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  1. Transcript 'Boschl.CG.Botznik201...'
  2. Clone 'cicl053c13'
  3. Transcript 'KH2012:KH.C3.394.v7....'
  4. EST 'FF727052.1'
  5. Transcript 'Cisavi.CG.ENS81.R16....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.1116447-1122123.11747.t

Possible name(s)

PABPC3; PUF60; U2AF2

Location

R16 [1,116,601 / 1,122,063]

Sequences

Amino acid sequence

Length: 456

>Cisavi.CG.ENS81.R16.1116447-1122123.11747.p
MKSREEKKDRDRGSSGRHRDRKRSRDRDRKKRSRSRSRGKRDNSTTDPFSQNRHRSRSRD
RKRKSRSKERTERKPKKAYKYWDVPPIGYEHVTPLQYKAMQAAGQIPLMAATQPLNMAEN
AMQMPMAGSQMTRQARRLYVGNIPFGVTEDAMMDFFNNQMQIAGLTQAPGQPILAVQINL
DKNFAFLEFRSVDETTHALAFDGINFMNQSLKIRRPSDYKPLPGSLDQPAIHLPGVISTV
VQDSQHKMFIGGLPNYLSDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAEFADYNLT
DQAIAGLNGMALGDKKLIVQRASIGAKANPTGAIMAPVTLQIPGMAHATGAGPATQVLCL
MNMVLAEELTDDEEYEEIMEDVKDECSKLGSVVSLEIPRPGPGLTEADGIGKIYVEFASH
LDAQKAAQALGGRKFSNRVVVTSFFDPESYHHRQFS

Nucleotide sequence

Length: 1,749

>Cisavi.CG.ENS81.R16.1116447-1122123.11747.t
ATGAAATCCCGGGAAGAGAAAAAGGATCGGGATCGTGGGAGTTCTGGGAGGCACAGAGAC
AGAAAGAGGAGTAGGGATCGAGATCGAAAGAAGAGAAGCAGAAGTAGGAGCAGAGGAAAA
AGAGACAATTCTACTACTGACCCTTTTTCCCAAAACAGGCACCGTTCACGGAGTCGCGAT
CGCAAGAGGAAGTCTCGCAGCAAAGAGCGCACCGAGCGCAAACCAAAGAAAGCGTACAAG
TATTGGGACGTGCCGCCCATCGGATACGAGCACGTTACCCCTTTGCAATACAAAGCCATG
CAAGCCGCTGGCCAAATTCCGTTGATGGCCGCTACTCAACCACTTAACATGGCTGAAAAT
GCAATGCAGATGCCGATGGCTGGAAGTCAAATGACGCGTCAAGCTCGCCGCTTATATGTC
GGCAACATCCCATTCGGGGTGACAGAAGATGCGATGATGGATTTCTTCAACAACCAGATG
CAAATCGCTGGCCTCACACAAGCCCCTGGTCAACCTATCCTTGCTGTGCAAATCAACTTG
GATAAGAATTTCGCGTTCTTGGAGTTCAGATCGGTCGACGAAACAACACATGCTCTCGCG
TTTGATGGGATCAATTTCATGAATCAGTCGTTGAAGATTCGCCGTCCAAGCGATTACAAA
CCACTGCCTGGATCGTTGGACCAGCCTGCGATCCACTTGCCCGGTGTGATATCCACCGTG
GTACAAGATTCTCAGCATAAGATGTTCATTGGTGGATTGCCCAACTACCTTTCTGACGAC
CAAGTGAAAGAGCTTTTGACGTCATTTGGGCCACTTCGTGCGTTCAACTTGGTCAAGGAC
AGCGCAACTGCCCTTTCAAAGGGCTACGCGTTCGCCGAGTTTGCCGATTACAATCTGACG
GACCAGGCTATAGCAGGGCTCAATGGAATGGCGCTTGGCGATAAGAAGCTGATTGTGCAA
CGTGCCAGTATTGGTGCTAAAGCCAATCCAACCGGAGCGATCATGGCACCAGTTACTCTA
CAGATACCCGGCATGGCTCACGCCACTGGTGCAGGACCAGCCACACAAGTCCTCTGCCTG
ATGAACATGGTGTTGGCTGAAGAGTTGACTGATGATGAGGAATATGAGGAGATCATGGAA
GATGTCAAGGATGAATGTTCGAAACTTGGATCCGTCGTAAGCCTCGAGATCCCTCGTCCC
GGACCGGGGCTCACAGAAGCAGACGGCATCGGCAAGATCTACGTGGAGTTCGCGAGTCAC
CTCGACGCTCAAAAGGCGGCGCAGGCATTGGGCGGCCGCAAGTTCTCAAACCGTGTCGTC
GTCACGTCGTTTTTCGACCCGGAGAGCTACCATCACCGCCAATTCAGCTAAACGGATTTT
TCGTAGTTTCTTTTCTCGATTGACGAGTCTGTATTATCGTTTTGAGTCTGTCTGGTAGAA
GTTTTCTGCGCCGTCTGTAGAACTGTTCAACCAACAACCAATTTAAATTGTCTCGAAAAA
TTAGTGGTTTTATTTTCGACGTTAAAAACTGCCGTTTCACCAACTGTGTTTGAAGTGAAT
AAAATCATGATCACCATAAACAAGCATAGATTAAAAGTAAGAAGTACATTTTTGTCTCCT
GTATTCCAAACCTGCATGATACGGTTTTAATAGTGATTGATCTGATAATATAAAGTATGT
ACTCTCTGGTATAATGTAATTAAACTTCAGTTTTTAACGATTTTTGTCAGCTCTTTGTGA
AACTTGGCA

InterProScan

TIGRFAM
U2AF_lg (IPR006529) - T[2-455] 2.7E-146
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[136-220] 1.05E-18 - T[246-334] 2.11E-26 - T[363-450] 2.11E-26
ProSiteProfiles
RRM_dom (IPR000504) - T[136-218] 13.072 - T[246-324] 15.903 - T[362-447] 9.61
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[136-221] 7.0E-59 - T[222-225] 7.0E-59 - T[246-297] 7.0E-59 - T[298-319] 7.0E-59 - T[352-456] 9.3E-31
SMART
RRM_dom (IPR000504) - T[137-214] 3.8E-11 - T[247-320] 1.3E-15 - T[363-443] 0.41
Pfam
RRM_dom (IPR000504) - T[138-211] 1.3E-6 - T[249-317] 1.4E-14 - T[380-440] 1.2E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
U2AF2_HUMAN 68.939 % 531 0





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