- Transcript 'Cisavi.CG.ENS81.R27....' >
- Transcript 'KH2012:KH.C9.386.v1....' >
- Transcript 'Boleac.CG.SB_v3.S434...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Cisavi.CG.ENS81.R15....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R15.1264403-1281617.12659.t
Possible name(s)
LRP4; LRP6
Gene model
Location
R15 [1,264,411 / 1,277,273]
Amino acid sequence
Length: 571
>Cisavi.CG.ENS81.R15.1264403-1281617.12659.p
PQCKCKRKQFACSVSAKCTCIPMAWKCDGDTDCGDSSDEIGCVLPTCHPKSFQCENGKCI
NREWNCDGENDCGDDSDELNCPTEACDESTEKTCRSGGCVPKRWWCDGDDDCSDGSDEVD
CSHPCTAEQYRCANGQCIGLHGHCDGQDDCGDGSDETNCRNNYTSCDERNGGCEHTCRTS
LGGRAQCVCAKGFELASDLSSCEDLDECAEEASCSQICNNTIGSFVCSCLAGYSLRPDGR
TCKASGPEAALLFTNRIDIKKILPDRSEFRSVLRDLENAIGLDYHIEKGLMFWTDVTLDR
IMRSYVNGSGVQQVVSSGLESPGGVAVDWIHNLLYWTDSGTSRVEVSHLDGSYRKVLVWD
NLEKPRALALHPLHSLMFWTDWGDSPRLESAAMDGSQRHTVASRNLHWPNGITIDYTRNQ
IYWADAKYHIIEKANLDGGNRRAVISRGEMKGCLLHPFGVAIFEDKLYWTDWQSKSVNSA
NKFTGRGAKTIRSRLHFPMDIQTYHPLRQPKGSSPNPCSVRNGGCTHLCLLSPNLDGVNG
GDILSTPYRCACPTGLTLSHDRHKCNTEMNK
Nucleotide sequence
Length: 1,713
>Cisavi.CG.ENS81.R15.1264403-1281617.12659.t
CCACAGTGCAAGTGCAAGCGCAAGCAGTTTGCGTGCTCAGTGAGTGCGAAATGTACGTGC
ATACCAATGGCGTGGAAGTGTGACGGGGACACCGACTGCGGCGACTCCAGTGACGAGATT
GGATGTGTACTGCCGACGTGCCACCCGAAATCGTTTCAGTGCGAGAACGGCAAATGTATA
AACCGGGAGTGGAATTGTGACGGCGAAAACGACTGTGGAGATGATAGCGACGAACTTAAC
TGTCCAACCGAGGCGTGCGACGAATCGACGGAGAAGACCTGCAGATCGGGAGGTTGCGTG
CCGAAGCGATGGTGGTGTGATGGGGATGACGATTGCTCGGACGGAAGTGACGAAGTAGAT
TGTAGTCACCCATGCACGGCCGAGCAATACAGATGCGCCAATGGTCAGTGCATTGGACTC
CATGGTCACTGCGATGGACAGGACGATTGCGGGGACGGAAGTGACGAAACGAATTGTCGT
AACAACTATACTTCGTGCGACGAAAGGAACGGGGGCTGCGAGCATACGTGTCGTACGTCA
TTGGGGGGTCGGGCGCAGTGCGTGTGCGCCAAAGGGTTCGAACTTGCTTCCGACCTTTCA
TCGTGTGAAGATCTCGACGAGTGCGCTGAAGAAGCGTCATGCAGCCAAATCTGCAACAAC
ACGATCGGGAGTTTCGTTTGTTCCTGTTTGGCCGGGTATTCCCTCCGACCCGACGGGAGG
ACTTGCAAAGCGAGCGGTCCGGAGGCTGCGCTCCTCTTCACCAACCGCATCGACATCAAG
AAGATTCTTCCGGATCGATCGGAGTTTCGATCCGTCCTCCGAGACCTCGAGAACGCCATC
GGATTAGATTACCACATCGAAAAGGGACTGATGTTTTGGACTGATGTCACATTGGACCGC
ATTATGAGGTCATACGTGAATGGAAGTGGTGTCCAGCAGGTCGTTTCGTCGGGACTCGAA
AGTCCAGGAGGGGTGGCGGTGGATTGGATTCACAACCTGCTGTATTGGACTGACTCTGGT
ACTTCGAGGGTAGAAGTATCGCATTTGGACGGATCATATAGGAAGGTGCTGGTGTGGGAC
AATCTAGAGAAGCCCCGGGCGCTCGCGTTGCACCCACTGCACAGTTTGATGTTCTGGACC
GACTGGGGGGACAGTCCCCGATTAGAGAGCGCTGCAATGGACGGCAGCCAACGACACACA
GTGGCTTCAAGGAACTTGCACTGGCCGAATGGAATAACGATCGACTACACGCGCAACCAG
ATATATTGGGCGGATGCCAAGTATCATATCATCGAGAAAGCGAACTTGGACGGGGGGAAC
AGACGAGCTGTAATAAGCAGAGGTGAAATGAAGGGTTGTTTACTTCATCCGTTTGGTGTC
