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  1. Clone 'citb029g22' > 
  2. Transcript 'KH2012:KH.C1.1040.v1...' > 
  3. Transcript 'KH2012:KH.C6.272.v1....' > 
  4. Clone 'ma170p14' > 
  5. Transcript 'Cisavi.CG.ENS81.R156...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R156.1029810-1050356.16602.t

Possible name(s)

SCN1A; SCN2A; SCN9A

Gene model

Cisavi.CG.ENS81.R156.1029810-1050356

Location

R156 [1,029,854 / 1,050,317]

Sequences

Amino acid sequence

Length: 1,899

>Cisavi.CG.ENS81.R156.1029810-1050356.16602.p
KANADLEQGKTLPEYLQGDVPDGYKCRPLVDPDPYYDDKNTYIILDQNYVIYRFSATRSL
YFIGALNIFRRIAARILVHSYPFTHIIIFSRIIIMLTILVNCIFMTMDTTDKDWVNDYVE
RVFLGIYSFEMIVKVISRGFITSSFTYMRDPWNLLDISVIFTAYLSEILIAFHVGIDKLT
VLRAFRVIRALKTISAHAGLKAIVSALIESVKALKDVMILTLFCLSVFALIGLQLFMGSL
RQKCIKTWPPRLVDFLYNQYNPNINVRLFCFCYNNTLLEAWNTQNYSVVTEPFYRMWLCG
NGSGTGHCWEGYTCYRAGPNPNYNYTSFDNFLWAFLSLFRLMAQDYWENLYMLTLRANGQ
VYLIFFMLVIFLGSFYLVNLILAVVAMAYEEQHQVRLSEEERKKAQMQKKKEELENILME
VNKAESRLQSRRVRRNHVTPGTPTVSSPSSPRSLSSRRSSIRKKHNRWLLGNSIKEKKEK
EEAARQAASRLAVEVRTRVDNPPSGSTPRASIRNLRLSPSVMKKDSLTVNRLIESYFLPE
CYDSDFADDESSDRLSVDDVSAKLAPSRHASTNGHTNSWEIGFQQTNAHHPLFILCPARS
NSTNNGTVVDRNGVVSLLHRNTFTNNTSLPECTSCDGELIHMDTLKPTLQRSRLASIDQL
TEPELAIVKRRALSQASIMSAGMDDQRKCGACWYRFTDVFCIWNCCGCWIKFQKIMRKIC
DDPFFDLFITICIVANTAFLALEQHPMDPALNNVLKSANIFFTSIFTAELIIKMVGLQPF
YYFQETWNCFDSIIVAASLLEFPLQGLNGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGN
SMGSLGNLVLILFILLFIFAVVGMQLFREKYNAVEGELRWHMKDFGHSFLIVFRILCGEW
IETMWGCMHYGKEISALCIPMFMLVQVVGNLVVLNLFLALLLSSFSADSFSSDEEEAPNA
IQLSKIRIQRWIVFGRRNLRQPSSVLNNEVKTKSTAISGNIFQNDMVTVYIDPPEKENVS
ITDIRPALCSSTGAGVQSSDCRYDVAVDLQTDLNSSNMGLVKVPIAAIESDLDNQDSEND
SDNSSICTNKSYGSDISSCTSSSMSNTEYEQMQKNKEEEGLIADEPSACWPDRCSTRLAC
CRPPVDQGIYRVWWNARKICFRIVEHSWFEFFIILMILLSSGALAFEDVHFRDRKALRQV
LKYADRIFTYVFIFEMLLKWVGYGFKKYFTNAWCWLDFFIVGVSIVGLVAEALKIDNLSS
IRSLRTLRAFRPLRAMSRFEGMKVVVNALIGAIPSIGNVLMVCLIFWMIFSIMGVNLFAG
KFFKCLNITDNVKLPATNFTYANITYPVINKTICQYLTNNVSPEIRWKNGDVNFDNALAG
YLALLQVATFKGWTVIMYDAVDITDDDKQPIFENSVWFYLYFVGFIVFGSFFTLNLFIGV
IIDNFNQQKKKLGGQDIFMTEEQRKYYNAMKKLGSKKPQKPVPRPKNKLQAWVFDIVTHQ
MFEITIMLLIVANMITMMIESHNMSKTFEAILEYVNYVFVAIFTGEALIKMFALRHHYFK
NPWNLFDFNVVILSIIGSTMSELINKYFVQPTLFRIIRLARIGRILRLIKGAKGIRTLLF
ALMMSLPALVNIGLLLILVMFIYSIFGMSQFAYVRRSGGVDDIFNFETFANSFLCLFMIT
TSAGWDGLLSPMLNSEYPYCDPDLNNGNPNDTGDCGSPTTAIGFFVTYLIFTFLIVVNMY
IAIILENFGVATEESTDPLGEDDFEMFYEIWERFDPKATQFITYANLSDFVDSLDPPLRV
PKPNLHSLNSMDLPMVIGDRLHCLDVLFALTKRVLGESDELEGLRSSMEEKFMASNPSKV
SYEPITTTLKRKQEEISAVMIQRWWRRIRLLRTVRIASM

