- Transcript 'Haaura.CG.MTP2014.S4...' >
- Clone 'ciad053k23' >
- Transcript 'KH2012:KH.C10.464.v1...' >
- Clone 'AHC0AAA187YC05' >
- Transcript 'Cisavi.CG.ENS81.R156...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R156.1029810-1050356.16600.t
Possible name(s)
SCN1A; SCN2A; SCN9A
Gene model
Location
R156 [1,029,851 / 1,050,353]
Amino acid sequence
Length: 1,870
>Cisavi.CG.ENS81.R156.1029810-1050356.16600.p
QEGEAEEYSKDAKANADLEQGKTLPEYLQGDVPDGYKCRPLVDPDPYYDDKNTYIILDQN
YVIYRFSATRSLYFIGALNIFRRIAARILVHSYPFTHIIIFSRIIIMLTILVNCIFMTMD
TTDKDWVNDYVERVFLGIYSFEMIVKVISRGFITSSFTYMRDPWNLLDISVIFTAYLSEI
LIAFHVGIDKLTVLRAFRVIRALKTISAHAGLKAIVSALIESVKALKDVMILTLFCLSVF
ALIGLQLFMGSLRQKCIKTWPPRLVDFLYNQYNPNINVRLFCFCFESWVEDECNFCFVRD
SMWLCGNGSGTGHCWEGYTCYRAGPNPNYNYTSFDNFLWAFLSLFRLMAQDYWENLYMLT
LRANGQVYLIFFMLVIFLGSFYLVNLILAVVAMAYEEQHQVRLSEEERKKAQMQKKKEEL
ENILMEVNKAESRLQSRRASHVTPGTPTVSSPSSPRSLSSRRSSIRKKHNRWLLGNSIKE
KKEKEEAARQAASRLAVEVRTRSSQKSNEGRRRFKKKLIDVPPMNLLLGWASSLTVNRLI
ESYFLPECYDSDFADDESSDRLSVDDVSAKLAPSRHASTNGHTNTRSNSTNNGTVVDRNG
VVSLLHRNTFTNNTSLPEVLCTSCDGELIHMDTLKPTLQRSRLASIDQLTEPELAIVKRR
ALSQASIMSAGMDDQRKCGACWYRFTDVFCIWNCCGCWIKFQKIMRKICDDPFFDLFITI
CIVANTAFLALEQHPMDPALNNVLKSANIFFTSIFTAELIIKMVGLQPFYYFQETWNCFD
SIIVAASLLEFPLQGLNGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSMGSLGNLVLI
LFILLFIFAVVGMQLFREKYNAGELRWHMKDFGHSFLIVFRILCGEWIETMWGCMHYGKE
ISALCIPMFMLVQVVGNLVVLNLFLALLLSSFSADSFSSDEEEAPNAIQLSKIRIQRWIV
FGRIKTKSTAISGNIFQNDMVTVYIDPPEKENVSITDIRPALCSSTGAGVQSSDCRYDVA
VDLQTDLNSSNMGLVKVPIAAIESDLDNQDSENDSDNSSICTNKSYGSDISSCTSSSMSN
TEYEQMQKNKEEEVVEEACWPDRCSTRLACCRPPVDQGIYRVWWNARKICFRIVEHSWFE
FFIILMILLSSGALAFEDVHFRDRKALRQVLKYADRIFTYVFIFEMLLKWVGYGFKKYFT
NAWCWLDFFIVGVSIVGLVAEALKIDNLSSIRSLRTLRAFRPLRAMSRFEGMKVVVNALI
GAIPSIGNVLMVCLIFWMIFSIMGVNLFAGKFFKCLNITDNVKLPATNFTYANITYPVIN
KTICQYLTNNVSPEIRWKNGDVNFDNALAGYLALLQVATFKGWTVIMYDAVDITDDDKQP
IFENSVWFYLYFVGFIVFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQRKYYNAM
KKLGSKKPQKPVPRPKNKLQAWVFDIVTHQMFEITIMLLIVANMITMMIESHNMSKTFEA
ILEYVNYVFVAIFTGEALIKMFALRHHYFKNPWNLFDFNVVILSIIGSTMSELINKYFVQ
PTLFRIIRLARIGRILRLIKGAKGIRTLLFALMMSLPALVNIGLLLILVMFIYSIFGMSQ
FAYVRRSGGVDDIFNFETFANSFLCLFMITTSAGWDGLLSPMLNSEYPYCDPDLNNGNPN
