Aniseed - Transcript Card

Transcript 'Cisavi.CG.ENS81.R156...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R156.157534-169654.14315.t

Possible name(s)

TBX3; TBX4; TBX6

Gene model

Cisavi.CG.ENS81.R156.157534-169654

Location

R156 [160,909 / 165,816]

Sequences

Amino acid sequence

Length: 202

>Cisavi.CG.ENS81.R156.157534-169654.14315.p
MFPGYRVKIIGMDPNAQYCVLIDISSVDESRYKFQHGKWVIAGRGEPHIPQRFYVHPNSP
CTGQKWMENIVSFHKVKLTNSCGNCGEGKFFVHSMHRYQPRLHIVRTDDVNTLHLQPMST
FAFPQTSFTTVTAYQNGEIAKLKIANNPYARGFREDGAKTMNAKSTLASFTRPVSTTHKR
RCTPNTTSPNSTKRVKLDYTPA

Nucleotide sequence

Length: 771

>Cisavi.CG.ENS81.R156.157534-169654.14315.t
ACGAAGATTCTAGAACATTAAAAGATGATAATGAAAATTGCAAATTCAAACCATCAAGCG
ATGAGCTCACGATCCGGACCGCAAGTTCATCTTCACGATGTGCAGTTATGGGACAACTTC
TCAGCTGCTCAGACTGAAATGATTGTTACTAAAACCGGAAGCGAATGTTCCCTGGTTACC
GAGTTAAAATAATTGGGATGGACCCGAACGCTCAGTATTGCGTATTGATAGACATTTCGA
GTGTGGATGAAAGCAGATACAAGTTTCAACACGGGAAGTGGGTGATAGCTGGTCGTGGAG
AACCACACATCCCACAAAGATTTTATGTGCACCCGAACTCACCTTGTACCGGACAAAAAT
GGATGGAAAATATCGTTTCTTTCCACAAAGTTAAATTAACCAATTCATGTGGGAATTGTG
GAGAAGGAAAGTTCTTCGTACATTCCATGCATCGATATCAACCTCGTCTCCACATTGTTC
GAACTGATGACGTCAATACGTTACATCTTCAACCGATGTCAACTTTCGCTTTCCCACAAA
CTTCCTTTACAACGGTCACAGCATACCAGAACGGAGAGATCGCTAAGTTAAAGATAGCCA
ACAACCCTTACGCCCGAGGCTTCAGAGAAGACGGAGCGAAGACTATGAACGCGAAATCGA
CACTTGCGTCATTTACTCGACCTGTATCAACCACCCACAAGCGAAGATGCACTCCAAACA
CCACTTCTCCGAATTCCACAAAACGAGTGAAACTTGATTACACACCAGCAG

InterProScan

Pfam	TF_T-box (IPR001699) - T[1-155] 4.4E-58
SMART	TF_T-box (IPR001699) - T[1-160] 3.2E-64
ProSiteProfiles	TF_T-box (IPR001699) - T[1-155] 58.313
PANTHER	TF_T-box (IPR001699) - T[1-172] 1.5E-97
SUPERFAMILY	p53-like_TF_DNA-bd (IPR008967) - T[1-155] 1.06E-57
Gene3D	T-box_sf (IPR036960) - T[1-160] 7.9E-65
PRINTS	TF_Brachyury (IPR002070) - T[34-54] 1.6E-5 - T[96-113] 1.6E-5
PRINTS	TF_T-box (IPR001699) - T[54-67] 1.6E-25 - T[71-80] 1.6E-25 - T[91-105] 1.6E-25 - T[126-139] 1.6E-25 - T[147-155] 1.6E-25
ProSitePatterns	TF_T-box_CS (IPR018186) - T[55-73] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TBX6_HUMAN	50.955 %	182	6.98E-56
TBX2_HUMAN	42.932 %	177	5.74E-52
TBX4_HUMAN	51.923 %	174	8.78E-52