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- Transcript 'Cisavi.CG.ENS81.R15....' >
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- Transcript 'Cisavi.CG.ENS81.R15....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R15.1264403-1281617.12661.t
Possible name(s)
LRP4; LRP6
Gene model
Location
R15 [1,265,447 / 1,275,656]
Amino acid sequence
Length: 613
>Cisavi.CG.ENS81.R15.1264403-1281617.12661.p
PTCHPKSFQCENGKCINREWNCDGENDCGDDSDELNCPTEACDESTEKTCRSGGCVPKRW
WCDGDDDCSDGSDEVDCSNGTLMDVYGYNPPIPAAEYDECIHGEFRCKSGMCVSDSWRCD
GDNDCNDGSDEQNCAEEPVGCDDDQFECFTSKRCIRMSWRCDGEPDCTDRSDEVECGKRF
AACGFDTCGSGMHRCNNGQCIGRFKVCDGVVDCLDFSDESPSRANYTSCDERNGGCEHTC
RTSLGGRAQCVCAKGFELASDLSSCEDLDECAEEASCSQICNNTIGSFVCSCLAGYSLRP
DGRTCKASGPEAALLFTNRIDIKKILPDRSEFRSVLRDLENAIGLDYHIEKGLMFWTDVT
LDRIMRSYVNGSGVQQVVSSGLESPGGVAVDWIHNLLYWTDSGTSRVEVSHLDGSYRKVL
VWDNLEKPRALALHPLHSLMFWTDWGDSPRLESAAMDGSQRHTVASRNLHWPNGITIDYT
RNQIYWADAKYHIIEKANLDGGNRRAVISRGEMKGLLHPFGVAIFEDKLYWTDWQSKSVN
SANKFTGRGAKTIRSRLHFPMDIQTYHPLRQPKDINRCERSNCSHLCLPRPGGVTCACPT
GFRRVNITHCAEN
Nucleotide sequence
Length: 1,839
>Cisavi.CG.ENS81.R15.1264403-1281617.12661.t
CCGACGTGCCACCCGAAATCGTTTCAGTGCGAGAACGGCAAATGTATAAACCGGGAGTGG
AATTGTGACGGCGAAAACGACTGTGGAGATGATAGCGACGAACTTAACTGTCCAACCGAG
GCGTGCGACGAATCGACGGAGAAGACCTGCAGATCGGGAGGTTGCGTGCCGAAGCGATGG
TGGTGTGATGGGGATGACGATTGCTCGGACGGAAGTGACGAAGTAGATTGTAGTAATGGC
ACGCTTATGGATGTATATGGTTATAATCCTCCCATACCCGCAGCCGAGTACGACGAATGC
ATCCACGGAGAGTTCAGGTGCAAGAGCGGAATGTGTGTCAGCGATTCGTGGAGGTGTGAT
GGGGACAACGATTGCAACGATGGATCAGATGAACAGAACTGCGCTGAGGAACCGGTGGGC
TGTGACGACGATCAGTTTGAATGCTTCACCAGCAAACGTTGCATACGAATGAGCTGGAGG
TGCGACGGCGAACCTGATTGCACGGATCGGAGCGACGAAGTTGAATGCGGTAAGCGCTTT
GCGGCATGCGGCTTTGACACGTGTGGAAGCGGAATGCATCGGTGCAACAACGGGCAATGT
ATTGGGAGATTCAAAGTGTGCGACGGGGTGGTGGATTGCCTCGATTTCTCGGATGAAAGT
CCCAGCAGGGCCAACTATACTTCGTGCGACGAAAGGAACGGGGGCTGCGAGCATACGTGT
CGTACGTCATTGGGGGGTCGGGCGCAGTGCGTGTGCGCCAAAGGGTTCGAACTTGCTTCC
GACCTTTCATCGTGTGAAGATCTCGACGAGTGCGCTGAAGAAGCGTCATGCAGCCAAATC
TGCAACAACACGATCGGGAGTTTCGTTTGTTCCTGTTTGGCCGGGTATTCCCTCCGACCC
GACGGGAGGACTTGCAAAGCGAGCGGTCCGGAGGCTGCGCTCCTCTTCACCAACCGCATC
GACATCAAGAAGATTCTTCCGGATCGATCGGAGTTTCGATCCGTCCTCCGAGACCTCGAG
AACGCCATCGGATTAGATTACCACATCGAAAAGGGACTGATGTTTTGGACTGATGTCACA
TTGGACCGCATTATGAGGTCATACGTGAATGGAAGTGGTGTCCAGCAGGTCGTTTCGTCG
GGACTCGAAAGTCCAGGAGGGGTGGCGGTGGATTGGATTCACAACCTGCTGTATTGGACT
GACTCTGGTACTTCGAGGGTAGAAGTATCGCATTTGGACGGATCATATAGGAAGGTGCTG
GTGTGGGACAATCTAGAGAAGCCCCGGGCGCTCGCGTTGCACCCACTGCACAGTTTGATG
TTCTGGACCGACTGGGGGGACAGTCCCCGATTAGAGAGCGCTGCAATGGACGGCAGCCAA
CGACACACAGTGGCTTCAAGGAACTTGCACTGGCCGAATGGAATAACGATCGACTACACG
CGCAACCAGATATATTGGGCGGATGCCAAGTATCATATCATCGAGAAAGCGAACTTGGAC