DTGDCGSPTTAIGFFVTYLIFTFLIVVNMYIAIILENFGVATEESTDPLGEDDFEMFYEI
WERFDPKATQFITYANLSDFVDSLDPPLRVPKPNLHSLNSMDLPMVIGDRLHCLDVLFAL
TKRVLGESDELEGLRSSMEEKFMASNPSKVSYEPITTTLKRKQEEISAVMIQRWWRRIRL
LRTVRIASML
Nucleotide sequence
Length: 5,610
>Cisavi.CG.ENS81.R156.1029810-1050356.16600.t
CAGGAAGGCGAGGCTGAGGAATATTCAAAAGACGCCAAGGCGAACGCGGATCTCGAACAA
GGAAAAACGCTTCCGGAGTATTTACAGGGTGATGTACCGGATGGCTACAAATGTCGACCT
TTGGTTGACCCCGACCCATATTATGATGACAAAAATACCTATATTATCCTGGATCAAAAC
TATGTCATCTACCGGTTCAGCGCAACCAGATCGCTCTACTTTATTGGAGCGCTCAATATA
TTCCGAAGAATCGCAGCGCGAATTTTGGTTCATTCATATCCTTTTACACATATTATTATA
TTTTCCCGGATCATAATCATGTTAACGATATTGGTCAACTGTATATTCATGACGATGGAC
ACAACTGATAAAGACTGGGTCAACGACTACGTTGAGCGAGTTTTCTTGGGAATATACTCG
TTCGAGATGATTGTAAAGGTTATATCTCGAGGATTTATCACCTCCAGTTTCACGTACATG
CGTGACCCTTGGAACCTACTTGATATAAGCGTTATATTCACTGCATATTTATCAGAGATA
TTGATTGCCTTCCATGTGGGAATCGATAAGTTAACTGTACTCCGTGCTTTCCGAGTTATT
AGGGCGCTAAAAACCATCTCCGCACATGCAGGTTTAAAAGCAATTGTTTCTGCTCTAATC
GAGTCGGTAAAAGCGCTAAAAGACGTCATGATTTTGACTCTTTTTTGTCTCTCTGTTTTC
GCTCTCATTGGTTTGCAGCTATTTATGGGAAGTCTTCGACAGAAATGTATCAAGACGTGG
CCGCCCAGGTTAGTTGACTTTCTTTACAATCAATACAATCCTAATATAAACGTGCGACTC
TTCTGTTTTTGCTTTGAGTCTTGGGTCGAAGACGAATGTAACTTTTGCTTCGTGCGGGAC
AGTATGTGGTTGTGTGGAAATGGCTCTGGAACAGGACACTGTTGGGAAGGCTACACATGC
TACCGTGCTGGCCCTAATCCAAACTACAACTATACAAGCTTTGACAACTTTCTCTGGGCG
TTTCTCTCTCTCTTTAGACTGATGGCGCAGGATTACTGGGAAAATCTATATATGTTGACA
CTGCGGGCGAACGGGCAGGTATATCTCATATTCTTCATGCTGGTTATCTTCCTCGGCTCG
TTTTATCTTGTCAACTTAATTCTTGCCGTGGTCGCAATGGCTTATGAAGAACAACACCAG
GTGAGATTGTCGGAGGAAGAACGGAAGAAGGCGCAGATGCAAAAGAAGAAGGAAGAGCTC
GAGAACATCCTCATGGAAGTTAACAAAGCCGAGAGCAGACTGCAAAGTAGACGGGCAAGT
CATGTAACTCCGGGTACTCCGACTGTGTCCTCCCCTTCGTCTCCACGATCTCTCTCTTCC
CGTCGCTCTTCGATCCGGAAGAAGCATAACCGCTGGCTGTTGGGCAACTCCATCAAGGAG
AAAAAAGAAAAAGAAGAGGCTGCCAGACAGGCTGCTTCGAGGCTAGCCGTGGAGGTGAGG
ACGCGATCGTCACAAAAATCAAACGAAGGTAGACGGAGATTCAAAAAAAAACTAATTGAT
GTTCCCCCAATGAACTTGCTGCTCGGGTGGGCAAGTTCGTTGACAGTAAATCGTTTAATT
GAATCTTATTTTTTACCAGAATGTTACGACTCGGATTTTGCCGACGACGAAAGCTCAGAC
CGATTGAGCGTTGATGACGTCAGCGCCAAACTTGCCCCGTCACGACACGCAAGCACAAAC
GGACATACAAACACTCGCTCCAACAGCACGAACAACGGGACAGTGGTGGATAGGAACGGG
GTGGTATCACTGCTACATAGAAACACTTTTACCAACAATACGTCACTTCCGGAAGTTCTG
TGTACGTCTTGCGATGGTGAACTAATACATATGGACACATTGAAACCAACCTTACAACGC
