Login
Help

Submit your Data

  1. Transcript 'KH2012:KH.C2.292.v2....'
  2. Transcript 'KH2012:KH.C4.399.v1....'
  3. Transcript 'Moocul.CG.ELv1_2.S59...'
  4. Region 'REG00000681'
  5. Transcript 'Cisavi.CG.ENS81.R16....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.1116447-1122123.11746.t

Possible name(s)

PABPC3; PUF60; U2AF2

Location

R16 [1,116,598 / 1,121,871]

Sequences

Amino acid sequence

Length: 462

>Cisavi.CG.ENS81.R16.1116447-1122123.11746.p
EMKSREEKKDRDRGSSGRHRDRKRSRDRDRKKRSRSRSRGKRHRSRSRDRKRKSRSKERT
ERKPKKAYKYWDVPPIGYEHVTPLQYKAMQAAGQIPLMAATQPLNMAENAMQVCVLHTVP
SIYYFSNPIMPMAGSQMTRQARRLYVGNIPFGVTEDAMMDFFNNQMQIAGLTQAPGQPIL
AVQINLDKNFAFLEFRSVDETTHALAFDGINFMNQSLKIRRPSDYKPLPGSLDQPAIHLP
GVISTVVQDSQHKMFIGGLPNYLSDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAEF
ADYNLTDQAIAGLNGMALGDKKLIVQRASIGAKANPTGAIMAPVTLQIPGMAHATGAGPA
TQVLCLMNMVLAEELTDDEEYEEIMEDVKDECSKLGSVVSLEIPRPGPGLTEADGIGKIY
VEFASHLDAQKAAQALGGRKFSNRVVVTSFFDPESYHHRQFS

Nucleotide sequence

Length: 1,575

>Cisavi.CG.ENS81.R16.1116447-1122123.11746.t
GAGATGAAATCCCGGGAAGAGAAAAAGGATCGGGATCGTGGGAGTTCTGGGAGGCACAGA
GACAGAAAGAGGAGTAGGGATCGAGATCGAAAGAAGAGAAGCAGAAGTAGGAGCAGAGGA
AAAAGGCACCGTTCACGGAGTCGCGATCGCAAGAGGAAGTCTCGCAGCAAAGAGCGCACC
GAGCGCAAACCAAAGAAAGCGTACAAGTATTGGGACGTGCCGCCCATCGGATACGAGCAC
GTTACCCCTTTGCAATACAAAGCCATGCAAGCCGCTGGCCAAATTCCGTTGATGGCCGCT
ACTCAACCACTTAACATGGCTGAAAATGCAATGCAGGTATGTGTTTTGCATACAGTACCT
TCCATTTATTACTTTTCTAATCCAATAATGCCGATGGCTGGAAGTCAAATGACGCGTCAA
GCTCGCCGCTTATATGTCGGCAACATCCCATTCGGGGTGACAGAAGATGCGATGATGGAT
TTCTTCAACAACCAGATGCAAATCGCTGGCCTCACACAAGCCCCTGGTCAACCTATCCTT
GCTGTGCAAATCAACTTGGATAAGAATTTCGCGTTCTTGGAGTTCAGATCGGTCGACGAA
ACAACACATGCTCTCGCGTTTGATGGGATCAATTTCATGAATCAGTCGTTGAAGATTCGC
CGTCCAAGCGATTACAAACCACTGCCTGGATCGTTGGACCAGCCTGCGATCCACTTGCCC
GGTGTGATATCCACCGTGGTACAAGATTCTCAGCATAAGATGTTCATTGGTGGATTGCCC
AACTACCTTTCTGACGACCAAGTGAAAGAGCTTTTGACGTCATTTGGGCCACTTCGTGCG
TTCAACTTGGTCAAGGACAGCGCAACTGCCCTTTCAAAGGGCTACGCGTTCGCCGAGTTT
GCCGATTACAATCTGACGGACCAGGCTATAGCAGGGCTCAATGGAATGGCGCTTGGCGAT
AAGAAGCTGATTGTGCAACGTGCCAGTATTGGTGCTAAAGCCAATCCAACCGGAGCGATC
ATGGCACCAGTTACTCTACAGATACCCGGCATGGCTCACGCCACTGGTGCAGGACCAGCC
ACACAAGTCCTCTGCCTGATGAACATGGTGTTGGCTGAAGAGTTGACTGATGATGAGGAA
TATGAGGAGATCATGGAAGATGTCAAGGATGAATGTTCGAAACTTGGATCCGTCGTAAGC
CTCGAGATCCCTCGTCCCGGACCGGGGCTCACAGAAGCAGACGGCATCGGCAAGATCTAC
GTGGAGTTCGCGAGTCACCTCGACGCTCAAAAGGCGGCGCAGGCATTGGGCGGCCGCAAG
TTCTCAAACCGTGTCGTCGTCACGTCGTTTTTCGACCCGGAGAGCTACCATCACCGCCAA
TTCAGCTAAACGGATTTTTCGTAGTTTCTTTTCTCGATTGACGAGTCTGTATTATCGTTT
TGAGTCTGTCTGGTAGAAGTTTTCTGCGCCGTCTGTAGAACTGTTCAACCAACAACCAAT
TTAAATTGTCTCGAAAAATTAGTGGTTTTATTTTCGACGTTAAAAACTGCCGTTTCACCA
ACTGTGTTTGAAGTG

InterProScan

Pfam
Tra (IPR010519) - T[8-90] 8.1E-7
TIGRFAM
U2AF_lg (IPR006529) - T[50-461] 1.1E-143
ProSiteProfiles
RRM_dom (IPR000504) - T[142-224] 13.072 - T[252-330] 15.903 - T[368-453] 9.61
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[142-227] 7.2E-59 - T[228-231] 7.2E-59 - T[252-303] 7.2E-59 - T[304-325] 7.2E-59 - T[358-462] 9.5E-31
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[142-226] 1.07E-18 - T[252-340] 2.17E-26 - T[369-456] 2.17E-26
SMART
RRM_dom (IPR000504) - T[143-220] 3.8E-11 - T[253-326] 1.3E-15 - T[369-449] 0.41
Pfam
RRM_dom (IPR000504) - T[144-217] 1.3E-6 - T[255-323] 1.5E-14 - T[386-446] 1.2E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
U2AF2_HUMAN 66.829 % 520 0





By clicking "SEND", you accept the terms of our Privacy Policy.