- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R15....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R15.1264403-1281617.12662.t
Possible name(s)
LRP4; LRP6
Gene model
Location
R15 [1,265,462 / 1,271,086]
Amino acid sequence
Length: 325
>Cisavi.CG.ENS81.R15.1264403-1281617.12662.p
KSFQCENGKCINREWNCDGENDCGDDSDELNCREYNLCCNSSGGCVPKRWWCDGDDDCSD
GSDEVDCTNTGLEGAKPVHTAPRTPDTATRRCLQFYSTLCVNARECVSRAFHCDGDFDCR
DGSDEESEEFSCAGEGPLAGHGQLDFCIPLEYVCDQELDCDNGVDEQNCSKFMYRQYRCA
NGQCIGLHGHCDGQDDCGDGSDETNCPEYDECIHGEFRCKSGMCVSDSWRCDGDNDCNDG
SDEQNCAEEPVGCDDDQFECFTSKRCIRMSWRCDGEPDCTDRSDEVECDTCGSGMHRCNN
GQCIGRFKVCDGVVDCLDFSDESPS
Nucleotide sequence
Length: 975
>Cisavi.CG.ENS81.R15.1264403-1281617.12662.t
AAATCGTTTCAGTGCGAGAACGGCAAATGTATAAACCGGGAGTGGAATTGTGACGGCGAA
AACGACTGTGGAGATGATAGCGACGAACTTAACTGTCGTGAGTACAACTTGTGTTGCAAT
TCATCGGGAGGTTGCGTGCCGAAGCGATGGTGGTGTGATGGGGATGACGATTGCTCGGAC
GGAAGTGACGAAGTAGATTGTACAAACACAGGGTTGGAAGGCGCAAAGCCCGTCCACACA
GCCCCCAGGACACCTGATACGGCTACTCGCAGATGTTTGCAATTCTATTCCACTTTGTGC
GTTAATGCCAGAGAATGTGTCAGTCGGGCTTTTCACTGCGATGGAGATTTTGACTGCAGA
GATGGCTCGGACGAGGAGTCTGAGGAGTTTTCCTGCGCCGGAGAAGGTCCGCTGGCTGGA
CATGGTCAGCTGGACTTCTGCATTCCACTCGAATACGTGTGCGACCAAGAGCTCGACTGC
GACAACGGGGTGGACGAACAAAACTGCAGTAAGTTCATGTACCGCCAATACAGATGCGCC
AATGGTCAGTGCATTGGACTCCATGGTCACTGCGATGGACAGGACGATTGCGGGGACGGA
AGTGACGAAACGAATTGTCCCGAGTACGACGAATGCATCCACGGAGAGTTCAGGTGCAAG
AGCGGAATGTGTGTCAGCGATTCGTGGAGGTGTGATGGGGACAACGATTGCAACGATGGA
TCAGATGAACAGAACTGCGCTGAGGAACCGGTGGGCTGTGACGACGATCAGTTTGAATGC
TTCACCAGCAAACGTTGCATACGAATGAGCTGGAGGTGCGACGGCGAACCTGATTGCACG
GATCGGAGCGACGAAGTTGAATGCGACACGTGTGGAAGCGGAATGCATCGGTGCAACAAC
GGGCAATGTATTGGGAGATTCAAAGTGTGCGACGGGGTGGTGGATTGCCTCGATTTCTCG
GATGAAAGTCCCAGC
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[1-33] 12.762 - T[31-68] 13.075 - T[91-126] 9.325 - T[118-170] 11.275 - T[168-207] 13.275 - T[211-247] 14.637 - T[252-289] 13.062 - T[290-325] 10.288 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[2-34] 7.1E-6 - T[38-69] 8.2E-5 - T[91-130] 4.9E-5 - T[131-171] 0.0097 - T[176-208] 5.7E-8 - T[211-248] 1.1E-13 - T[252-289] 1.4E-7 - T[290-325] 1.5E-8 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[2-32] 5.2E-11 - T[31-67] 8.5E-8 - T[102-126] 2.0E-6 - T[143-169] 2.6E-5 - T[176-206] 9.2E-10 - T[211-246] 2.1E-12 - T[253-288] 8.8E-11 - T[290-322] 2.2E-9 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[2-33] 2.09E-9 - T[31-67] 2.62E-8 - T[97-127] 2.23E-6 - T[146-173] 1.17E-5 - T[174-207] 3.53E-10 - T[211-246] 3.4E-11 - T[252-288] 7.46E-10 - T[290-323] 4.32E-10 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[3-32] 1.29444E-6 - T[176-206] 4.52918E-7 - T[212-246] 3.24461E-9 - T[253-288] 2.6243E-6 - T[291-322] 9.1321E-6 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[8-29] 2.6E-53 - T[43-64] 2.6E-53 - T[104-125] 2.6E-53 - T[182-203] 2.6E-53 - T[222-243] 2.6E-53 - T[264-285] 2.6E-53 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[10-32] . - T[45-67] . - T[224-246] . - T[266-291] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 42.9 % | 185 | 2.52E-52 |
| SORL_HUMAN | 36.802 % | 174 | 1.31E-48 |
| VLDLR_HUMAN | 38.348 % | 173 | 1.7E-48 |