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  1. Clone 'cien200848' > 
  2. Clone 'cien185404' > 
  3. Clone 'cinc008k07' > 
  4. Transcript 'KH2012:KH.C2.618.v1....' > 
  5. Transcript 'Cisavi.CG.ENS81.R156...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R156.1029810-1050356.16599.t

Possible name(s)

SCN1A; SCN2A; SCN9A

Gene model

Cisavi.CG.ENS81.R156.1029810-1050356

Location

R156 [1,029,848 / 1,050,311]

Sequences

Amino acid sequence

Length: 1,945

>Cisavi.CG.ENS81.R156.1029810-1050356.16599.p
NADLEQGKTLPEYLQGDVPDGYKCRPLVDPDPYYDDKNTYIILDQNYVIYRFSATRSLYF
IGALNIFRRIAARILVHSYPFTHIIIFSRIIIMLTILVNCIFMTMDTTDKDWVNDYVERV
FLGIYSFEMIVKVISRGFITSSFTYMRDPWNLLDISVIFTAYLDIVMAAEATRTGGSAQK
IPGMAALRAFRVLRALKAISAIPGLKAIVSALIESVKALKDVMILTLFCLSVFALIGLQL
FMGSLRQKCIKTWPPSYNNTLLEAWNTQNYSFIFNTTEGELVPYSRFNSSIHNGSLISLP
MPCDPNPAEKCKKQKGWFNESFESWVEDECNFCFVRDSMWLCGNGSGTGHCWEGYTCYRA
GPNPNYNYTSFDNFLWAFLSLFRLMAQDYWENLYMLTLRANGQVYLIFFMLVIFLGSFYL
VNLILAVVAMAYEEQHQIVAAEEERKKAQMQKKKEELENILMEVNKAESRLQSRRASHVT
PGTPTVSSPSSPRSLSSRRSSIRKKHNRWLLGNSIKEKKEKEEAARQAASRLAVEVRTRV
DNPPSVPPNVGMNGDGPPKITATLPSPDLISRAITELQQQQMAEDNTVHHDQDSLIPPHH
PHSILRFETLFQNIIKHYTNNGTVVDRNGVVSLLHRNTFTNNTSLPEVLVERPRHDSECT
SCDGELIHMDTLKPTLQRSRLASIDQLTEPELAIVKRRALSQASIMSAGMDDQRKCGACW
YRFTDVFCIWNCCGCWIKFQKIMRKICDDPFFDLFITICIVANTAFLALEQHPMDPALNN
VLKSANIFFTSIFTAELIIKMVGLQPFYYFQETWNCFDSIIVAASLLEFPLQGLNGLSVL
RSFRLMRVFKLAKSWPTLNMLIKIIGNSMGSLGNLVLILFILLFIFAVVGMQLFREKYNA
GELRWHMKDFGHSFLIVFRILCGEWIETMWGCMHYGKEISALCIPMFMLVQVVGNLVVLN
LFLALLLSSFSADSFSSDEEEAPNAIQLSKIRIQRWIVFGRSTIATWRLSLTKSCRSTIF
LFYRIQVSVLNNEVKTKSTAISGNIFQNDMVTVYIDPPEKENVSITDIRPALCSSTGAGV
QSSDCRYDVAVDLQTDLNSSNMGLVKVPIAAIESDLDNQDSENDSDNSSICTNKSYGSDI
SSCTSSSMSNTEYEQMQKNKEEEGLIADEPSACWPDRCSTRLACCRPPVDQGIYRVWWNA
RKICFRIVEHSWFEFFIILMILLSSGALAFEDVHFRDRKALRQVLKYADRIFTYVFIFEM
LLKWVGYGFKKYFTNAWCWLDFFIVGVSIVGLVAEALKIDNLSSIRSLRTLRAFRPLRAM
SRFEGMKVVVNALIGAIPSIGNVLMVCLIFWMIFSIMGVNLFAGKFFKCLNITDNVKLPA
TNFTYANITYPVINKTICQYLTNNVSPEIRWKNGDVNFDNALAGYLALLQVATFKGWTVI
MYDAVDITDDDKQPIFENSVWFYLYFVGFIVFGSFFTLNLFIGVIIDNFNQQKKKLGGQD
IFMTEEQRKYYNAMKKLGSKKPQKPVPRPKNKLQAWVFDIVTHQMFEITIMLLIVANMIT
MMIESHNMSKTFEAILEYVNYVFVAIFTGEALIKMFALRHHYFKNPWNLFDFNVVILSII
GSTMSELINKYFVQPTLFRIIRLARIGRILRLIKGAKGIRTLLFALMMSLPALVNIGLLL
ILVMFIYSIFGMSQFAYVRRSGGVDDIFNFETFANSFLCLFMITTSAGWDGLLSPMLNSE
YPYCDPDLNNGNPNDTGDCGSPTTAIGFFVTYLIFTFLIVVNMYIAIILENFGVATEEST
DPLGEDDFEMFYEIWERFDPKATQFITYANLSDFVDSLDPPLRVPKPNLHSLNSMDLPMV
IGDRLHCLDVLFALTKRVLGESDELEGLRSSMEEKFMASNPSKVSYEPITTTLKRKQEEI
SAVMIQRWWRRIRLLRTVRIASMLL

