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- Transcript 'Cisavi.CG.ENS81.R156...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R156.610710-623806.16075.t
Possible name(s)
CDH11; CDH4; CDH6
Gene model
Location
R156 [611,278 / 621,138]
Amino acid sequence
Length: 653
>Cisavi.CG.ENS81.R156.610710-623806.16075.p
VKLDVIVEDRNDNSPIFNVATLQGSVREDASPGTPVTTVVATDRDDPTGLDQYGFVSYKL
ATSPEDPPAPGGQRRFAISESGVITVVGNLDVETAPSVKVVIQAKDGMVNSPGNQVTATA
TIQISDANNRAPVFEGRPYNAKQGELLPLRSTVYSISASDADIDPANKAVTFTITAGDTG
GVFDIHSNFQGGVTQGDITLEKPLDYEKGPKQFILTVNAKNELATNSDDTLYQASTTVII
DVLDENEPPVFINQPYNGAVTENQGPEPNIARVRAQDYDFGGNQTVTYAIVSTEGWFSIN
EEGSISSIAPVDREHPAVNQTSSIYTLVVSSTDNYRVKATSTANVAIRINDKNDNAPEPD
GPWTVTICEVPPEPRVTTINIKDKDEPKNGPPFTVTIDDASGLWVLENGKEMMITLFVSM
HSWLQEELILFHFHSKFQFARKSFMINLCDVFCSCNDKGELNCETMVPIAGAGFPVALLI
AIIAAILILLIIVLAVVAYRRRQQAGLEKEILLDDDDVRENLQAYHDEGGGEEDNDGYDI
SALQAPPPNSVKPKVIDVRPLGGAQPESRRPIQPDTDIGNYIGDAKQQADNDPTAPPFDS
LLVFDYEGQGSDAGSLSSINSGTTDASQDYDYLNNWGPRFKKLADMYGGGESE
Nucleotide sequence
Length: 2,044
>Cisavi.CG.ENS81.R156.610710-623806.16075.t
GTAAAGTTGGACGTTATAGTAGAAGACAGAAATGACAATTCACCAATTTTCAATGTTGCA
ACTTTGCAAGGAAGTGTGCGAGAAGACGCCTCACCAGGAACTCCTGTGACAACAGTGGTT
GCCACCGACCGGGATGATCCAACTGGACTCGATCAATACGGCTTTGTGTCGTACAAACTC
GCAACAAGTCCAGAGGACCCACCAGCACCAGGAGGACAACGTCGGTTTGCCATATCTGAA
AGTGGCGTGATCACAGTTGTTGGGAACTTGGATGTGGAAACGGCTCCGTCCGTCAAAGTC
GTCATTCAAGCCAAGGATGGAATGGTTAACAGCCCTGGCAATCAGGTAACAGCTACAGCC
ACCATTCAAATCTCTGACGCCAACAATCGCGCTCCTGTGTTCGAAGGCCGGCCATACAAC
GCAAAGCAAGGGGAATTGTTGCCACTACGATCAACAGTGTATAGCATCAGCGCTTCAGAT
GCTGATATTGATCCAGCTAATAAAGCAGTTACATTCACCATCACTGCTGGCGACACTGGA
GGGGTGTTCGATATCCATTCAAACTTCCAAGGTGGCGTCACTCAAGGGGACATCACGTTA
GAAAAGCCGCTGGACTATGAGAAAGGGCCGAAGCAGTTTATACTTACCGTCAACGCCAAG
AACGAACTTGCAACAAATAGCGACGATACTCTATACCAGGCAAGTACAACTGTCATTATT
GATGTTCTTGATGAAAATGAACCACCGGTCTTTATCAACCAACCTTACAATGGAGCTGTC
ACTGAGAATCAAGGCCCTGAACCCAACATAGCTCGTGTCCGTGCTCAAGATTATGATTTT
GGTGGAAACCAAACAGTAACATATGCGATAGTCAGCACTGAAGGATGGTTCTCCATCAAT
GAAGAGGGAAGCATCAGCTCCATTGCTCCAGTGGACCGGGAGCATCCAGCTGTCAATCAA
ACCAGCAGCATCTACACACTGGTTGTTAGCTCCACCGACAACTACCGCGTCAAAGCCACA
TCTACTGCAAATGTTGCGATACGGATTAACGATAAAAATGACAACGCACCTGAACCTGAT
GGCCCATGGACCGTCACGATATGCGAAGTACCCCCTGAACCCAGGGTCACAACCATCAAT
ATTAAAGACAAGGACGAACCAAAGAATGGACCACCTTTCACAGTTACCATCGATGACGCA
TCCGGACTTTGGGTGCTTGAAAATGGTAAAGAGATGATGATAACGTTGTTTGTCTCGATG
CATTCGTGGCTCCAGGAGGAGTTAATATTATTCCATTTTCATTCCAAGTTTCAATTTGCA
CGCAAATCTTTCATGATTAACCTGTGTGATGTGTTTTGTAGCTGTAATGACAAGGGAGAG
TTAAACTGTGAGACCATGGTGCCGATAGCTGGGGCAGGATTTCCAGTCGCTCTGCTTATC
GCTATAATCGCTGCCATACTTATCCTACTCATTATCGTTCTGGCTGTTGTTGCTTATCGG
CGACGACAACAAGCCGGTCTCGAGAAGGAAATCCTGCTCGATGATGACGACGTGCGAGAG
AATCTGCAAGCTTATCACGATGAAGGGGGCGGCGAGGAAGACAATGATGGATATGACATC
AGCGCTTTACAAGCACCCCCTCCCAACTCTGTTAAGCCGAAAGTTATTGATGTGCGGCCA
CTAGGAGGTGCTCAACCTGAGAGTCGACGGCCGATTCAACCAGACACCGATATCGGAAAT
TATATCGGCGATGCGAAACAACAAGCGGACAACGACCCCACAGCGCCACCATTTGATTCC
CTCCTTGTGTTCGACTACGAGGGACAGGGGTCGGACGCCGGCTCGCTCAGCTCCATCAAC
TCTGGGACCACTGACGCCTCCCAGGACTACGATTACCTGAACAACTGGGGCCCGAGGTTC
AAGAAGCTGGCCGACATGTACGGGGGTGGCGAGAGTGAATGAACACTCTAGCGATGCTGT
GAACCACTAGGAGCCGATAGAGAGAGAACCCAAAACTCTATAAACAAACTTCTAAAGTAC
CCTT
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[5-15] . - T[347-357] . |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[5-117] 1.57E-17 - T[128-247] 1.01E-12 - T[240-360] 1.33E-20 |
| PRINTS |
Cadherin (IPR002126) - T[17-46] 3.6E-19 - T[97-109] 3.6E-19 - T[113-132] 3.6E-19 - T[132-145] 3.6E-19 - T[194-220] 3.6E-19 - T[341-358] 3.6E-19 |
| Pfam |
Cadherin (IPR002126) - T[24-124] 3.4E-12 - T[139-241] 4.2E-10 - T[256-349] 1.6E-14 |
| SMART |
Cadherin (IPR002126) - T[39-132] 3.1E-11 - T[156-250] 8.8E-8 - T[273-357] 2.7E-16 |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[509-649] 5.9E-48 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[557-653] 3.2E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 35.735 % | 278 | 1.83E-82 |
| CADH6_HUMAN | 33.835 % | 285 | 4.66E-86 |
| CAD11_HUMAN | 35.088 % | 288 | 5.16E-87 |