GGGGGGAACAGACGAGCTGTAATAAGCAGAGGTGAAATGAAGGGTTTACTTCATCCGTTT
GGTGTCGCTATATTCGAGGACAAGTTGTACTGGACAGACTGGCAGAGCAAGAGTGTGAAT
AGCGCGAACAAATTCACCGGACGAGGAGCGAAGACGATTCGAAGTCGACTTCACTTTCCC
ATGGATATCCAGACTTACCATCCACTCAGACAGCCGAAAGATATAAACAGGTGCGAACGA
AGCAACTGTAGTCACCTCTGTCTCCCACGACCCGGCGGGGTGACTTGTGCATGCCCCACT
GGGTTCCGACGCGTCAACATCACCCACTGCGCCGAGAAT
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[2-38] 5.89E-11 - T[42-77] 5.5E-9 - T[99-134] 7.33E-11 - T[140-176] 7.07E-10 |
| PANTHER |
LRP4 (IPR030799) - T[2-612] 4.4E-250 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[2-38] 14.488 - T[41-78] 13.35 - T[99-135] 14.637 - T[140-177] 13.05 - T[187-230] 11.137 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[2-37] 2.1E-13 - T[41-77] 3.6E-9 - T[99-134] 4.8E-12 - T[141-176] 2.0E-10 - T[187-219] 3.1E-9 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[2-39] 8.9E-13 - T[41-79] 3.3E-12 - T[99-136] 1.1E-13 - T[140-178] 7.9E-11 - T[187-228] 4.5E-11 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[3-37] 2.09949E-10 - T[100-134] 3.81778E-12 - T[141-176] 5.51174E-9 - T[188-219] 5.04022E-8 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[13-34] 7.6E-43 - T[53-74] 7.6E-43 - T[110-131] 7.6E-43 - T[152-173] 7.6E-43 - T[198-219] 7.6E-43 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[15-37] . - T[112-134] . - T[154-176] . |
| SMART |
EGF-like_dom (IPR000742) - T[99-135] 200.0 - T[228-266] 0.015 - T[270-306] 7.5E-4 - T[577-611] 0.12 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[199-305] 7.38E-20 - T[573-610] 7.38E-20 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[250-265] . - T[290-305] . - T[596-610] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[267-290] . |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[267-306] 5.8E-10 - T[574-611] 0.0023 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[267-305] 8.8E-9 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[267-306] 9.188 - T[574-611] 8.01 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[281-292] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[310-613] 8.7E-125 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[332-374] 4.9E-5 - T[375-417] 7.3E-14 - T[418-461] 2.9E-10 - T[462-504] 7.5E-14 - T[505-550] 5.0E-4 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[352-394] 14.263 - T[395-437] 15.725 - T[438-481] 14.635 - T[482-528] 13.567 - T[529-569] 4.958 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[352-392] 2.2E-6 - T[395-435] 1.3E-9 - T[439-479] 3.1E-13 - T[482-525] 2.1E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 49.488 % | 671 | 0 |
| VLDLR_HUMAN | 39.379 % | 441 | 3.88E-145 |
| LDLR_HUMAN | 39.123 % | 445 | 1.31E-146 |