- Transcript 'KH2012:KH.C11.13.v1....' >
- Transcript 'KH2012:KH.C5.42.v2.A...' >
- Clone 'cima86925' >
- Clone 'cien50076' >
- Transcript 'Cisavi.CG.ENS81.R156...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R156.610710-623806.16074.t
Possible name(s)
CDH11; CDH4; CDH6
Gene model
Location
R156 [611,274 / 622,058]
Amino acid sequence
Length: 651
>Cisavi.CG.ENS81.R156.610710-623806.16074.p
VEDRNDNSPIFNVATLQGSVREDASPGTPVTTVVATDRDDPTGLDQYGFVSYKLATSPED
PPAPGGQRRFAISESGVITVVGNLDVETAPSVKVVIQAKDGMVNSPGNQVTATATIQISD
ANNRAPVFEGRPYNAKQGELLPLRSTVYSISASDADIDPANKAVTFTITAGDTGGVFDIH
SNFQGGVTQGDITLEKPLDYEKGPKQFILTVNAKNELATNSDDTLYQVDTTVIIDVLDEN
EPPVFINQPYNGAVTENQGPEPNIARVRAQDYDFGGNQTVTYAIVSTEGWFSINEEGSIS
SIAPVDREHPAVNQTSSIYTLVVSSTDNSTSTANVAIRINDKNDNAPEPDGPWTVTICEV
PPEPRVTTINIKDKDEPKNGPPFTVTIDDASGLWVLENENPMARSVATLTKSFDVNQQSK
YELPIIMSDGPSPPEPRLTSTATLTINICRCNDKGELNCETMVPIAGAGFPVALLIAIIA
AILILLIIVLAVVAYRRRQQAGLEKEILLDDDDVRENLQAYHDEGGGEEDNDGYDISALQ
APPPNSVKPKVIDVRPLGGAQPESRRPIQPDTDIGNYIGDAKQQADNDPTAPPFDSLLVF
DYEGQGSDAGSLSSINSGTTDASQDYDYLNNWGPRFKKLADMYGGGEIPFP
Nucleotide sequence
Length: 2,239
>Cisavi.CG.ENS81.R156.610710-623806.16074.t
TTACCCGCCAATACGGATACGTGAGACCATTGAGGGAGATCCACCTTTTCAAACAAAAAA
GCTTTTGGATATCACAAACAACAATGCAAACGTGATGTCATATGAATTGGAAGGACAGGA
CCCCAATAAGTTTTCCATTGAATTCAACGCAGCCGTTCCCAGTGATCCTGCATTTATCTG
GCAGTTGGTGGCCCTTGACCGAGAAGAATTCAGCACCTACTTGTTTTACGCAGTGGTGCG
GGATGCAGCTGGCAATGAGTTGGACAGAGTAAAGTTGGACGTTATAGTAGAAGACAGAAA
TGACAATTCACCAATTTTCAATGTTGCAACTTTGCAAGGAAGTGTGCGAGAAGACGCCTC
ACCAGGAACTCCTGTGACAACAGTGGTTGCCACCGACCGGGATGATCCAACTGGACTCGA
TCAATACGGCTTTGTGTCGTACAAACTCGCAACAAGTCCAGAGGACCCACCAGCACCAGG
AGGACAACGTCGGTTTGCCATATCTGAAAGTGGCGTGATCACAGTTGTTGGGAACTTGGA
TGTGGAAACGGCTCCGTCCGTCAAAGTCGTCATTCAAGCCAAGGATGGAATGGTTAACAG
CCCTGGCAATCAGGTAACAGCTACAGCCACCATTCAAATCTCTGACGCCAACAATCGCGC
TCCTGTGTTCGAAGGCCGGCCATACAACGCAAAGCAAGGGGAATTGTTGCCACTACGATC
AACAGTGTATAGCATCAGCGCTTCAGATGCTGATATTGATCCAGCTAATAAAGCAGTTAC
ATTCACCATCACTGCTGGCGACACTGGAGGGGTGTTCGATATCCATTCAAACTTCCAAGG
TGGCGTCACTCAAGGGGACATCACGTTAGAAAAGCCGCTGGACTATGAGAAAGGGCCGAA
GCAGTTTATACTTACCGTCAACGCCAAGAACGAACTTGCAACAAATAGCGACGATACTCT
ATACCAGGTGGATACAACTGTCATTATTGATGTTCTTGATGAAAATGAACCACCGGTCTT