Nucleotide sequence

Length: 5,697

>Cisavi.CG.ENS81.R156.1029810-1050356.16602.t
AAGGCGAACGCGGATCTCGAACAAGGAAAAACGCTTCCGGAGTATTTACAGGGTGATGTA
CCGGATGGCTACAAATGTCGACCTTTGGTTGACCCCGACCCATATTATGATGACAAAAAT
ACCTATATTATCCTGGATCAAAACTATGTCATCTACCGGTTCAGCGCAACCAGATCGCTC
TACTTTATTGGAGCGCTCAATATATTCCGAAGAATCGCAGCGCGAATTTTGGTTCATTCA
TATCCTTTTACACATATTATTATATTTTCCCGGATCATAATCATGTTAACGATATTGGTC
AACTGTATATTCATGACGATGGACACAACTGATAAAGACTGGGTCAACGACTACGTTGAG
CGAGTTTTCTTGGGAATATACTCGTTCGAGATGATTGTAAAGGTTATATCTCGAGGATTT
ATCACCTCCAGTTTCACGTACATGCGTGACCCTTGGAACCTACTTGATATAAGCGTTATA
TTCACTGCATATTTATCAGAGATATTGATTGCCTTCCATGTGGGAATCGATAAGTTAACT
GTACTCCGTGCTTTCCGAGTTATTAGGGCGCTAAAAACCATCTCCGCACATGCAGGTTTA
AAAGCAATTGTTTCTGCTCTAATCGAGTCGGTAAAAGCGCTAAAAGACGTCATGATTTTG
ACTCTTTTTTGTCTCTCTGTTTTCGCTCTCATTGGTTTGCAGCTATTTATGGGAAGTCTT
CGACAGAAATGTATCAAGACGTGGCCGCCCAGGTTAGTTGACTTTCTTTACAATCAATAC
AATCCTAATATAAACGTGCGACTCTTCTGTTTTTGTTACAACAACACCCTTCTTGAAGCG
TGGAACACTCAAAATTACTCTGTTGTTACTGAACCCTTCTACCGTATGTGGTTGTGTGGA
AATGGCTCTGGAACAGGACACTGTTGGGAAGGCTACACATGCTACCGTGCTGGCCCTAAT
CCAAACTACAACTATACAAGCTTTGACAACTTTCTCTGGGCGTTTCTCTCTCTCTTTAGA
CTGATGGCGCAGGATTACTGGGAAAATCTATATATGTTGACACTGCGGGCGAACGGGCAG
GTATATCTCATATTCTTCATGCTGGTTATCTTCCTCGGCTCGTTTTATCTTGTCAACTTA
ATTCTTGCCGTGGTCGCAATGGCTTATGAAGAACAACACCAGGTGAGATTGTCGGAGGAA
GAACGGAAGAAGGCGCAGATGCAAAAGAAGAAGGAAGAGCTCGAGAACATCCTCATGGAA
GTTAACAAAGCCGAGAGCAGACTGCAAAGTAGACGGGTAAGGAGGAATCATGTAACTCCG
GGTACTCCGACTGTGTCCTCCCCTTCGTCTCCACGATCTCTCTCTTCCCGTCGCTCTTCG
ATCCGGAAGAAGCATAACCGCTGGCTGTTGGGCAACTCCATCAAGGAGAAAAAAGAAAAA
GAAGAGGCTGCCAGACAGGCTGCTTCGAGGCTAGCCGTGGAGGTGAGGACGCGAGTTGAC
AATCCTCCTTCTGGTTCGACTCCAAGAGCCTCGATTCGAAACCTTCGTCTCTCCCCTTCC
GTGATGAAGAAAGATTCGTTGACAGTAAATCGTTTAATTGAATCTTATTTTTTACCAGAA
TGTTACGACTCGGATTTTGCCGACGACGAAAGCTCAGACCGATTGAGCGTTGATGACGTC
AGCGCCAAACTTGCCCCGTCACGACACGCAAGCACAAACGGACATACAAACAGCTGGGAA
ATTGGATTCCAGCAAACAAATGCACATCATCCATTATTCATTTTGTGCCCAGCTCGCTCC
AACAGCACGAACAACGGGACAGTGGTGGATAGGAACGGGGTGGTATCACTGCTACATAGA
AACACTTTTACCAACAATACGTCACTTCCGGAATGTACGTCTTGCGATGGTGAACTAATA
CATATGGACACATTGAAACCAACCTTACAACGCTCAAGACTCGCATCCATCGACCAACTA
ACCGAACCCGAACTCGCAATAGTAAAACGTCGAGCATTGAGCCAAGCGTCAATTATGAGT