Nucleotide sequence

Length: 5,835

>Cisavi.CG.ENS81.R156.1029810-1050356.16599.t
AACGCGGATCTCGAACAAGGAAAAACGCTTCCGGAGTATTTACAGGGTGATGTACCGGAT
GGCTACAAATGTCGACCTTTGGTTGACCCCGACCCATATTATGATGACAAAAATACCTAT
ATTATCCTGGATCAAAACTATGTCATCTACCGGTTCAGCGCAACCAGATCGCTCTACTTT
ATTGGAGCGCTCAATATATTCCGAAGAATCGCAGCGCGAATTTTGGTTCATTCATATCCT
TTTACACATATTATTATATTTTCCCGGATCATAATCATGTTAACGATATTGGTCAACTGT
ATATTCATGACGATGGACACAACTGATAAAGACTGGGTCAACGACTACGTTGAGCGAGTT
TTCTTGGGAATATACTCGTTCGAGATGATTGTAAAGGTTATATCTCGAGGATTTATCACC
TCCAGTTTCACGTACATGCGTGACCCTTGGAACCTACTTGATATAAGCGTTATATTCACT
GCCTACTTGGACATCGTCATGGCTGCTGAGGCAACACGCACAGGCGGCTCGGCGCAAAAG
ATTCCCGGCATGGCCGCACTTCGGGCGTTTCGTGTGCTCCGTGCACTTAAGGCCATATCA
GCCATTCCAGGTTTAAAAGCAATTGTTTCTGCTCTAATCGAGTCGGTAAAAGCGCTAAAA
GACGTCATGATTTTGACTCTTTTTTGTCTCTCTGTTTTCGCTCTCATTGGTTTGCAGCTA
TTTATGGGAAGTCTTCGACAGAAATGTATCAAGACGTGGCCGCCCAGTTACAACAACACC
CTTCTTGAAGCGTGGAACACTCAAAATTACTCTTTTATATTCAACACAACAGAGGGGGAG
TTGGTCCCTTATTCTAGATTTAATTCGTCCATACATAATGGTTCTCTTATATCTCTACCA
ATGCCGTGTGATCCAAACCCAGCAGAGAAGTGTAAAAAACAAAAAGGCTGGTTTAACGAG
AGCTTTGAGTCTTGGGTCGAAGACGAATGTAACTTTTGCTTCGTGCGGGACAGTATGTGG
TTGTGTGGAAATGGCTCTGGAACAGGACACTGTTGGGAAGGCTACACATGCTACCGTGCT
GGCCCTAATCCAAACTACAACTATACAAGCTTTGACAACTTTCTCTGGGCGTTTCTCTCT
CTCTTTAGACTGATGGCGCAGGATTACTGGGAAAATCTATATATGTTGACACTGCGGGCG
AACGGGCAGGTATATCTCATATTCTTCATGCTGGTTATCTTCCTCGGCTCGTTTTATCTT
GTCAACTTAATTCTTGCCGTGGTCGCAATGGCTTATGAAGAACAACACCAGATCGTAGCA
GCGGAGGAAGAACGGAAGAAGGCGCAGATGCAAAAGAAGAAGGAAGAGCTCGAGAACATC
CTCATGGAAGTTAACAAAGCCGAGAGCAGACTGCAAAGTAGACGGGCAAGTCATGTAACT
CCGGGTACTCCGACTGTGTCCTCCCCTTCGTCTCCACGATCTCTCTCTTCCCGTCGCTCT
TCGATCCGGAAGAAGCATAACCGCTGGCTGTTGGGCAACTCCATCAAGGAGAAAAAAGAA
AAAGAAGAGGCTGCCAGACAGGCTGCTTCGAGGCTAGCCGTGGAGGTGAGGACGCGAGTT
GACAATCCTCCGTCAGTTCCGCCTAATGTCGGAATGAACGGAGATGGGCCGCCGAAAATT
ACTGCAACACTCCCAAGTCCCGATTTGATCAGCAGAGCCATTACTGAGCTACAACAACAG
CAAATGGCTGAAGACAACACTGTTCATCATGACCAAGACAGTTTAATCCCACCACACCAT
CCGCACTCGATCTTAAGGTTTGAGACTTTGTTTCAGAATATTATCAAACACTACACGAAC
AACGGGACAGTGGTGGATAGGAACGGGGTGGTATCACTGCTACATAGAAACACTTTTACC
AACAATACGTCACTTCCGGAAGTTCTGGTAGAACGACCTCGACACGACAGCGAATGTACG
TCTTGCGATGGTGAACTAATACATATGGACACATTGAAACCAACCTTACAACGCTCAAGA
CTCGCATCCATCGACCAACTAACCGAACCCGAACTCGCAATAGTAAAACGTCGAGCATTG
