- Transcript 'Cisavi.CG.ENS81.R16....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R16.1116447-1122123.11745.t
Possible name(s)
PABPC3; PUF60; U2AF2
Gene model
Location
R16 [1,116,446 / 1,122,123]
Amino acid sequence
Length: 477
>Cisavi.CG.ENS81.R16.1116447-1122123.11745.p
MANMKQEYPGHMMQQEGGYYNNGDGQFGPPEPEMKSREEKKDRDRGSSGRHRDRKRSRDR
DRKKRSRSRSRGKRHRSRSRDRKRKSRSKERTERKPKKAYKYWDVPPIGYEHVTPLQYKA
MQAAGQIPLMAATQPLNMAENAMQMPMAGSQMTRQARRLYVGNIPFGVTEDAMMDFFNNQ
MQIAGLTQAPGQPILAVQINLDKNFAFLEFRSVDETTHALAFDGINFMNQSLKIRRPSDY
KPLPGSLDQPAIHLPGVISTVVQDSQHKMFIGGLPNYLSDDQVKELLTSFGPLRAFNLVK
DSATALSKGYAFAEFADYNLTDQAIAGLNGMALGDKKLIVQRASIGAKANPTGAIMAPVT
LQIPGMAHATGAGPATQVLCLMNMVLAEELTDDEEYEEIMEDVKDECSKLGSVVSLEIPR
PGPGLTEADGIGKIYVEFASHLDAQKAAQALGGRKFSNRVVVTSFFDPESYHHRQFS
Nucleotide sequence
Length: 1,928
>Cisavi.CG.ENS81.R16.1116447-1122123.11745.t
GACGCACAGTGTAGGTTATAAATAGACTTAACAAATCAGGACTAAAAACAATAACAATGG
CTAACATGAAACAAGAATACCCTGGTCATATGATGCAACAGGAAGGGGGGTATTACAATA
ACGGGGACGGTCAGTTCGGTCCCCCGGAGCCAGAGATGAAATCCCGGGAAGAGAAAAAGG
ATCGGGATCGTGGGAGTTCTGGGAGGCACAGAGACAGAAAGAGGAGTAGGGATCGAGATC
GAAAGAAGAGAAGCAGAAGTAGGAGCAGAGGAAAAAGGCACCGTTCACGGAGTCGCGATC
GCAAGAGGAAGTCTCGCAGCAAAGAGCGCACCGAGCGCAAACCAAAGAAAGCGTACAAGT
ATTGGGACGTGCCGCCCATCGGATACGAGCACGTTACCCCTTTGCAATACAAAGCCATGC
AAGCCGCTGGCCAAATTCCGTTGATGGCCGCTACTCAACCACTTAACATGGCTGAAAATG
CAATGCAGATGCCGATGGCTGGAAGTCAAATGACGCGTCAAGCTCGCCGCTTATATGTCG
GCAACATCCCATTCGGGGTGACAGAAGATGCGATGATGGATTTCTTCAACAACCAGATGC
AAATCGCTGGCCTCACACAAGCCCCTGGTCAACCTATCCTTGCTGTGCAAATCAACTTGG
ATAAGAATTTCGCGTTCTTGGAGTTCAGATCGGTCGACGAAACAACACATGCTCTCGCGT
TTGATGGGATCAATTTCATGAATCAGTCGTTGAAGATTCGCCGTCCAAGCGATTACAAAC
CACTGCCTGGATCGTTGGACCAGCCTGCGATCCACTTGCCCGGTGTGATATCCACCGTGG
TACAAGATTCTCAGCATAAGATGTTCATTGGTGGATTGCCCAACTACCTTTCTGACGACC
AAGTGAAAGAGCTTTTGACGTCATTTGGGCCACTTCGTGCGTTCAACTTGGTCAAGGACA
GCGCAACTGCCCTTTCAAAGGGCTACGCGTTCGCCGAGTTTGCCGATTACAATCTGACGG
ACCAGGCTATAGCAGGGCTCAATGGAATGGCGCTTGGCGATAAGAAGCTGATTGTGCAAC
GTGCCAGTATTGGTGCTAAAGCCAATCCAACCGGAGCGATCATGGCACCAGTTACTCTAC
AGATACCCGGCATGGCTCACGCCACTGGTGCAGGACCAGCCACACAAGTCCTCTGCCTGA
TGAACATGGTGTTGGCTGAAGAGTTGACTGATGATGAGGAATATGAGGAGATCATGGAAG
ATGTCAAGGATGAATGTTCGAAACTTGGATCCGTCGTAAGCCTCGAGATCCCTCGTCCCG
GACCGGGGCTCACAGAAGCAGACGGCATCGGCAAGATCTACGTGGAGTTCGCGAGTCACC
TCGACGCTCAAAAGGCGGCGCAGGCATTGGGCGGCCGCAAGTTCTCAAACCGTGTCGTCG
TCACGTCGTTTTTCGACCCGGAGAGCTACCATCACCGCCAATTCAGCTAAACGGATTTTT
CGTAGTTTCTTTTCTCGATTGACGAGTCTGTATTATCGTTTTGAGTCTGTCTGGTAGAAG
TTTTCTGCGCCGTCTGTAGAACTGTTCAACCAACAACCAATTTAAATTGTCTCGAAAAAT
TAGTGGTTTTATTTTCGACGTTAAAAACTGCCGTTTCACCAACTGTGTTTGAAGTGAATA
AAATCATGATCACCATAAACAAGCATAGATTAAAAGTAAGAAGTACATTTTTGTCTCCTG
TATTCCAAACCTGCATGATACGGTTTTAATAGTGATTGATCTGATAATATAAAGTATGTA
CTCTCTGGTATAATGTAATTAAACTTCAGTTTTTAACGATTTTTGTCAGCTCTTTGTGAA
ACTTGGCAAGGCATTTTTAGGAGCACGTGCGAAAACGCACTGCAAAATAAACCATTGTTT
TCACAAAA
| TIGRFAM |
U2AF_lg (IPR006529) - T[82-476] 6.6E-143 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[157-241] 1.13E-18 - T[267-355] 2.38E-26 - T[384-471] 2.38E-26 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[157-239] 13.072 - T[267-345] 15.903 - T[383-468] 9.61 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[157-242] 7.7E-59 - T[243-246] 7.7E-59 - T[267-318] 7.7E-59 - T[319-340] 7.7E-59 - T[373-477] 1.0E-30 |
| SMART |
RRM_dom (IPR000504) - T[158-235] 3.8E-11 - T[268-341] 1.3E-15 - T[384-464] 0.41 |
| Pfam |
RRM_dom (IPR000504) - T[159-232] 1.4E-6 - T[270-338] 1.5E-14 - T[401-461] 1.3E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| U2AF2_HUMAN | 68.939 % | 529 | 0 |