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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S434...'
  2. Transcript 'Boschl.CG.Botznik201...'
  3. Transcript 'Cisavi.CG.ENS81.R15....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R15.1264403-1281617.12659.t

Possible name(s)

LRP4; LRP6

Location

R15 [1,264,411 / 1,277,273]

Sequences

Amino acid sequence

Length: 571

>Cisavi.CG.ENS81.R15.1264403-1281617.12659.p
PQCKCKRKQFACSVSAKCTCIPMAWKCDGDTDCGDSSDEIGCVLPTCHPKSFQCENGKCI
NREWNCDGENDCGDDSDELNCPTEACDESTEKTCRSGGCVPKRWWCDGDDDCSDGSDEVD
CSHPCTAEQYRCANGQCIGLHGHCDGQDDCGDGSDETNCRNNYTSCDERNGGCEHTCRTS
LGGRAQCVCAKGFELASDLSSCEDLDECAEEASCSQICNNTIGSFVCSCLAGYSLRPDGR
TCKASGPEAALLFTNRIDIKKILPDRSEFRSVLRDLENAIGLDYHIEKGLMFWTDVTLDR
IMRSYVNGSGVQQVVSSGLESPGGVAVDWIHNLLYWTDSGTSRVEVSHLDGSYRKVLVWD
NLEKPRALALHPLHSLMFWTDWGDSPRLESAAMDGSQRHTVASRNLHWPNGITIDYTRNQ
IYWADAKYHIIEKANLDGGNRRAVISRGEMKGCLLHPFGVAIFEDKLYWTDWQSKSVNSA
NKFTGRGAKTIRSRLHFPMDIQTYHPLRQPKGSSPNPCSVRNGGCTHLCLLSPNLDGVNG
GDILSTPYRCACPTGLTLSHDRHKCNTEMNK

Nucleotide sequence

Length: 1,713

>Cisavi.CG.ENS81.R15.1264403-1281617.12659.t
CCACAGTGCAAGTGCAAGCGCAAGCAGTTTGCGTGCTCAGTGAGTGCGAAATGTACGTGC
ATACCAATGGCGTGGAAGTGTGACGGGGACACCGACTGCGGCGACTCCAGTGACGAGATT
GGATGTGTACTGCCGACGTGCCACCCGAAATCGTTTCAGTGCGAGAACGGCAAATGTATA
AACCGGGAGTGGAATTGTGACGGCGAAAACGACTGTGGAGATGATAGCGACGAACTTAAC
TGTCCAACCGAGGCGTGCGACGAATCGACGGAGAAGACCTGCAGATCGGGAGGTTGCGTG
CCGAAGCGATGGTGGTGTGATGGGGATGACGATTGCTCGGACGGAAGTGACGAAGTAGAT
TGTAGTCACCCATGCACGGCCGAGCAATACAGATGCGCCAATGGTCAGTGCATTGGACTC
CATGGTCACTGCGATGGACAGGACGATTGCGGGGACGGAAGTGACGAAACGAATTGTCGT
AACAACTATACTTCGTGCGACGAAAGGAACGGGGGCTGCGAGCATACGTGTCGTACGTCA
TTGGGGGGTCGGGCGCAGTGCGTGTGCGCCAAAGGGTTCGAACTTGCTTCCGACCTTTCA
TCGTGTGAAGATCTCGACGAGTGCGCTGAAGAAGCGTCATGCAGCCAAATCTGCAACAAC
ACGATCGGGAGTTTCGTTTGTTCCTGTTTGGCCGGGTATTCCCTCCGACCCGACGGGAGG
ACTTGCAAAGCGAGCGGTCCGGAGGCTGCGCTCCTCTTCACCAACCGCATCGACATCAAG
AAGATTCTTCCGGATCGATCGGAGTTTCGATCCGTCCTCCGAGACCTCGAGAACGCCATC
GGATTAGATTACCACATCGAAAAGGGACTGATGTTTTGGACTGATGTCACATTGGACCGC
ATTATGAGGTCATACGTGAATGGAAGTGGTGTCCAGCAGGTCGTTTCGTCGGGACTCGAA
AGTCCAGGAGGGGTGGCGGTGGATTGGATTCACAACCTGCTGTATTGGACTGACTCTGGT
ACTTCGAGGGTAGAAGTATCGCATTTGGACGGATCATATAGGAAGGTGCTGGTGTGGGAC
AATCTAGAGAAGCCCCGGGCGCTCGCGTTGCACCCACTGCACAGTTTGATGTTCTGGACC
GACTGGGGGGACAGTCCCCGATTAGAGAGCGCTGCAATGGACGGCAGCCAACGACACACA
GTGGCTTCAAGGAACTTGCACTGGCCGAATGGAATAACGATCGACTACACGCGCAACCAG
ATATATTGGGCGGATGCCAAGTATCATATCATCGAGAAAGCGAACTTGGACGGGGGGAAC
AGACGAGCTGTAATAAGCAGAGGTGAAATGAAGGGTTGTTTACTTCATCCGTTTGGTGTC
GCTATATTCGAGGACAAGTTGTACTGGACAGACTGGCAGAGCAAGAGTGTGAATAGCGCG
AACAAATTCACCGGACGAGGAGCGAAGACGATTCGAAGTCGACTTCACTTTCCCATGGAT
ATCCAGACTTACCATCCACTCAGACAGCCGAAAGGTAGCTCCCCTAACCCATGCTCGGTA
CGGAATGGGGGATGCACCCATCTCTGCTTGCTCTCCCCCAACTTGGACGGGGTAAACGGG
GGGGATATTCTGTCGACCCCATACCGATGCGCCTGCCCCACCGGACTCACACTCAGCCAC
GACCGTCACAAGTGCAACACGGAGATGAACAAG