TATCAACCAACCTTACAATGGAGCTGTCACTGAGAATCAAGGCCCTGAACCCAACATAGC
TCGTGTCCGTGCTCAAGATTATGATTTTGGTGGAAACCAAACAGTAACATATGCGATAGT
CAGCACTGAAGGATGGTTCTCCATCAATGAAGAGGGAAGCATCAGCTCCATTGCTCCAGT
GGACCGGGAGCATCCAGCTGTCAATCAAACCAGCAGCATCTACACACTGGTTGTTAGCTC
CACCGACAACTCCACATCTACTGCAAATGTTGCGATACGGATTAACGATAAAAATGACAA
CGCACCTGAACCTGATGGCCCATGGACCGTCACGATATGCGAAGTACCCCCTGAACCCAG
GGTCACAACCATCAATATTAAAGACAAGGACGAACCAAAGAATGGACCACCTTTCACAGT
TACCATCGATGACGCATCCGGACTTTGGGTGCTTGAAAATGAAAACCCAATGGCGCGCTC
GGTGGCGACGTTGACGAAAAGCTTCGACGTCAACCAGCAATCGAAGTACGAACTCCCCAT
CATAATGTCGGACGGACCATCCCCACCTGAACCTCGGCTTACCAGCACTGCCACTCTCAC
CATCAACATTTGCCGCTGTAATGACAAGGGAGAGTTAAACTGTGAGACCATGGTGCCGAT
AGCTGGGGCAGGATTTCCAGTCGCTCTGCTTATCGCTATAATCGCTGCCATACTTATCCT
ACTCATTATCGTTCTGGCTGTTGTTGCTTATCGGCGACGACAACAAGCCGGTCTCGAGAA
GGAAATCCTGCTCGATGATGACGACGTGCGAGAGAATCTGCAAGCTTATCACGATGAAGG
GGGCGGCGAGGAAGACAATGATGGATATGACATCAGCGCTTTACAAGCACCCCCTCCCAA
CTCTGTTAAGCCGAAAGTTATTGATGTGCGGCCACTAGGAGGTGCTCAACCTGAGAGTCG
ACGGCCGATTCAACCAGACACCGATATCGGAAATTATATCGGCGATGCGAAACAACAAGC
GGACAACGACCCCACAGCGCCACCATTTGATTCCCTCCTTGTGTTCGACTACGAGGGACA
GGGGTCGGACGCCGGCTCGCTCAGCTCCATCAACTCTGGGACCACTGACGCCTCCCAGGA
CTACGATTACCTGAACAACTGGGGCCCGAGGTTCAAGAAGCTGGCCGACATGTACGGGGG
TGGCGAGATACCCTTTCCA
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[1-111] 1.23E-16 - T[122-241] 2.71E-12 - T[234-350] 2.36E-19 - T[343-449] 6.42E-12 |
| PRINTS |
Cadherin (IPR002126) - T[11-40] 3.6E-19 - T[91-103] 3.6E-19 - T[107-126] 3.6E-19 - T[126-139] 3.6E-19 - T[188-214] 3.6E-19 - T[331-348] 3.6E-19 |
| Pfam |
Cadherin (IPR002126) - T[18-118] 3.4E-12 - T[133-225] 5.8E-10 - T[250-339] 9.9E-14 - T[355-449] 4.2E-9 |
| SMART |
Cadherin (IPR002126) - T[33-126] 3.1E-11 - T[150-244] 3.3E-6 - T[267-347] 8.2E-17 - T[369-456] 0.01 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[337-347] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[505-645] 5.8E-48 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[553-648] 6.1E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CAD12_HUMAN | 34.337 % | 302 | 3.39E-92 |
| CADH6_HUMAN | 34.802 % | 305 | 1.33E-93 |
| CAD11_HUMAN | 38.06 % | 322 | 1.57E-99 |