GCAGGTATGGACGATCAGAGAAAATGTGGTGCATGCTGGTACCGTTTTACTGATGTATTC
TGCATATGGAATTGCTGTGGTTGTTGGATTAAATTTCAAAAGATAATGAGGAAAATTTGC
GATGACCCATTTTTTGATCTTTTCATTACAATTTGCATCGTGGCAAACACGGCGTTTTTA
GCTCTTGAGCAACACCCCATGGATCCAGCGTTGAACAATGTGCTCAAATCTGCAAACATT
TTCTTCACTTCCATTTTTACTGCTGAGCTCATAATAAAGATGGTTGGGCTGCAGCCGTTC
TATTACTTCCAGGAGACTTGGAACTGCTTCGACTCAATTATTGTTGCTGCCTCATTACTT
GAGTTTCCGCTGCAAGGATTAAATGGCCTGTCGGTTTTGAGGTCATTTCGGCTGATGCGA
GTCTTCAAACTTGCTAAGTCATGGCCAACTCTCAATATGCTGATCAAGATTATTGGAAAT
TCAATGGGATCTTTGGGAAACCTTGTGCTCATATTGTTCATCTTGCTGTTCATATTTGCT
GTTGTGGGGATGCAGCTGTTCAGGGAGAAATACAATGCAGTGGAGGGCGAACTCCGGTGG
CACATGAAAGACTTTGGTCATTCCTTTCTCATAGTTTTCCGCATTCTATGTGGGGAATGG
ATTGAAACAATGTGGGGCTGCATGCACTATGGCAAAGAAATATCTGCGCTATGTATCCCA
ATGTTTATGTTGGTACAAGTGGTCGGAAATCTTGTCGTTTTGAATTTATTTCTTGCGTTG
CTGTTGAGCTCATTCAGTGCTGATTCTTTCTCTTCGGATGAAGAAGAAGCCCCAAACGCA
ATCCAACTTTCCAAGATTCGCATCCAGCGGTGGATAGTGTTTGGACGAAGAAACCTTCGG
CAGCCAAGTAGTGTTTTAAACAACGAAGTTAAGACCAAGTCGACTGCAATTTCCGGCAAC
ATCTTTCAAAATGATATGGTCACTGTGTACATTGATCCACCTGAAAAGGAAAATGTTTCC
ATAACAGACATCAGACCCGCTTTGTGCTCGTCCACCGGTGCAGGTGTTCAGTCGTCAGAT
TGTAGATATGACGTGGCTGTTGATCTGCAGACTGATTTAAATTCTTCAAACATGGGCCTT
GTGAAAGTTCCAATCGCTGCAATTGAATCAGACCTGGACAATCAAGATTCAGAAAATGAT
TCAGACAATTCCAGTATTTGCACAAATAAATCGTATGGCAGCGACATAAGTTCATGTACA
TCATCTAGTATGAGCAACACTGAGTATGAACAGATGCAGAAAAATAAGGAAGAGGAAGGC
TTGATTGCGGATGAGCCATCAGCATGTTGGCCTGACAGATGCAGCACAAGACTCGCTTGT
TGTCGGCCCCCTGTCGATCAAGGAATCTACCGTGTTTGGTGGAATGCCAGAAAAATATGT
TTTCGTATTGTCGAGCACTCCTGGTTCGAATTTTTCATTATTCTGATGATTCTACTAAGC
AGTGGAGCCTTGGCATTTGAAGATGTACATTTCCGTGACCGCAAGGCTCTCCGACAAGTG
TTAAAATATGCTGATCGAATATTCACTTACGTCTTCATATTTGAAATGCTGCTTAAATGG
GTAGGATACGGCTTTAAGAAGTATTTCACCAACGCATGGTGCTGGCTTGACTTCTTTATT
GTTGGAGTTTCGATTGTCGGTCTTGTGGCTGAGGCTTTAAAAATTGATAATTTATCAAGT
ATCCGCTCGCTTAGAACTCTCCGTGCATTTCGGCCTCTTCGTGCAATGTCCAGGTTCGAA
GGAATGAAGGTTGTGGTGAATGCTTTGATTGGAGCCATTCCATCGATTGGAAATGTTCTG
ATGGTTTGTCTCATATTCTGGATGATATTCTCCATAATGGGAGTCAATTTGTTTGCGGGA
AAGTTCTTTAAGTGCTTAAATATAACAGACAATGTGAAATTGCCAGCAACCAACTTTACA
TATGCCAACATTACTTATCCTGTGATTAACAAGACAATATGTCAATATCTCACTAATAAT
GTGTCTCCGGAAATTCGATGGAAAAATGGTGATGTAAACTTTGACAACGCGCTGGCAGGT
