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TRANSCRIPT CARD

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  1. Clone 'cima860450' > 
  2. Transcript 'Cisavi.CG.ENS81.R16....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.1473434-1481523.12530.t

Possible name(s)

RPS27A; UBB; UBC

Gene model

Cisavi.CG.ENS81.R16.1473434-1481523

Location

R16 [1,473,433 / 1,477,757]

Sequences

Amino acid sequence

Length: 305

>Cisavi.CG.ENS81.R16.1473434-1481523.12530.p
MQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKT
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGN

Nucleotide sequence

Length: 1,377

>Cisavi.CG.ENS81.R16.1473434-1481523.12530.t
AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCG
CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG
AGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGA
GGCATCCGACTCTATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCC
TGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGA
CTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCA
AATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAAGCATCCGACTC
CATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCTGATCAGCAACG
TCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCA
GAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAA
AACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGT
TAAGACAAAGATCCAAGACAAAGAAGGAATTCCTCCCGATCAGCAACGTCTCATCTTCGC
TGGAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCAC
TCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGG
AAAGACCATCACCCTAGAGGTTGAAGCATCCGACTCTATCGACAATGTTAAGTCAAAGAT
CCAAGACAAAGAAGGAATCCCTCCGGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCT
TGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGT
CCTTCGTCTTAGAGGAGGAAACTAAAACTGCAAACAACCTTGCAACTGTCTATATTATAT
TAACACTGCTTAAATAAAAATAAAATTAGTATATGTAAAGTTAATAGTCTCTTGTAGTTA
TGGTGAAAAACTAACGTTCGTAAACATTTTTTAGTAGTTTTTCTTGCCAACTGCAGAAGG
ATTTTAATCACTGCATGGTGTTAAAATATGAACTTTTAAATTAAATAAAATTTGTCCAAA
AATTGTTAGTTATTGTTTTTCATTGTAAACCAGCATTATAAGTCAAGTCGAGTCTTTGCC
CGTTAAAATTGGTACGGTCGTTTGGTCTAGCGGTTAAGTGCGTCGCCTTTCAATCGA

InterProScan

SUPERFAMILY
Ubiquitin-like_domsf (IPR029071) - T[1-76] 1.1E-32 - T[76-152] 4.44E-33 - T[152-228] 2.75E-33 - T[228-304] 4.02E-33
ProSiteProfiles
Ubiquitin_dom (IPR000626) - T[1-76] 30.169 - T[77-152] 30.169 - T[153-228] 30.125 - T[229-304] 30.169
SMART
Ubiquitin_dom (IPR000626) - T[1-72] 4.9E-34 - T[77-148] 4.9E-34 - T[153-224] 5.4E-34 - T[229-300] 4.9E-34
Pfam
Ubiquitin_dom (IPR000626) - T[3-74] 2.9E-32 - T[79-150] 2.9E-32 - T[155-226] 4.0E-32 - T[231-302] 2.9E-32
PRINTS
Ubiquitin (IPR019956) - T[11-31] 2.7E-37 - T[32-52] 2.7E-37 - T[53-74] 2.7E-37
ProSitePatterns
Ubiquitin_CS (IPR019954) - T[27-52] . - T[103-128] . - T[179-204] . - T[255-280] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RL40_HUMAN 93.506 % 150 9.08E-46
UBB_HUMAN 94.323 % 434 6.26E-156
UBC_HUMAN 94.737 % 577 0