InterProScan

PANTHER
LRP4 (IPR030799) - T[3-571] 1.8E-237
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[4-43] 12.7 - T[46-82] 14.488 - T[85-122] 13.35 - T[124-160] 13.713
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[4-44] 4.4E-11 - T[46-83] 8.9E-13 - T[85-123] 2.0E-12 - T[124-161] 2.0E-12
SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[4-44] 2.36E-8 - T[41-82] 6.94E-12 - T[89-121] 3.53E-9 - T[123-160] 1.26E-10
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[4-42] 5.1E-8 - T[46-81] 2.0E-13 - T[85-121] 3.3E-9 - T[124-159] 5.6E-10
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[5-42] 9.99191E-8 - T[47-81] 1.45999E-10 - T[125-159] 4.8845E-11
PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[18-39] 1.4E-33 - T[57-78] 1.4E-33 - T[97-118] 1.4E-33 - T[135-156] 1.4E-33
ProSitePatterns
LDLR_class-A_CS (IPR023415) - T[20-42] . - T[137-159] .
SMART
EGF-like_dom (IPR000742) - T[124-160] 250.0 - T[165-203] 0.015 - T[207-243] 7.5E-4 - T[517-566] 0.86
SUPERFAMILY
Growth_fac_rcpt_cys_sf (IPR009030) - T[164-242] 1.57E-12 - T[503-566] 1.57E-12
ProSitePatterns
EGF-like_CS (IPR013032) - T[187-202] . - T[227-242] .
ProSiteProfiles
EGF-like_dom (IPR000742) - T[204-243] 9.188
ProSitePatterns
EGF_Ca-bd_CS (IPR018097) - T[204-227] .
Pfam
EGF-like_Ca-bd_dom (IPR001881) - T[204-242] 8.1E-9
SMART
EGF-like_Ca-bd_dom (IPR001881) - T[204-243] 5.8E-10
ProSitePatterns
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[218-229] .
Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[247-570] 1.4E-123
SMART
LDLR_classB_rpt (IPR000033) - T[269-311] 4.9E-5 - T[312-354] 7.3E-14 - T[355-398] 2.9E-10 - T[399-441] 7.5E-14 - T[442-488] 0.0092
ProSiteProfiles
LDLR_classB_rpt (IPR000033) - T[289-331] 14.263 - T[332-374] 15.725 - T[375-418] 14.635 - T[419-466] 13.08 - T[467-507] 4.958
Pfam
LDLR_classB_rpt (IPR000033) - T[289-329] 2.0E-6 - T[332-372] 1.1E-9 - T[376-416] 2.8E-13 - T[419-463] 2.0E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LRP4_HUMAN 50.242 % 595 0
VLDLR_HUMAN 34.409 % 407 2.2E-132
LRP8_HUMAN 35.161 % 407 1.42E-131