TCAAGACTCGCATCCATCGACCAACTAACCGAACCCGAACTCGCAATAGTAAAACGTCGA
GCATTGAGCCAAGCGTCAATTATGAGTGCAGGTATGGACGATCAGAGAAAATGTGGTGCA
TGCTGGTACCGTTTTACTGATGTATTCTGCATATGGAATTGCTGTGGTTGTTGGATTAAA
TTTCAAAAGATAATGAGGAAAATTTGCGATGACCCATTTTTTGATCTTTTCATTACAATT
TGCATCGTGGCAAACACGGCGTTTTTAGCTCTTGAGCAACACCCCATGGATCCAGCGTTG
AACAATGTGCTCAAATCTGCAAACATTTTCTTCACTTCCATTTTTACTGCTGAGCTCATA
ATAAAGATGGTTGGGCTGCAGCCGTTCTATTACTTCCAGGAGACTTGGAACTGCTTCGAC
TCAATTATTGTTGCTGCCTCATTACTTGAGTTTCCGCTGCAAGGATTAAATGGCCTGTCG
GTTTTGAGGTCATTTCGGCTGATGCGAGTCTTCAAACTTGCTAAGTCATGGCCAACTCTC
AATATGCTGATCAAGATTATTGGAAATTCAATGGGATCTTTGGGAAACCTTGTGCTCATA
TTGTTCATCTTGCTGTTCATATTTGCTGTTGTGGGGATGCAGCTGTTCAGGGAGAAATAC
AATGCAGGCGAACTCCGGTGGCACATGAAAGACTTTGGTCATTCCTTTCTCATAGTTTTC
CGCATTCTATGTGGGGAATGGATTGAAACAATGTGGGGCTGCATGCACTATGGCAAAGAA
ATATCTGCGCTATGTATCCCAATGTTTATGTTGGTACAAGTGGTCGGAAATCTTGTCGTT
TTGAATTTATTTCTTGCGTTGCTGTTGAGCTCATTCAGTGCTGATTCTTTCTCTTCGGAT
GAAGAAGAAGCCCCAAACGCAATCCAACTTTCCAAGATTCGCATCCAGCGGTGGATAGTG
TTTGGACGAATTAAGACCAAGTCGACTGCAATTTCCGGCAACATCTTTCAAAATGATATG
GTCACTGTGTACATTGATCCACCTGAAAAGGAAAATGTTTCCATAACAGACATCAGACCC
GCTTTGTGCTCGTCCACCGGTGCAGGTGTTCAGTCGTCAGATTGTAGATATGACGTGGCT
GTTGATCTGCAGACTGATTTAAATTCTTCAAACATGGGCCTTGTGAAAGTTCCAATCGCT
GCAATTGAATCAGACCTGGACAATCAAGATTCAGAAAATGATTCAGACAATTCCAGTATT
TGCACAAATAAATCGTATGGCAGCGACATAAGTTCATGTACATCATCTAGTATGAGCAAC
ACTGAGTATGAACAGATGCAGAAAAATAAGGAAGAGGAAGTGGTTGAAGAAGCATGTTGG
CCTGACAGATGCAGCACAAGACTCGCTTGTTGTCGGCCCCCTGTCGATCAAGGAATCTAC
CGTGTTTGGTGGAATGCCAGAAAAATATGTTTTCGTATTGTCGAGCACTCCTGGTTCGAA
TTTTTCATTATTCTGATGATTCTACTAAGCAGTGGAGCCTTGGCATTTGAAGATGTACAT
TTCCGTGACCGCAAGGCTCTCCGACAAGTGTTAAAATATGCTGATCGAATATTCACTTAC
GTCTTCATATTTGAAATGCTGCTTAAATGGGTAGGATACGGCTTTAAGAAGTATTTCACC
AACGCATGGTGCTGGCTTGACTTCTTTATTGTTGGAGTTTCGATTGTCGGTCTTGTGGCT
GAGGCTTTAAAAATTGATAATTTATCAAGTATCCGCTCGCTTAGAACTCTCCGTGCATTT
CGGCCTCTTCGTGCAATGTCCAGGTTCGAAGGAATGAAGGTTGTGGTGAATGCTTTGATT
GGAGCCATTCCATCGATTGGAAATGTTCTGATGGTTTGTCTCATATTCTGGATGATATTC
TCCATAATGGGAGTCAATTTGTTTGCGGGAAAGTTCTTTAAGTGCTTAAATATAACAGAC
AATGTGAAATTGCCAGCAACCAACTTTACATATGCCAACATTACTTATCCTGTGATTAAC
AAGACAATATGTCAATATCTCACTAATAATGTGTCTCCGGAAATTCGATGGAAAAATGGT
GATGTAAACTTTGACAACGCGCTGGCAGGTTATCTGGCATTATTGCAGGTGGCAACATTT