TATCTGGCATTATTGCAGGTGGCAACATTTAAGGGCTGGACAGTAATTATGTATGATGCT
GTTGATATTACTGATGATGATAAGCAGCCAATATTTGAAAACAGTGTTTGGTTCTATCTT
TATTTTGTTGGCTTTATTGTGTTTGGTAGCTTCTTCACCTTGAATCTATTCATTGGTGTT
ATCATTGACAACTTTAACCAGCAGAAGAAAAAGCTGGGTGGGCAAGACATTTTTATGACA
GAAGAACAAAGAAAGTATTACAATGCTATGAAGAAACTGGGATCTAAAAAGCCACAGAAA
CCAGTCCCCCGGCCAAAGAACAAACTTCAAGCATGGGTTTTTGACATTGTGACTCACCAA
ATGTTTGAGATTACCATTATGCTTTTGATCGTTGCTAACATGATCACTATGATGATAGAA
TCCCACAACATGTCTAAAACATTCGAAGCAATACTAGAATATGTCAACTATGTGTTTGTT
GCCATTTTTACAGGAGAAGCATTGATCAAAATGTTTGCTTTGCGGCACCACTACTTCAAG
AATCCATGGAATTTATTCGATTTTAATGTTGTAATACTTTCTATCATTGGAAGCACAATG
AGCGAACTAATTAATAAATACTTTGTTCAGCCAACCCTGTTCCGTATTATCCGTCTTGCT
CGGATTGGACGGATTCTGCGGTTAATCAAAGGAGCAAAAGGGATCCGGACTTTGCTCTTT
GCTCTTATGATGTCACTTCCTGCTCTTGTCAACATTGGGCTACTGCTTATACTGGTTATG
TTCATTTATTCTATCTTCGGCATGTCCCAATTCGCATATGTGCGTAGAAGTGGCGGTGTT
GATGATATCTTCAATTTTGAAACATTTGCAAACTCTTTCCTTTGTCTGTTTATGATTACC
ACATCAGCAGGTTGGGATGGACTTTTGAGCCCCATGCTCAACTCGGAATACCCATACTGT
GATCCTGATCTAAACAATGGAAATCCCAATGATACGGGTGATTGTGGGAGCCCCACTACA
GCCATCGGTTTCTTTGTCACTTATCTCATATTCACGTTTTTAATTGTTGTAAACATGTAC
ATCGCAATTATCCTGGAAAACTTTGGTGTTGCCACGGAGGAGAGTACAGATCCACTCGGC
GAAGATGATTTTGAGATGTTCTATGAGATATGGGAGCGATTTGATCCGAAAGCAACACAA
TTTATAACCTATGCGAACCTGTCGGATTTTGTTGATAGTCTGGATCCTCCACTCCGAGTA
CCAAAGCCTAACCTGCACAGTCTGAACAGCATGGACCTGCCCATGGTGATTGGTGATCGA
CTGCATTGCCTCGATGTACTCTTTGCGCTCACCAAACGGGTCCTGGGAGAGTCAGATGAG
CTGGAAGGTCTTCGATCTTCCATGGAGGAGAAGTTTATGGCTTCGAATCCATCAAAAGTT
TCCTATGAGCCGATCACAACAACTCTGAAAAGAAAGCAGGAGGAGATATCTGCCGTGATG
ATCCAGCGGTGGTGGAGAAGAATTCGTCTCCTCCGTACTGTACGTATTGCATCCATG

InterProScan

Gene3D
Volt_channel_dom_sf (IPR027359) - T[83-196] 1.4E-17 - T[712-827] 3.1E-32 - T[1158-1280] 3.9E-30 - T[1490-1612] 1.2E-40
Pfam
Ion_trans_dom (IPR005821) - T[92-394] 2.8E-70 - T[723-946] 8.2E-51 - T[1166-1451] 6.8E-63 - T[1499-1754] 8.4E-52
Pfam
Na_trans_assoc (IPR010526) - T[959-1162] 2.2E-19
PRINTS
Na_channel_asu (IPR001696) - T[1727-1746] 5.4E-12 - T[1762-1775] 5.4E-12
Pfam
GPHH_dom (IPR031649) - T[1759-1798] 1.4E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SCN1A_HUMAN 52.192 % 1823 0
SCN2A_HUMAN 51.903 % 1816 0
SCN3A_HUMAN 51.831 % 1811 0