- Transcript 'KH2012:KH.C3.465.v1....' >
- Transcript 'Boleac.CG.SB_v3.S1.g...' >
- Transcript 'Cisavi.CG.ENS81.R156...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R156.1029810-1050356.16601.t
Possible name(s)
SCN1A; SCN2A; SCN9A
Gene model
Location
R156 [1,029,854 / 1,050,317]
Amino acid sequence
Length: 1,900
>Cisavi.CG.ENS81.R156.1029810-1050356.16601.p
KANADLEQGKTLPEYLQGDVPDGYKCRPLVDPDPYYDDKNTYIILDQNYVIYRFSATRSL
YFIGALNIFRRIAARILVHSYPFTHIIIFSRIIIMLTILVNCIFMTMDTTDKDWVNDYVE
RVFLGIYSFEMIVKVISRGFITSSFTYMRDPWNLLDISVIFTAYLSEILIAFHVGIDKLT
VLRAFRVIRALKTISAHAGLKAIVSALIESVKALKDVMILTLFCLSVFALIGLQLFMGSL
RQKCIKTWPPRLVDFLYNQYNPNINTLYLNLYILLHILVFYTEWFSYISTNAVFESWVED
ECNMWLCGNGSGTGHCWEGYTCYRAGPNPNYNYTSFDNFLWAFLSLFRLMAQDYWENLYM
LTLRANGQVYLIFFMLVIFLGSFYLVNLILAVVAMAYEEQHQVRLSEEERKKAQMQKKKE
ELENILMEVNKAESRLQSRRVRRNHVTPGTPTVSSPSSPRSLSSRRSSIRKKHNRWLLGN
SIKEKKEKEEAARQAASRLAVEVRTRVDNPPSGSTPRASIRNLRLSPSVMKKDSLTVNRL
IESYFLPECYDSDFADDESSDRLSVDDVSAKLAPSRHASTNGHTNSWEIGFQQTNAHHPL
FILCPARSNSTNNGTVVDRNGVVSLLHRNTFTNNTSLPEVLVERPRHDSECTSCDGELIH
MDTLKPTLQRSRLASIDQLTEPELAIVKRMDDQRKCGACWYRFTDVFCIWNCCGCWIKFQ
KIMRKICDDPFFDLFITICIVANTAFLALEQHPMDPALNNVLKSANIFFTSIFTAELIIK
MVGLQPFYYFQETWNCFDSIIVAASLLEFPLQGLNGLSVLRSFRLMRVFKLAKSWPTLNM
LIKIIGNSMGSLGNLVLILFILLFIFAVVGMQLFREKYNAVEGELRWHMKDFGHSFLIVF
RILCGEWIETMWGCMHYGKEISALCIPMFMLVQVVGNLVVLNLFLALLLSSFSADSFSSD
EEEAPNAIQLSKIRIQRWIVFGRRNLRQPSSVLNNEVKTKSTAISGNIFQNDMVTVYIDP
PEKENVSITDIRPALCSSTGAGVQSSDCRYDVAVDLQTDLNSSNMGLVKVPIAAIESDLD
NQDSENDSDNSSICTNKSYGSDISSCTSSSMSNTEYEQMQKNKEEEPSACWPDRCSTRLA
CCRPPVDQGIYRVWWNARKICFRIVEHSWFEFFIILMILLSSGALAFEDVHFRDRKALRQ
VLKYADRIFTYVFIFEMLLKWVGYGFKKYFTNAWCWLDFFIVGVSIVGLVAEALKIDNLS
SIRSLRTLRAFRPLRAMSRFEGMKVVVNALIGAIPSIGNVLMVCLIFWMIFSIMGVNLFA
GKFFKCLNITDNVKLPATNFTYANITYPVINKTICQYLTNNVSPEIRWKNGDVNFDNALA
GYLALLQVATFKGWTVIMYDAVDITDDDKQPIFENSVWFYLYFVGFIVFGSFFTLNLFIG
VIIDNFNQQKKKLGGQDIFMTEEQRKYYNAMKKLGSKKPQKPVPRPKNKLQAWVFDIVTH
QMFEITIMLLIVANMITMMIESHNMSKTFEAILEYVNYVFVAIFTGEALIKMFALRHHYF
KNPWNLFDFNVVILSIIGSTMSELINKYFVQPTLFRIIRLARIGRILRLIKGAKGIRTLL
FALMMSLPALVNIGLLLILVMFIYSIFGMSQFAYVRRSGGVDDIFNFETFANSFLCLFMI
TTSAGWDGLLSPMLNSEYPYCDPDLNNGNPNDTGDCGSPTTAIGFFVTYLIFTFLIVVNM
YIAIILENFGVATEESTDPLGEDDFEMFYEIWERFDPKATQFITYANLSDFVDSLDPPLR