AGCCAAGCGTCAATTATGAGTGCAGGTATGGACGATCAGAGAAAATGTGGTGCATGCTGG
TACCGTTTTACTGATGTATTCTGCATATGGAATTGCTGTGGTTGTTGGATTAAATTTCAA
AAGATAATGAGGAAAATTTGCGATGACCCATTTTTTGATCTTTTCATTACAATTTGCATC
GTGGCAAACACGGCGTTTTTAGCTCTTGAGCAACACCCCATGGATCCAGCGTTGAACAAT
GTGCTCAAATCTGCAAACATTTTCTTCACTTCCATTTTTACTGCTGAGCTCATAATAAAG
ATGGTTGGGCTGCAGCCGTTCTATTACTTCCAGGAGACTTGGAACTGCTTCGACTCAATT
ATTGTTGCTGCCTCATTACTTGAGTTTCCGCTGCAAGGATTAAATGGCCTGTCGGTTTTG
AGGTCATTTCGGCTGATGCGAGTCTTCAAACTTGCTAAGTCATGGCCAACTCTCAATATG
CTGATCAAGATTATTGGAAATTCAATGGGATCTTTGGGAAACCTTGTGCTCATATTGTTC
ATCTTGCTGTTCATATTTGCTGTTGTGGGGATGCAGCTGTTCAGGGAGAAATACAATGCA
GGCGAACTCCGGTGGCACATGAAAGACTTTGGTCATTCCTTTCTCATAGTTTTCCGCATT
CTATGTGGGGAATGGATTGAAACAATGTGGGGCTGCATGCACTATGGCAAAGAAATATCT
GCGCTATGTATCCCAATGTTTATGTTGGTACAAGTGGTCGGAAATCTTGTCGTTTTGAAT
TTATTTCTTGCGTTGCTGTTGAGCTCATTCAGTGCTGATTCTTTCTCTTCGGATGAAGAA
GAAGCCCCAAACGCAATCCAACTTTCCAAGATTCGCATCCAGCGGTGGATAGTGTTTGGA
CGAAGTACCATCGCAACTTGGAGGCTTTCCCTTACAAAGTCATGCAGGTCTACAATCTTT
TTATTTTATCGGATCCAAGTTAGTGTTTTAAACAACGAAGTTAAGACCAAGTCGACTGCA
ATTTCCGGCAACATCTTTCAAAATGATATGGTCACTGTGTACATTGATCCACCTGAAAAG
GAAAATGTTTCCATAACAGACATCAGACCCGCTTTGTGCTCGTCCACCGGTGCAGGTGTT
CAGTCGTCAGATTGTAGATATGACGTGGCTGTTGATCTGCAGACTGATTTAAATTCTTCA
AACATGGGCCTTGTGAAAGTTCCAATCGCTGCAATTGAATCAGACCTGGACAATCAAGAT
TCAGAAAATGATTCAGACAATTCCAGTATTTGCACAAATAAATCGTATGGCAGCGACATA
AGTTCATGTACATCATCTAGTATGAGCAACACTGAGTATGAACAGATGCAGAAAAATAAG
GAAGAGGAAGGCTTGATTGCGGATGAGCCATCAGCATGTTGGCCTGACAGATGCAGCACA
AGACTCGCTTGTTGTCGGCCCCCTGTCGATCAAGGAATCTACCGTGTTTGGTGGAATGCC
AGAAAAATATGTTTTCGTATTGTCGAGCACTCCTGGTTCGAATTTTTCATTATTCTGATG
ATTCTACTAAGCAGTGGAGCCTTGGCATTTGAAGATGTACATTTCCGTGACCGCAAGGCT
CTCCGACAAGTGTTAAAATATGCTGATCGAATATTCACTTACGTCTTCATATTTGAAATG
CTGCTTAAATGGGTAGGATACGGCTTTAAGAAGTATTTCACCAACGCATGGTGCTGGCTT
GACTTCTTTATTGTTGGAGTTTCGATTGTCGGTCTTGTGGCTGAGGCTTTAAAAATTGAT
AATTTATCAAGTATCCGCTCGCTTAGAACTCTCCGTGCATTTCGGCCTCTTCGTGCAATG
TCCAGGTTCGAAGGAATGAAGGTTGTGGTGAATGCTTTGATTGGAGCCATTCCATCGATT
GGAAATGTTCTGATGGTTTGTCTCATATTCTGGATGATATTCTCCATAATGGGAGTCAAT
TTGTTTGCGGGAAAGTTCTTTAAGTGCTTAAATATAACAGACAATGTGAAATTGCCAGCA
ACCAACTTTACATATGCCAACATTACTTATCCTGTGATTAACAAGACAATATGTCAATAT
CTCACTAATAATGTGTCTCCGGAAATTCGATGGAAAAATGGTGATGTAAACTTTGACAAC
