCVLPTCHPKSFQCENG
KCINREWNCDGENDCGDDSDELNCPTEACDESTEKTCRSGGCVPKRWWCDGDDDCSDGSD
EVDSCLLGRSSCGETEFTCASGECVSRAFHCDGDFDCRDGSDEEYTGIDPDVISNESSNM
TECKAEEFSCAGEGPLAGHGQLDFCIPLEYVCDQELDCDNGVDEQNCSKVSHPCTAEQYR
CANGQCIGLHGHCDGQDDCGDGSDETNCPEYDECIHGEFRCKSGMCVSDSWRCDGDNDCN
DGSDEQNCAEEPVGCDDDQFECFTSKRCIRMSWRCDGEPDCTDRSDEVECDGSNLLPSNY
TSCDERNGGCEHTCRTSLGGRAQCVCAKGFELASDLSSYLDECAEEASCSQICNNTIGSF
VCSCLAGYSLRPDGRTCKASGPEAALLFTNRIDIKKILPDRSEFRSVLRDLENAIGLDYH
IEKGLMFWTDVTLDRIMRSYVNGSGVQQVVSSGLESPGGVAVDWIHNLLYWTDSGTSRVE
VSHLDGSYRKVLVWDNLEKPRALALHPLHSLMFWTDWGDSPRLESAAMDGSQRHTVASRN
LHWPNGITIDYTRNQIYWADAKYHIIEKANLDGGNRRAVISRGLLHPFGVAIFEDKLYWT
DWQSKSVNSANKFTGRGAKTIRSRLHFPMDIQTYHPLRQPKDINRCERSNCSHLCLPR
Nucleotide sequence
Length: 2,154
>Cisavi.CG.ENS81.R15.1264403-1281617.12658.t
CTCGCAAGTCCACAGTGCAAGTGCAAGCGCAAGCAGTTTGCGTGCTCAGTGAGTGCGAAA
TGTACGTGCATACCAATGGCGTGGAAGTGTGACGGGGACACCGACTGCGGCGACTCCAGT
GACGAGATTGGATGTGTACTGCCGACGTGCCACCCGAAATCGTTTCAGTGCGAGAACGGC
AAATGTATAAACCGGGAGTGGAATTGTGACGGCGAAAACGACTGTGGAGATGATAGCGAC
GAACTTAACTGTCCAACCGAGGCGTGCGACGAATCGACGGAGAAGACCTGCAGATCGGGA
GGTTGCGTGCCGAAGCGATGGTGGTGTGATGGGGATGACGATTGCTCGGACGGAAGTGAC
GAAGTAGATTCCTGCTTGTTAGGTCGGTCGAGCTGTGGGGAAACGGAGTTTACGTGTGCA
AGTGGGGAGTGTGTCAGTCGGGCTTTTCACTGCGATGGAGATTTTGACTGCAGAGATGGC
TCGGACGAGGAGTATACTGGGATCGACCCGGACGTGATCTCGAACGAATCGTCCAACATG
ACCGAGTGCAAAGCTGAGGAGTTTTCCTGCGCCGGAGAAGGTCCGCTGGCTGGACATGGT
CAGCTGGACTTCTGCATTCCACTCGAATACGTGTGCGACCAAGAGCTCGACTGCGACAAC
GGGGTGGACGAACAAAACTGCAGTAAAGTCAGTCACCCATGCACGGCCGAGCAATACAGA
TGCGCCAATGGTCAGTGCATTGGACTCCATGGTCACTGCGATGGACAGGACGATTGCGGG
GACGGAAGTGACGAAACGAATTGTCCCGAGTACGACGAATGCATCCACGGAGAGTTCAGG
TGCAAGAGCGGAATGTGTGTCAGCGATTCGTGGAGGTGTGATGGGGACAACGATTGCAAC
GATGGATCAGATGAACAGAACTGCGCTGAGGAACCGGTGGGCTGTGACGACGATCAGTTT
GAATGCTTCACCAGCAAACGTTGCATACGAATGAGCTGGAGGTGCGACGGCGAACCTGAT
TGCACGGATCGGAGCGACGAAGTTGAATGCGATGGATCGAACCTGCTACCAAGCAACTAT
ACTTCGTGCGACGAAAGGAACGGGGGCTGCGAGCATACGTGTCGTACGTCATTGGGGGGT
CGGGCGCAGTGCGTGTGCGCCAAAGGGTTCGAACTTGCTTCCGACCTTTCATCGTATCTC
GACGAGTGCGCTGAAGAAGCGTCATGCAGCCAAATCTGCAACAACACGATCGGGAGTTTC
GTTTGTTCCTGTTTGGCCGGGTATTCCCTCCGACCCGACGGGAGGACTTGCAAAGCGAGC
GGTCCGGAGGCTGCGCTCCTCTTCACCAACCGCATCGACATCAAGAAGATTCTTCCGGAT
CGATCGGAGTTTCGATCCGTCCTCCGAGACCTCGAGAACGCCATCGGATTAGATTACCAC
ATCGAAAAGGGACTGATGTTTTGGACTGATGTCACATTGGACCGCATTATGAGGTCATAC
GTGAATGGAAGTGGTGTCCAGCAGGTCGTTTCGTCGGGACTCGAAAGTCCAGGAGGGGTG
GCGGTGGATTGGATTCACAACCTGCTGTATTGGACTGACTCTGGTACTTCGAGGGTAGAA
GTATCGCATTTGGACGGATCATATAGGAAGGTGCTGGTGTGGGACAATCTAGAGAAGCCC
CGGGCGCTCGCGTTGCACCCACTGCACAGTTTGATGTTCTGGACCGACTGGGGGGACAGT
CCCCGATTAGAGAGCGCTGCAATGGACGGCAGCCAACGACACACAGTGGCTTCAAGGAAC
TTGCACTGGCCGAATGGAATAACGATCGACTACACGCGCAACCAGATATATTGGGCGGAT
GCCAAGTATCATATCATCGAGAAAGCGAACTTGGACGGGGGGAACAGACGAGCTGTAATA