GCTATATTCGAGGACAAGTTGTACTGGACAGACTGGCAGAGCAAGAGTGTGAATAGCGCG
AACAAATTCACCGGACGAGGAGCGAAGACGATTCGAAGTCGACTTCACTTTCCCATGGAT
ATCCAGACTTACCATCCACTCAGACAGCCGAAAGGTAGCTCCCCTAACCCATGCTCGGTA
CGGAATGGGGGATGCACCCATCTCTGCTTGCTCTCCCCCAACTTGGACGGGGTAAACGGG
GGGGATATTCTGTCGACCCCATACCGATGCGCCTGCCCCACCGGACTCACACTCAGCCAC
GACCGTCACAAGTGCAACACGGAGATGAACAAG
| PANTHER |
LRP4 (IPR030799) - T[3-571] 1.8E-237 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[4-43] 12.7 - T[46-82] 14.488 - T[85-122] 13.35 - T[124-160] 13.713 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[4-44] 4.4E-11 - T[46-83] 8.9E-13 - T[85-123] 2.0E-12 - T[124-161] 2.0E-12 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[4-44] 2.36E-8 - T[41-82] 6.94E-12 - T[89-121] 3.53E-9 - T[123-160] 1.26E-10 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[4-42] 5.1E-8 - T[46-81] 2.0E-13 - T[85-121] 3.3E-9 - T[124-159] 5.6E-10 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[5-42] 9.99191E-8 - T[47-81] 1.45999E-10 - T[125-159] 4.8845E-11 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[18-39] 1.4E-33 - T[57-78] 1.4E-33 - T[97-118] 1.4E-33 - T[135-156] 1.4E-33 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[20-42] . - T[137-159] . |
| SMART |
EGF-like_dom (IPR000742) - T[124-160] 250.0 - T[165-203] 0.015 - T[207-243] 7.5E-4 - T[517-566] 0.86 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[164-242] 1.57E-12 - T[503-566] 1.57E-12 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[187-202] . - T[227-242] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[204-243] 9.188 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[204-227] . |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[204-242] 8.1E-9 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[204-243] 5.8E-10 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[218-229] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[247-570] 1.4E-123 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[269-311] 4.9E-5 - T[312-354] 7.3E-14 - T[355-398] 2.9E-10 - T[399-441] 7.5E-14 - T[442-488] 0.0092 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[289-331] 14.263 - T[332-374] 15.725 - T[375-418] 14.635 - T[419-466] 13.08 - T[467-507] 4.958 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[289-329] 2.0E-6 - T[332-372] 1.1E-9 - T[376-416] 2.8E-13 - T[419-463] 2.0E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 50.242 % | 595 | 0 |
| VLDLR_HUMAN | 34.409 % | 407 | 2.2E-132 |
| LRP8_HUMAN | 35.161 % | 407 | 1.42E-131 |