GCGCTGGCAGGTTATCTGGCATTATTGCAGGTGGCAACATTTAAGGGCTGGACAGTAATT
ATGTATGATGCTGTTGATATTACTGATGATGATAAGCAGCCAATATTTGAAAACAGTGTT
TGGTTCTATCTTTATTTTGTTGGCTTTATTGTGTTTGGTAGCTTCTTCACCTTGAATCTA
TTCATTGGTGTTATCATTGACAACTTTAACCAGCAGAAGAAAAAGCTGGGTGGGCAAGAC
ATTTTTATGACAGAAGAACAAAGAAAGTATTACAATGCTATGAAGAAACTGGGATCTAAA
AAGCCACAGAAACCAGTCCCCCGGCCAAAGAACAAACTTCAAGCATGGGTTTTTGACATT
GTGACTCACCAAATGTTTGAGATTACCATTATGCTTTTGATCGTTGCTAACATGATCACT
ATGATGATAGAATCCCACAACATGTCTAAAACATTCGAAGCAATACTAGAATATGTCAAC
TATGTGTTTGTTGCCATTTTTACAGGAGAAGCATTGATCAAAATGTTTGCTTTGCGGCAC
CACTACTTCAAGAATCCATGGAATTTATTCGATTTTAATGTTGTAATACTTTCTATCATT
GGAAGCACAATGAGCGAACTAATTAATAAATACTTTGTTCAGCCAACCCTGTTCCGTATT
ATCCGTCTTGCTCGGATTGGACGGATTCTGCGGTTAATCAAAGGAGCAAAAGGGATCCGG
ACTTTGCTCTTTGCTCTTATGATGTCACTTCCTGCTCTTGTCAACATTGGGCTACTGCTT
ATACTGGTTATGTTCATTTATTCTATCTTCGGCATGTCCCAATTCGCATATGTGCGTAGA
AGTGGCGGTGTTGATGATATCTTCAATTTTGAAACATTTGCAAACTCTTTCCTTTGTCTG
TTTATGATTACCACATCAGCAGGTTGGGATGGACTTTTGAGCCCCATGCTCAACTCGGAA
TACCCATACTGTGATCCTGATCTAAACAATGGAAATCCCAATGATACGGGTGATTGTGGG
AGCCCCACTACAGCCATCGGTTTCTTTGTCACTTATCTCATATTCACGTTTTTAATTGTT
GTAAACATGTACATCGCAATTATCCTGGAAAACTTTGGTGTTGCCACGGAGGAGAGTACA
GATCCACTCGGCGAAGATGATTTTGAGATGTTCTATGAGATATGGGAGCGATTTGATCCG
AAAGCAACACAATTTATAACCTATGCGAACCTGTCGGATTTTGTTGATAGTCTGGATCCT
CCACTCCGAGTACCAAAGCCTAACCTGCACAGTCTGAACAGCATGGACCTGCCCATGGTG
ATTGGTGATCGACTGCATTGCCTCGATGTACTCTTTGCGCTCACCAAACGGGTCCTGGGA
GAGTCAGATGAGCTGGAAGGTCTTCGATCTTCCATGGAGGAGAAGTTTATGGCTTCGAAT
CCATCAAAAGTTTCCTATGAGCCGATCACAACAACTCTGAAAAGAAAGCAGGAGGAGATA
TCTGCCGTGATGATCCAGCGGTGGTGGAGAAGAATTCGTCTCCTCCGTACTGTACGTATT
GCATCCATGCTGCTC

InterProScan

Gene3D
Volt_channel_dom_sf (IPR027359) - T[81-203] 2.0E-19 - T[739-854] 3.1E-32 - T[1202-1324] 4.0E-30 - T[1534-1656] 1.2E-40
Pfam
Ion_trans_dom (IPR005821) - T[90-437] 2.4E-76 - T[750-971] 7.4E-51 - T[1210-1495] 7.1E-63 - T[1543-1798] 8.7E-52
Pfam
Na_trans_assoc (IPR010526) - T[985-1206] 1.1E-18
PRINTS
Na_channel_asu (IPR001696) - T[1771-1790] 5.7E-12 - T[1806-1819] 5.7E-12
Pfam
GPHH_dom (IPR031649) - T[1803-1842] 1.4E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SCN1A_HUMAN 51.031 % 1797 0
SCN2A_HUMAN 50.898 % 1794 0
SCN9A_HUMAN 51.227 % 1793 0