- Transcript 'Cisavi.CG.ENS81.R15....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R15.1264403-1281617.12663.t
Possible name(s)
LRP4; LRP6
Gene model
Location
R15 [1,272,588 / 1,281,617]
Amino acid sequence
Length: 1,101
>Cisavi.CG.ENS81.R15.1264403-1281617.12663.p
LDYHIEKGLMFWTDVTLDRIMRSYVNGSGVQQVVSSGLESPGGVAVDWIHNLLYWTDSGT
SRVEVSHLDGSYRKVLVWDNLEKPRALALHPLHSLMFWTDWGDSPRLESAAMDGSQRHTV
ASRNLHWPNGITIDYTRNQIYWADAKYHIIEKANLDGGNRRAVISRGLLHPFGVAIFEDK
LYWTDWQSKSVNSANKFTGRGAKTIRSRLHFPMDIQTYHPLRQPKDINRCERSNCSHLCL
PRPGGVTCACPTGFRRVNITHCAENIDHFLVFTRKTDIRRISFDGLERADTVLPVKNLKN
AVALDWHSQHPGHIYWSDVGRDSISRAEWDGSNEKVIVSSSLDSPAGLAVDWITNKIYWT
EAGINRIEVALLDGSMRCVLIWTGLDRPRAIVVHPATGHMIWTDWGTEPKIERAGMDGTN
RTTLVSSGLTWPNGVAIDYLTDRVYWTDAGAKTIESCDLHGANRQVVVGDDLPHPFGITM
DEDTIYWTDWQSKCISSADKRTGMNRKILRENLEYLMDIRFYHNSRPQSPNPCSVRNGGC
THLCLLSPNLDGVNGGDILSTPYRCACPTGLTLSHDRHKCNTEMNKFLAIARRTDIRVIS
LDVQYSADVKLPIRSFLANVVDVAVDPRDGYLYWSDIGSHEISRTLLIDPAVSEAVVSSG
LDIVEGLVVDPIGRLLYWTDDGRDIISVSSLDGAHQRVLVHNDLGSPRAIALHQGIGYMY
WTDWGNNPSAKIERAGMDGTDRSVIVSSDLIWPNGITIDQELGWLIWDVHYQPHQQRIER
SDLLGGNRTIIHSSSPHPYSISCLDGFVYWTDWETRNVRRMDLHNTSDVRTLRENMPSMM
GMKAVSMEPPGPNICGLNNGGCSHLCLRSPTARMGYTCACPTGIRIGRDGKTCSDLPEEY
LLFTTRLSIRRLSLEADTNTYVELPVGDLENTIALDYHYGRQLLFYTDVYLDVIKRSNLD
GTNSKTIVSRKLQTTDGVAVDWVADNIYWTDAGPKTISVARLDGSSRKVLIDQGLDEPRA
LVVHPSRGLVFWTDWGEKAKIEKMNMDGSGRKVRIAVICSGRTDSSIDYNNSRLFYVDAS
DELNRIETCDFNGRKRRVVVS
Nucleotide sequence
Length: 3,303
>Cisavi.CG.ENS81.R15.1264403-1281617.12663.t
CTAGATTACCACATCGAAAAGGGACTGATGTTTTGGACTGATGTCACATTGGACCGCATT
ATGAGGTCATACGTGAATGGAAGTGGTGTCCAGCAGGTCGTTTCGTCGGGACTCGAAAGT
CCAGGAGGGGTGGCGGTGGATTGGATTCACAACCTGCTGTATTGGACTGACTCTGGTACT
TCGAGGGTAGAAGTATCGCATTTGGACGGATCATATAGGAAGGTGCTGGTGTGGGACAAT
CTAGAGAAGCCCCGGGCGCTCGCGTTGCACCCACTGCACAGTTTGATGTTCTGGACCGAC
TGGGGGGACAGTCCCCGATTAGAGAGCGCTGCAATGGACGGCAGCCAACGACACACAGTG
GCTTCAAGGAACTTGCACTGGCCGAATGGAATAACGATCGACTACACGCGCAACCAGATA
TATTGGGCGGATGCCAAGTATCATATCATCGAGAAAGCGAACTTGGACGGGGGGAACAGA
CGAGCTGTAATAAGCAGAGGTTTACTTCATCCGTTTGGTGTCGCTATATTCGAGGACAAG
TTGTACTGGACAGACTGGCAGAGCAAGAGTGTGAATAGCGCGAACAAATTCACCGGACGA
GGAGCGAAGACGATTCGAAGTCGACTTCACTTTCCCATGGATATCCAGACTTACCATCCA
CTCAGACAGCCGAAAGATATAAACAGGTGCGAACGAAGCAACTGTAGTCACCTCTGTCTC
