- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.L112.2.v4....' >
- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'Cisavi.CG.ENS81.R2.7...' >
- Transcript 'Cisavi.CG.ENS81.R15....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R15.1264403-1281617.12660.t
Possible name(s)
LRP4; LRP6
Gene model
Location
R15 [1,264,420 / 1,277,270]
Amino acid sequence
Length: 749
>Cisavi.CG.ENS81.R15.1264403-1281617.12660.p
KCKRKQFACSVSAKCTCIPMAWKCDGDTDCGDSSDEIGCVLPTCHPKSFQCENGKCINRE
WNCDGENDCGDDSDELNCPTEACDESTEKTCRSGGCVPKRWWCDGDDDCSDGSDEVDCSR
SSCGETEFTCASGECVSRAFHCDGDFDCRDGSDEECGHPCTAEQYRCANGQCIGLHGHCD
GQDDCGDGSDETNCRNGTLMDVYGYNPPIPAAEYDECIHGEFRCKSGMCVSDSWRCDGDN
DCNDGSDEQNCAEEPVGCDDDQFECFTSKRCIRMSWRCDGEPDCTDRSDEVECGKRFAAC
GFDTCGSGMHRCNNGQCIGRFKVCDGVVDCLDFSDESPSRANYTSCDERNGGCEHTCRTS
LGGRAQCVCAKGFELASDLSSCEDLDECAEEASCSQICNNTIGSFVCSCLAGYSLRPDGR
TCKASGPEAALLFTNRIDIKKILPDRSEFRSVLRDLENAIGLDYHIEKGLMFWTDVTLDR
IMRSYVNGSGVQQVVSSGLESPGGVAVDWIHNLLYWTDSGTSRVEVSHLDGSYRKVLVWD
NLEKPRALALHPLHSLMFWTDWGDSPRLESAAMDGSQRHTVASRNLHWPNGITIDYTRNQ
IYWADAKYHIIEKANLDGGNRRAVISRGEMKGLLHPFGVAIFEDKLYWTDWQSKSVNSAN
KFTGRGAKTIRSRLHFPMDIQTYHPLRQPKGSSPNPCSVRNGGCTHLCLLSPNLDGVNGG
DILSTPYRCACPTGLTLSHDRHKCNTEMN
Nucleotide sequence
Length: 2,247
>Cisavi.CG.ENS81.R15.1264403-1281617.12660.t
AAGTGCAAGCGCAAGCAGTTTGCGTGCTCAGTGAGTGCGAAATGTACGTGCATACCAATG
GCGTGGAAGTGTGACGGGGACACCGACTGCGGCGACTCCAGTGACGAGATTGGATGTGTA
CTGCCGACGTGCCACCCGAAATCGTTTCAGTGCGAGAACGGCAAATGTATAAACCGGGAG
TGGAATTGTGACGGCGAAAACGACTGTGGAGATGATAGCGACGAACTTAACTGTCCAACC
GAGGCGTGCGACGAATCGACGGAGAAGACCTGCAGATCGGGAGGTTGCGTGCCGAAGCGA
TGGTGGTGTGATGGGGATGACGATTGCTCGGACGGAAGTGACGAAGTAGATTGTAGTCGG
TCGAGCTGTGGGGAAACGGAGTTTACGTGTGCAAGTGGGGAGTGTGTCAGTCGGGCTTTT
CACTGCGATGGAGATTTTGACTGCAGAGATGGCTCGGACGAGGAGTGTGGTCACCCATGC
ACGGCCGAGCAATACAGATGCGCCAATGGTCAGTGCATTGGACTCCATGGTCACTGCGAT
GGACAGGACGATTGCGGGGACGGAAGTGACGAAACGAATTGTCGTAATGGCACGCTTATG
GATGTATATGGTTATAATCCTCCCATACCCGCAGCCGAGTACGACGAATGCATCCACGGA
GAGTTCAGGTGCAAGAGCGGAATGTGTGTCAGCGATTCGTGGAGGTGTGATGGGGACAAC
GATTGCAACGATGGATCAGATGAACAGAACTGCGCTGAGGAACCGGTGGGCTGTGACGAC
GATCAGTTTGAATGCTTCACCAGCAAACGTTGCATACGAATGAGCTGGAGGTGCGACGGC
GAACCTGATTGCACGGATCGGAGCGACGAAGTTGAATGCGGTAAGCGCTTTGCGGCATGC
GGCTTTGACACGTGTGGAAGCGGAATGCATCGGTGCAACAACGGGCAATGTATTGGGAGA
TTCAAAGTGTGCGACGGGGTGGTGGATTGCCTCGATTTCTCGGATGAAAGTCCCAGCAGG
GCCAACTATACTTCGTGCGACGAAAGGAACGGGGGCTGCGAGCATACGTGTCGTACGTCA
TTGGGGGGTCGGGCGCAGTGCGTGTGCGCCAAAGGGTTCGAACTTGCTTCCGACCTTTCA
TCGTGTGAAGATCTCGACGAGTGCGCTGAAGAAGCGTCATGCAGCCAAATCTGCAACAAC
ACGATCGGGAGTTTCGTTTGTTCCTGTTTGGCCGGGTATTCCCTCCGACCCGACGGGAGG
ACTTGCAAAGCGAGCGGTCCGGAGGCTGCGCTCCTCTTCACCAACCGCATCGACATCAAG
AAGATTCTTCCGGATCGATCGGAGTTTCGATCCGTCCTCCGAGACCTCGAGAACGCCATC
GGATTAGATTACCACATCGAAAAGGGACTGATGTTTTGGACTGATGTCACATTGGACCGC
ATTATGAGGTCATACGTGAATGGAAGTGGTGTCCAGCAGGTCGTTTCGTCGGGACTCGAA
AGTCCAGGAGGGGTGGCGGTGGATTGGATTCACAACCTGCTGTATTGGACTGACTCTGGT
ACTTCGAGGGTAGAAGTATCGCATTTGGACGGATCATATAGGAAGGTGCTGGTGTGGGAC
AATCTAGAGAAGCCCCGGGCGCTCGCGTTGCACCCACTGCACAGTTTGATGTTCTGGACC
GACTGGGGGGACAGTCCCCGATTAGAGAGCGCTGCAATGGACGGCAGCCAACGACACACA
GTGGCTTCAAGGAACTTGCACTGGCCGAATGGAATAACGATCGACTACACGCGCAACCAG
