Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R156.610710-623806.16073.t

Possible name(s)

CDH11; CDH4; CDH6

Gene model

Cisavi.CG.ENS81.R156.610710-623806

Location

R156 [610,709 / 617,832]

Sequences

Amino acid sequence

Length: 249

>Cisavi.CG.ENS81.R156.610710-623806.16073.p
MARSVATLTKSFDVNQQSKYELPIIMSDGPSPPEPRLTSTATLTINICRCEKRDDDNVVC
LDAFVAPGGVNIVLILAIIAAFILLLIIVLAVVAYRRRQQAGLEKEILLDDDDVRENLQA
YHDEGGGEEDNDGYDISALQAPPPNSVKPKVIDVRPLGGAQPESRRPIQPDTDIGNYIGD
AKQQADNDPTAPPFDSLLVFDYEGQGSDAGSLSSINSGTTDASQDYDYLNNWGPRFKKLA
DMYGGGESE

Nucleotide sequence

Length: 1,634

>Cisavi.CG.ENS81.R156.610710-623806.16073.t
GCGTCAAAGCCACATCTACTGCAAATGTTGCGATACGGATTAACGATAAAAATGACAACG
CACCTGAACCTGATGGCCCATGGACCGTCACGATATGCGAAGTACCCCCTGAACCCAGGG
TCACAACCATCAATATTAAAGACAAGGACGAACCAAAGAATGGACCACCTTTCACAGTTA
CCATCGATGACGCATCCGGACTTTGGGTGCTTGAAAATGTGGCAGAAAACCCAATGGCGC
GCTCGGTGGCGACGTTGACGAAAAGCTTCGACGTCAACCAGCAATCGAAGTACGAACTCC
CCATCATAATGTCGGACGGACCATCCCCACCTGAACCTCGGCTTACCAGCACTGCCACTC
TCACCATCAACATTTGCCGATGCGAGAAGAGAGATGATGATAACGTTGTTTGTCTCGATG
CATTCGTGGCTCCAGGAGGAGTTAATATTGTCCTTATCCTTGCCATCATTGCTGCGTTTA
TTCTGTTGCTTATTATCGTTCTGGCTGTTGTTGCTTATCGGCGACGACAACAAGCCGGTC
TCGAGAAGGAAATCCTGCTCGATGATGACGACGTGCGAGAGAATCTGCAAGCTTATCACG
ATGAAGGGGGCGGCGAGGAAGACAATGATGGATATGACATCAGCGCTTTACAAGCACCCC
CTCCCAACTCTGTTAAGCCGAAAGTTATTGATGTGCGGCCACTAGGAGGTGCTCAACCTG
AGAGTCGACGGCCGATTCAACCAGACACCGATATCGGAAATTATATCGGCGATGCGAAAC
AACAAGCGGACAACGACCCCACAGCGCCACCATTTGATTCCCTCCTTGTGTTCGACTACG
AGGGACAGGGGTCGGACGCCGGCTCGCTCAGCTCCATCAACTCTGGGACCACTGACGCCT
CCCAGGACTACGATTACCTGAACAACTGGGGCCCGAGGTTCAAGAAGCTGGCCGACATGT
ACGGGGGTGGCGAGAGTGAATGAACACTCTAGCGATGCTGTGAACCACTAGGAGCCGATA
GAGAGAGAACCCAAAACTCTATAAACAAACTTCTAAAGTACCCTTTCCAGAACATTCCGC
TCAATTTTTCTGAAATTTCAGAGCTGATTTTTAGTGTTTCACGCTAATTTGTGTGTTGAC
GCGATTTGTTATTAATTGTGCGCCACTGTCCGTGGATTATGCTGTATATATAGCATTATA
TGACAATCTTATCTGTGGTGCTAACTCTTGATGTGTATATTTCTGTACCGGATACCGGTT
TCCTATTTATCGAGGAATTTATTTTGCATATATCGGATGAAGTTATTAACAAATGAAACT
TTTCTTGTAATTTCTGTAAAATCATTAGTTTTTACTACCTTCAAGTTGTGTGCTTTTTTA
TGTAGTACTTTTTGTATCTAAACTGGTATGAATTGGATCAAACCTAAATTAATTGCCCAG
TCGATACTATGTGTGAAATTTTATGCTTTGTATATAATTTTGTAGTATGACGTCACATTG
CTGCCAGTCACGTCACAAACGCTGTAGAATGAGCACCATAAAATGAATTTTATAAAGTTT
TTTCAACTAAACGGGTGCCTTTTACAGGTTTTAACTTTTACAATTTTAAATCCAACTTTT
ATAACGATGAACTT

InterProScan

SUPERFAMILY	Cadherin-like (IPR015919) - T[7-48] 9.89E-6
Pfam	Cadherin_cytoplasmic-dom (IPR000233) - T[105-245] 7.2E-49
Gene3D	Catenin_binding_dom_sf (IPR027397) - T[153-249] 5.8E-37

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CAD12_HUMAN	41.633 %	185	5.56E-54
CADH6_HUMAN	37.959 %	184	1.67E-53
CAD11_HUMAN	44.351 %	182	6.1E-53