CCACGACCCGGCGGGGTGACTTGTGCATGCCCCACTGGGTTCCGACGCGTCAACATCACC
CACTGCGCCGAGAATATCGACCATTTCCTCGTTTTTACCCGGAAAACAGACATTAGGAGA
ATTTCGTTCGACGGGTTGGAACGAGCGGATACAGTGTTGCCAGTTAAAAACCTGAAGAAC
GCCGTCGCGCTTGACTGGCACAGCCAACATCCTGGTCACATCTACTGGTCCGACGTGGGG
AGAGATAGTATTAGCAGGGCAGAATGGGACGGAAGTAATGAAAAGGTGATTGTGAGCAGT
AGTTTAGACTCGCCCGCTGGACTTGCCGTGGATTGGATTACCAACAAGATATATTGGACC
GAAGCTGGGATCAATAGAATCGAAGTGGCGCTCTTAGACGGTTCAATGCGGTGTGTGCTG
ATCTGGACGGGTCTGGACCGGCCCAGGGCGATCGTGGTTCACCCAGCAACGGGGCACATG
ATATGGACGGATTGGGGAACCGAACCGAAGATCGAACGAGCGGGGATGGATGGGACGAAT
CGAACGACCTTGGTCTCATCCGGTCTAACTTGGCCAAATGGTGTTGCGATCGATTATCTA
ACCGACAGGGTGTATTGGACAGACGCGGGGGCAAAGACAATCGAGTCGTGTGATCTGCAT
GGCGCGAATAGACAGGTCGTTGTTGGCGACGATCTCCCTCACCCCTTTGGTATCACCATG
GACGAGGACACCATCTACTGGACAGATTGGCAGTCCAAATGCATCTCTAGCGCCGACAAG
CGGACCGGGATGAACCGAAAGATCCTGCGAGAGAACCTGGAGTACCTGATGGACATTCGG
TTCTACCACAACTCCCGACCACAGTCCCCTAACCCATGCTCGGTACGGAATGGGGGATGC
ACCCATCTCTGCTTGCTCTCCCCCAACTTGGACGGGGTAAACGGGGGGGATATTCTGTCG
ACCCCATACCGATGCGCCTGCCCCACCGGACTCACACTCAGCCACGACCGTCACAAGTGC
AACACGGAGATGAACAAGTTCCTGGCGATCGCGCGTCGTACCGACATCCGGGTCATCTCA
CTTGACGTTCAATACTCGGCGGACGTCAAGCTGCCCATCCGTTCCTTCCTTGCTAACGTG
GTGGATGTTGCCGTCGATCCCCGGGACGGTTACTTGTATTGGTCGGACATCGGATCGCAC
GAGATATCCCGAACACTCCTGATTGACCCTGCTGTCAGTGAGGCGGTTGTATCATCTGGA
CTGGACATCGTGGAAGGGTTGGTCGTCGATCCAATCGGACGTTTGCTCTACTGGACAGAC
GACGGGCGCGATATCATTTCCGTGTCGAGTTTGGATGGCGCCCACCAGCGGGTCCTCGTG
CACAATGACCTCGGTTCGCCGCGAGCAATAGCTCTGCACCAGGGAATAGGATACATGTAC
TGGACCGACTGGGGGAATAACCCATCAGCGAAAATCGAACGAGCGGGCATGGATGGCACT
GACCGATCGGTTATCGTATCTAGCGACCTCATCTGGCCGAATGGAATCACCATTGACCAA
GAGCTCGGCTGGTTAATTTGGGACGTACATTATCAACCCCATCAACAGAGAATTGAGCGG
TCAGACTTACTGGGTGGGAATCGAACCATCATCCATTCGTCTTCCCCACATCCATACAGC
ATTAGCTGCCTCGATGGCTTCGTGTATTGGACGGACTGGGAGACGCGTAACGTAAGACGG
ATGGATCTGCACAATACGTCCGACGTACGGACGCTACGAGAGAACATGCCAAGTATGATG
GGCATGAAGGCCGTCTCTATGGAACCACCCGGACCGAATATATGTGGTCTGAACAACGGT
GGATGCAGTCACCTGTGTCTACGAAGCCCGACTGCCCGCATGGGCTACACGTGTGCTTGT
CCGACCGGGATTCGGATCGGACGCGACGGGAAAACTTGCTCCGATCTCCCGGAAGAATAT
CTGCTCTTCACGACCCGTCTCTCCATCCGAAGGTTATCGTTGGAGGCGGATACGAATACT
TACGTCGAGCTGCCTGTTGGCGACCTCGAAAACACAATTGCGTTGGATTACCATTATGGA
CGTCAACTTCTCTTCTACACCGATGTCTACCTGGATGTGATCAAGCGATCGAACTTGGAC