AGCAGAGGTTTACTTCATCCGTTTGGTGTCGCTATATTCGAGGACAAGTTGTACTGGACA
GACTGGCAGAGCAAGAGTGTGAATAGCGCGAACAAATTCACCGGACGAGGAGCGAAGACG
ATTCGAAGTCGACTTCACTTTCCCATGGATATCCAGACTTACCATCCACTCAGACAGCCG
AAAGATATAAACAGGTGCGAACGAAGCAACTGTAGTCACCTCTGTCTCCCACGA
| PANTHER |
LRP4 (IPR030799) - T[6-191] 2.5E-258 - T[172-352] 2.5E-258 - T[360-717] 2.5E-258 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[7-47] 4.4E-11 - T[49-86] 8.9E-13 - T[88-127] 2.9E-11 - T[131-168] 4.1E-12 - T[182-229] 6.3E-6 - T[233-270] 7.7E-13 - T[273-310] 1.1E-13 - T[314-352] 8.4E-10 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[7-46] 12.7 - T[49-85] 14.488 - T[88-126] 12.713 - T[131-167] 12.137 - T[182-228] 11.963 - T[233-269] 13.762 - T[273-309] 14.637 - T[314-351] 13.062 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[7-45] 6.7E-8 - T[49-84] 2.6E-13 - T[88-125] 2.8E-8 - T[131-164] 1.5E-11 - T[182-227] 3.9E-6 - T[233-268] 7.4E-10 - T[273-308] 5.8E-12 - T[315-350] 2.4E-10 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[7-47] 3.53E-8 - T[43-85] 5.5E-12 - T[92-124] 1.96E-8 - T[131-165] 1.19E-9 - T[182-229] 1.01E-5 - T[231-269] 6.54E-11 - T[273-308] 8.9E-11 - T[314-350] 1.7E-9 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[8-45] 7.10686E-7 - T[50-84] 1.11771E-9 - T[132-164] 1.0933E-8 - T[183-227] 0.00500188 - T[234-268] 4.04103E-10 - T[274-308] 2.34895E-11 - T[315-350] 2.91103E-8 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[23-45] . - T[62-84] . - T[286-308] . - T[328-350] . |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[60-81] 3.4E-52 - T[100-121] 3.4E-52 - T[142-163] 3.4E-52 - T[244-265] 3.4E-52 - T[284-305] 3.4E-52 - T[326-347] 3.4E-52 |
| SMART |
EGF-like_dom (IPR000742) - T[273-309] 200.0 - T[362-398] 37.0 - T[402-438] 7.5E-4 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[400-437] 9.4E-8 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[400-438] 4.7E-6 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[413-424] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[422-437] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[442-718] 3.4E-117 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[464-506] 4.9E-5 - T[507-549] 7.3E-14 - T[550-593] 2.9E-10 - T[594-636] 7.5E-14 - T[637-678] 3.8E-6 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[484-526] 14.263 - T[527-569] 15.725 - T[570-613] 14.635 - T[614-656] 15.516 - T[657-697] 4.958 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[484-524] 2.6E-6 - T[527-567] 1.5E-9 - T[571-611] 3.7E-13 - T[614-653] 1.5E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP2_HUMAN | 38.248 % | 458 | 2.9E-141 |
| LRP4_HUMAN | 46.928 % | 652 | 0 |
| VLDLR_HUMAN | 38.251 % | 475 | 1.58E-156 |