ATATATTGGGCGGATGCCAAGTATCATATCATCGAGAAAGCGAACTTGGACGGGGGGAAC
AGACGAGCTGTAATAAGCAGAGGTGAAATGAAGGGTTTACTTCATCCGTTTGGTGTCGCT
ATATTCGAGGACAAGTTGTACTGGACAGACTGGCAGAGCAAGAGTGTGAATAGCGCGAAC
AAATTCACCGGACGAGGAGCGAAGACGATTCGAAGTCGACTTCACTTTCCCATGGATATC
CAGACTTACCATCCACTCAGACAGCCGAAAGGTAGCTCCCCTAACCCATGCTCGGTACGG
AATGGGGGATGCACCCATCTCTGCTTGCTCTCCCCCAACTTGGACGGGGTAAACGGGGGG
GATATTCTGTCGACCCCATACCGATGCGCCTGCCCCACCGGACTCACACTCAGCCACGAC
CGTCACAAGTGCAACACGGAGATGAAC
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[1-40] 12.7 - T[43-79] 14.488 - T[82-119] 13.35 - T[122-157] 13.413 - T[159-195] 13.713 - T[216-252] 14.637 - T[257-294] 13.05 - T[304-347] 11.137 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[1-41] 4.4E-11 - T[43-80] 8.9E-13 - T[82-120] 2.5E-12 - T[122-158] 5.5E-11 - T[159-196] 2.0E-12 - T[216-253] 1.1E-13 - T[257-295] 7.9E-11 - T[304-345] 4.5E-11 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[1-39] 9.1E-9 - T[43-78] 2.7E-13 - T[82-118] 4.5E-9 - T[122-155] 4.9E-10 - T[159-194] 7.8E-10 - T[216-251] 6.1E-12 - T[258-293] 2.5E-10 - T[304-336] 3.9E-9 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[2-39] 7.55774E-7 - T[44-78] 1.18844E-9 - T[123-155] 1.18553E-8 - T[160-194] 4.33886E-10 - T[217-251] 2.57169E-11 - T[258-293] 3.09546E-8 - T[305-336] 2.3074E-7 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[2-41] 2.75E-8 - T[38-79] 1.02E-11 - T[86-118] 5.11E-9 - T[122-155] 1.57E-8 - T[159-196] 1.28E-10 - T[216-251] 9.29E-11 - T[257-293] 9.03E-10 - T[299-338] 1.23E-10 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[15-36] 1.8E-51 - T[54-75] 1.8E-51 - T[94-115] 1.8E-51 - T[133-154] 1.8E-51 - T[170-191] 1.8E-51 - T[227-248] 1.8E-51 |
| PANTHER |
LRP4 (IPR030799) - T[38-748] 8.0E-281 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[56-78] . - T[229-251] . - T[271-293] . |
| SMART |
EGF-like_dom (IPR000742) - T[159-195] 250.0 - T[216-252] 200.0 - T[345-383] 0.015 - T[387-423] 7.5E-4 - T[696-745] 0.86 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[367-382] . - T[407-422] . |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[384-423] 5.8E-10 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[384-407] . |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[384-422] 1.1E-8 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[384-423] 9.188 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[398-409] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[427-749] 9.7E-124 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[449-491] 4.9E-5 - T[492-534] 7.3E-14 - T[535-578] 2.9E-10 - T[579-621] 7.5E-14 - T[622-667] 5.0E-4 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[469-509] 2.8E-6 - T[512-552] 1.6E-9 - T[556-596] 3.9E-13 - T[599-642] 2.8E-7 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[469-511] 14.263 - T[512-554] 15.725 - T[555-598] 14.635 - T[599-645] 13.567 - T[646-686] 4.958 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 51.124 % | 708 | 0 |
| VLDLR_HUMAN | 39.603 % | 530 | 2.59E-177 |
| LDLR_HUMAN | 39.052 % | 492 | 5.6E-163 |