VPKPNLHSLNSMDLPMVIGDRLHCLDVLFALTKRVLGESDELEGLRSSMEEKFMASNPSK
VSYEPITTTLKRKQEEISAVMIQRWWRRIRLLRTVRIASM
Nucleotide sequence
Length: 5,700
>Cisavi.CG.ENS81.R156.1029810-1050356.16601.t
AAGGCGAACGCGGATCTCGAACAAGGAAAAACGCTTCCGGAGTATTTACAGGGTGATGTA
CCGGATGGCTACAAATGTCGACCTTTGGTTGACCCCGACCCATATTATGATGACAAAAAT
ACCTATATTATCCTGGATCAAAACTATGTCATCTACCGGTTCAGCGCAACCAGATCGCTC
TACTTTATTGGAGCGCTCAATATATTCCGAAGAATCGCAGCGCGAATTTTGGTTCATTCA
TATCCTTTTACACATATTATTATATTTTCCCGGATCATAATCATGTTAACGATATTGGTC
AACTGTATATTCATGACGATGGACACAACTGATAAAGACTGGGTCAACGACTACGTTGAG
CGAGTTTTCTTGGGAATATACTCGTTCGAGATGATTGTAAAGGTTATATCTCGAGGATTT
ATCACCTCCAGTTTCACGTACATGCGTGACCCTTGGAACCTACTTGATATAAGCGTTATA
TTCACTGCATATTTATCAGAGATATTGATTGCCTTCCATGTGGGAATCGATAAGTTAACT
GTACTCCGTGCTTTCCGAGTTATTAGGGCGCTAAAAACCATCTCCGCACATGCAGGTTTA
AAAGCAATTGTTTCTGCTCTAATCGAGTCGGTAAAAGCGCTAAAAGACGTCATGATTTTG
ACTCTTTTTTGTCTCTCTGTTTTCGCTCTCATTGGTTTGCAGCTATTTATGGGAAGTCTT
CGACAGAAATGTATCAAGACGTGGCCGCCCAGGTTAGTTGACTTTCTTTACAATCAATAC
AATCCTAATATAAACACTTTATATTTAAACCTATATATCCTGTTACATATTTTGGTGTTC
TATACAGAATGGTTCTCTTATATCTCTACCAATGCCGTCTTTGAGTCTTGGGTCGAAGAC
GAATGTAATATGTGGTTGTGTGGAAATGGCTCTGGAACAGGACACTGTTGGGAAGGCTAC
ACATGCTACCGTGCTGGCCCTAATCCAAACTACAACTATACAAGCTTTGACAACTTTCTC
TGGGCGTTTCTCTCTCTCTTTAGACTGATGGCGCAGGATTACTGGGAAAATCTATATATG
TTGACACTGCGGGCGAACGGGCAGGTATATCTCATATTCTTCATGCTGGTTATCTTCCTC
GGCTCGTTTTATCTTGTCAACTTAATTCTTGCCGTGGTCGCAATGGCTTATGAAGAACAA
CACCAGGTGAGATTGTCGGAGGAAGAACGGAAGAAGGCGCAGATGCAAAAGAAGAAGGAA
GAGCTCGAGAACATCCTCATGGAAGTTAACAAAGCCGAGAGCAGACTGCAAAGTAGACGG
GTAAGGAGGAATCATGTAACTCCGGGTACTCCGACTGTGTCCTCCCCTTCGTCTCCACGA
TCTCTCTCTTCCCGTCGCTCTTCGATCCGGAAGAAGCATAACCGCTGGCTGTTGGGCAAC
TCCATCAAGGAGAAAAAAGAAAAAGAAGAGGCTGCCAGACAGGCTGCTTCGAGGCTAGCC
GTGGAGGTGAGGACGCGAGTTGACAATCCTCCTTCTGGTTCGACTCCAAGAGCCTCGATT
CGAAACCTTCGTCTCTCCCCTTCCGTGATGAAGAAAGATTCGTTGACAGTAAATCGTTTA
ATTGAATCTTATTTTTTACCAGAATGTTACGACTCGGATTTTGCCGACGACGAAAGCTCA
GACCGATTGAGCGTTGATGACGTCAGCGCCAAACTTGCCCCGTCACGACACGCAAGCACA
AACGGACATACAAACAGCTGGGAAATTGGATTCCAGCAAACAAATGCACATCATCCATTA
TTCATTTTGTGCCCAGCTCGCTCCAACAGCACGAACAACGGGACAGTGGTGGATAGGAAC
GGGGTGGTATCACTGCTACATAGAAACACTTTTACCAACAATACGTCACTTCCGGAAGTT
CTGGTAGAACGACCTCGACACGACAGCGAATGTACGTCTTGCGATGGTGAACTAATACAT