GGAACGAACTCTAAGACCATCGTGTCGCGGAAGTTGCAGACGACGGACGGGGTGGCTGTG
GACTGGGTGGCGGATAACATCTACTGGACGGATGCCGGACCAAAAACCATCTCGGTGGCG
CGCTTGGACGGTTCTAGCAGGAAAGTGCTGATTGATCAAGGATTGGACGAACCGCGGGCG
TTGGTCGTCCATCCGTCACGTGGTCTCGTATTCTGGACTGACTGGGGAGAGAAAGCAAAG
ATTGAAAAGATGAATATGGACGGGAGCGGGAGAAAGGTTCGTATTGCGGTAATCTGCAGT
GGCCGAACGGACTCATCTATCGACTACAATAACTCTCGTCTCTTCTACGTCGACGCGTCC
GATGAACTGAACCGAATCGAAACCTGCGATTTTAACGGACGAAAACGGAGGGTTGTGGTT
TCG
| PANTHER |
LRP4 (IPR030799) - T[1-1101] 0.0 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[1-30] 12.0 - T[31-73] 7.3E-14 - T[74-117] 2.9E-10 - T[118-160] 7.5E-14 - T[161-202] 3.8E-6 - T[291-334] 1.3E-6 - T[335-377] 1.9E-14 - T[378-421] 1.6E-11 - T[422-464] 2.5E-16 - T[465-505] 7.7E-4 - T[610-652] 1.6 - T[654-696] 3.1E-12 - T[697-742] 2.3E-11 - T[743-788] 0.007 - T[789-828] 0.38 - T[922-964] 2.1E-6 - T[965-1007] 2.6E-14 - T[1008-1051] 6.4E-14 - T[1056-1096] 8.7 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[1-266] 3.2E-116 - T[267-526] 6.5E-99 - T[580-891] 1.9E-98 - T[892-1101] 8.9E-70 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[8-48] 4.4E-6 - T[51-91] 2.5E-9 - T[95-135] 6.2E-13 - T[138-177] 2.4E-8 - T[312-352] 8.6E-11 - T[355-395] 3.7E-5 - T[399-439] 3.8E-11 - T[442-481] 8.0E-8 - T[674-713] 3.9E-10 - T[717-759] 2.5E-13 - T[943-982] 1.7E-6 - T[986-1025] 1.8E-12 - T[1028-1052] 3.7E-4 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[8-50] 14.263 - T[51-93] 15.725 - T[94-137] 14.635 - T[138-180] 15.516 - T[181-221] 4.958 - T[312-354] 17.558 - T[355-397] 14.24 - T[398-441] 16.375 - T[442-484] 15.888 - T[485-525] 6.304 - T[630-673] 10.11 - T[674-716] 14.356 - T[717-762] 15.818 - T[806-848] 8.23 - T[942-984] 13.382 - T[985-1027] 16.305 - T[1028-1071] 10.156 - T[1072-1101] 10.086 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[226-263] 0.0023 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[227-262] 3.77E-7 - T[521-581] 3.77E-7 |
| SMART |
EGF-like_dom (IPR000742) - T[229-263] 0.12 - T[532-581] 0.86 - T[854-894] 0.72 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[248-262] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 55.072 % | 1280 | 0 |
| LRP6_HUMAN | 40.072 % | 824 | 0 |
| LRP5_HUMAN | 38.814 % | 767 | 0 |