AAGGGCTGGACAGTAATTATGTATGATGCTGTTGATATTACTGATGATGATAAGCAGCCA
ATATTTGAAAACAGTGTTTGGTTCTATCTTTATTTTGTTGGCTTTATTGTGTTTGGTAGC
TTCTTCACCTTGAATCTATTCATTGGTGTTATCATTGACAACTTTAACCAGCAGAAGAAA
AAGCTGGGTGGGCAAGACATTTTTATGACAGAAGAACAAAGAAAGTATTACAATGCTATG
AAGAAACTGGGATCTAAAAAGCCACAGAAACCAGTCCCCCGGCCAAAGAACAAACTTCAA
GCATGGGTTTTTGACATTGTGACTCACCAAATGTTTGAGATTACCATTATGCTTTTGATC
GTTGCTAACATGATCACTATGATGATAGAATCCCACAACATGTCTAAAACATTCGAAGCA
ATACTAGAATATGTCAACTATGTGTTTGTTGCCATTTTTACAGGAGAAGCATTGATCAAA
ATGTTTGCTTTGCGGCACCACTACTTCAAGAATCCATGGAATTTATTCGATTTTAATGTT
GTAATACTTTCTATCATTGGAAGCACAATGAGCGAACTAATTAATAAATACTTTGTTCAG
CCAACCCTGTTCCGTATTATCCGTCTTGCTCGGATTGGACGGATTCTGCGGTTAATCAAA
GGAGCAAAAGGGATCCGGACTTTGCTCTTTGCTCTTATGATGTCACTTCCTGCTCTTGTC
AACATTGGGCTACTGCTTATACTGGTTATGTTCATTTATTCTATCTTCGGCATGTCCCAA
TTCGCATATGTGCGTAGAAGTGGCGGTGTTGATGATATCTTCAATTTTGAAACATTTGCA
AACTCTTTCCTTTGTCTGTTTATGATTACCACATCAGCAGGTTGGGATGGACTTTTGAGC
CCCATGCTCAACTCGGAATACCCATACTGTGATCCTGATCTAAACAATGGAAATCCCAAT
GATACGGGTGATTGTGGGAGCCCCACTACAGCCATCGGTTTCTTTGTCACTTATCTCATA
TTCACGTTTTTAATTGTTGTAAACATGTACATCGCAATTATCCTGGAAAACTTTGGTGTT
GCCACGGAGGAGAGTACAGATCCACTCGGCGAAGATGATTTTGAGATGTTCTATGAGATA
TGGGAGCGATTTGATCCGAAAGCAACACAATTTATAACCTATGCGAACCTGTCGGATTTT
GTTGATAGTCTGGATCCTCCACTCCGAGTACCAAAGCCTAACCTGCACAGTCTGAACAGC
ATGGACCTGCCCATGGTGATTGGTGATCGACTGCATTGCCTCGATGTACTCTTTGCGCTC
ACCAAACGGGTCCTGGGAGAGTCAGATGAGCTGGAAGGTCTTCGATCTTCCATGGAGGAG
AAGTTTATGGCTTCGAATCCATCAAAAGTTTCCTATGAGCCGATCACAACAACTCTGAAA
AGAAAGCAGGAGGAGATATCTGCCGTGATGATCCAGCGGTGGTGGAGAAGAATTCGTCTC
CTCCGTACTGTACGTATTGCATCCATGCTG
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[95-208] 1.4E-17 - T[701-816] 3.0E-32 - T[1128-1250] 3.8E-30 - T[1460-1582] 1.1E-40 |
| Pfam |
Ion_trans_dom (IPR005821) - T[104-400] 2.0E-70 - T[712-933] 7.0E-51 - T[1136-1421] 6.7E-63 - T[1469-1724] 8.3E-52 |
| Pfam |
Na_trans_assoc (IPR010526) - T[1020-1132] 4.4E-16 |
| PRINTS |
Na_channel_asu (IPR001696) - T[1697-1716] 5.3E-12 - T[1732-1745] 5.3E-12 |
| Pfam |
GPHH_dom (IPR031649) - T[1729-1768] 1.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SCN1A_HUMAN | 52.361 % | 1812 | 0 |
| SCN2A_HUMAN | 52.401 % | 1833 | 0 |
| SCN9A_HUMAN | 52.167 % | 1808 | 0 |