ATGGACACATTGAAACCAACCTTACAACGCTCAAGACTCGCATCCATCGACCAACTAACC
GAACCCGAACTCGCAATAGTAAAACGTATGGACGATCAGAGAAAATGTGGTGCATGCTGG
TACCGTTTTACTGATGTATTCTGCATATGGAATTGCTGTGGTTGTTGGATTAAATTTCAA
AAGATAATGAGGAAAATTTGCGATGACCCATTTTTTGATCTTTTCATTACAATTTGCATC
GTGGCAAACACGGCGTTTTTAGCTCTTGAGCAACACCCCATGGATCCAGCGTTGAACAAT
GTGCTCAAATCTGCAAACATTTTCTTCACTTCCATTTTTACTGCTGAGCTCATAATAAAG
ATGGTTGGGCTGCAGCCGTTCTATTACTTCCAGGAGACTTGGAACTGCTTCGACTCAATT
ATTGTTGCTGCCTCATTACTTGAGTTTCCGCTGCAAGGATTAAATGGCCTGTCGGTTTTG
AGGTCATTTCGGCTGATGCGAGTCTTCAAACTTGCTAAGTCATGGCCAACTCTCAATATG
CTGATCAAGATTATTGGAAATTCAATGGGATCTTTGGGAAACCTTGTGCTCATATTGTTC
ATCTTGCTGTTCATATTTGCTGTTGTGGGGATGCAGCTGTTCAGGGAGAAATACAATGCA
GTGGAGGGCGAACTCCGGTGGCACATGAAAGACTTTGGTCATTCCTTTCTCATAGTTTTC
CGCATTCTATGTGGGGAATGGATTGAAACAATGTGGGGCTGCATGCACTATGGCAAAGAA
ATATCTGCGCTATGTATCCCAATGTTTATGTTGGTACAAGTGGTCGGAAATCTTGTCGTT
TTGAATTTATTTCTTGCGTTGCTGTTGAGCTCATTCAGTGCTGATTCTTTCTCTTCGGAT
GAAGAAGAAGCCCCAAACGCAATCCAACTTTCCAAGATTCGCATCCAGCGGTGGATAGTG
TTTGGACGAAGAAACCTTCGGCAGCCAAGTAGTGTTTTAAACAACGAAGTTAAGACCAAG
TCGACTGCAATTTCCGGCAACATCTTTCAAAATGATATGGTCACTGTGTACATTGATCCA
CCTGAAAAGGAAAATGTTTCCATAACAGACATCAGACCCGCTTTGTGCTCGTCCACCGGT
GCAGGTGTTCAGTCGTCAGATTGTAGATATGACGTGGCTGTTGATCTGCAGACTGATTTA
AATTCTTCAAACATGGGCCTTGTGAAAGTTCCAATCGCTGCAATTGAATCAGACCTGGAC
AATCAAGATTCAGAAAATGATTCAGACAATTCCAGTATTTGCACAAATAAATCGTATGGC
AGCGACATAAGTTCATGTACATCATCTAGTATGAGCAACACTGAGTATGAACAGATGCAG
AAAAATAAGGAAGAGGAACCATCAGCATGTTGGCCTGACAGATGCAGCACAAGACTCGCT
TGTTGTCGGCCCCCTGTCGATCAAGGAATCTACCGTGTTTGGTGGAATGCCAGAAAAATA
TGTTTTCGTATTGTCGAGCACTCCTGGTTCGAATTTTTCATTATTCTGATGATTCTACTA
AGCAGTGGAGCCTTGGCATTTGAAGATGTACATTTCCGTGACCGCAAGGCTCTCCGACAA
GTGTTAAAATATGCTGATCGAATATTCACTTACGTCTTCATATTTGAAATGCTGCTTAAA
TGGGTAGGATACGGCTTTAAGAAGTATTTCACCAACGCATGGTGCTGGCTTGACTTCTTT
ATTGTTGGAGTTTCGATTGTCGGTCTTGTGGCTGAGGCTTTAAAAATTGATAATTTATCA
AGTATCCGCTCGCTTAGAACTCTCCGTGCATTTCGGCCTCTTCGTGCAATGTCCAGGTTC
GAAGGAATGAAGGTTGTGGTGAATGCTTTGATTGGAGCCATTCCATCGATTGGAAATGTT
CTGATGGTTTGTCTCATATTCTGGATGATATTCTCCATAATGGGAGTCAATTTGTTTGCG
GGAAAGTTCTTTAAGTGCTTAAATATAACAGACAATGTGAAATTGCCAGCAACCAACTTT
ACATATGCCAACATTACTTATCCTGTGATTAACAAGACAATATGTCAATATCTCACTAAT
AATGTGTCTCCGGAAATTCGATGGAAAAATGGTGATGTAAACTTTGACAACGCGCTGGCA
GGTTATCTGGCATTATTGCAGGTGGCAACATTTAAGGGCTGGACAGTAATTATGTATGAT
GCTGTTGATATTACTGATGATGATAAGCAGCCAATATTTGAAAACAGTGTTTGGTTCTAT
CTTTATTTTGTTGGCTTTATTGTGTTTGGTAGCTTCTTCACCTTGAATCTATTCATTGGT
GTTATCATTGACAACTTTAACCAGCAGAAGAAAAAGCTGGGTGGGCAAGACATTTTTATG
ACAGAAGAACAAAGAAAGTATTACAATGCTATGAAGAAACTGGGATCTAAAAAGCCACAG
AAACCAGTCCCCCGGCCAAAGAACAAACTTCAAGCATGGGTTTTTGACATTGTGACTCAC
CAAATGTTTGAGATTACCATTATGCTTTTGATCGTTGCTAACATGATCACTATGATGATA
GAATCCCACAACATGTCTAAAACATTCGAAGCAATACTAGAATATGTCAACTATGTGTTT
GTTGCCATTTTTACAGGAGAAGCATTGATCAAAATGTTTGCTTTGCGGCACCACTACTTC
AAGAATCCATGGAATTTATTCGATTTTAATGTTGTAATACTTTCTATCATTGGAAGCACA
ATGAGCGAACTAATTAATAAATACTTTGTTCAGCCAACCCTGTTCCGTATTATCCGTCTT
GCTCGGATTGGACGGATTCTGCGGTTAATCAAAGGAGCAAAAGGGATCCGGACTTTGCTC
TTTGCTCTTATGATGTCACTTCCTGCTCTTGTCAACATTGGGCTACTGCTTATACTGGTT
ATGTTCATTTATTCTATCTTCGGCATGTCCCAATTCGCATATGTGCGTAGAAGTGGCGGT
GTTGATGATATCTTCAATTTTGAAACATTTGCAAACTCTTTCCTTTGTCTGTTTATGATT
ACCACATCAGCAGGTTGGGATGGACTTTTGAGCCCCATGCTCAACTCGGAATACCCATAC
TGTGATCCTGATCTAAACAATGGAAATCCCAATGATACGGGTGATTGTGGGAGCCCCACT
ACAGCCATCGGTTTCTTTGTCACTTATCTCATATTCACGTTTTTAATTGTTGTAAACATG
TACATCGCAATTATCCTGGAAAACTTTGGTGTTGCCACGGAGGAGAGTACAGATCCACTC
GGCGAAGATGATTTTGAGATGTTCTATGAGATATGGGAGCGATTTGATCCGAAAGCAACA
CAATTTATAACCTATGCGAACCTGTCGGATTTTGTTGATAGTCTGGATCCTCCACTCCGA
GTACCAAAGCCTAACCTGCACAGTCTGAACAGCATGGACCTGCCCATGGTGATTGGTGAT
CGACTGCATTGCCTCGATGTACTCTTTGCGCTCACCAAACGGGTCCTGGGAGAGTCAGAT
GAGCTGGAAGGTCTTCGATCTTCCATGGAGGAGAAGTTTATGGCTTCGAATCCATCAAAA
GTTTCCTATGAGCCGATCACAACAACTCTGAAAAGAAAGCAGGAGGAGATATCTGCCGTG
ATGATCCAGCGGTGGTGGAGAAGAATTCGTCTCCTCCGTACTGTACGTATTGCATCCATG
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[83-196] 1.4E-17 - T[719-834] 3.1E-32 - T[1159-1281] 3.9E-30 - T[1491-1613] 1.2E-40 |
| Pfam |
Ion_trans_dom (IPR005821) - T[92-402] 1.3E-69 - T[730-953] 8.2E-51 - T[1167-1452] 6.9E-63 - T[1500-1755] 8.5E-52 |
| Pfam |
Na_trans_assoc (IPR010526) - T[966-1163] 2.4E-18 |
| PRINTS |
Na_channel_asu (IPR001696) - T[1728-1747] 5.4E-12 - T[1763-1776] 5.4E-12 |
| Pfam |
GPHH_dom (IPR031649) - T[1760-1799] 1.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SCN1A_HUMAN | 52.029 % | 1840 | 0 |
| SCN2A_HUMAN | 51.81 % | 1815 | 0 |
| SCN3A_HUMAN | 51.76 % | 1805 | 0 |