- Clone 'cima825049' >
- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Transcript 'Cisavi.CG.ENS81.R16....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R16.1473434-1481523.12532.t
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
R16 [1,474,212 / 1,481,510]
Amino acid sequence
Length: 343
>Cisavi.CG.ENS81.R16.1473434-1481523.12532.p
MQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKS
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEASDSIDNVKTKIQDKEGKYTK
Nucleotide sequence
Length: 1,250
>Cisavi.CG.ENS81.R16.1473434-1481523.12532.t
TTTTCGTGAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAGGCATCAGACTCCA
TCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTC
TCATCTTTGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATTCAAA
AAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAA
CCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGTTA
AGTCAAAGATCCAAGACAAAGAAGGAATTCCTCCGGATCAGCAACGTCTCATCTTCGCTG
GAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTC
TTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAA
AGACCATCACCCTTGAGGTTGAGGCATCTGACTCCATCGACAATGTTAAGTCAAAGATCC
AAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTG
AAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCC
TTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCC
TTGAGGTTGAGGCATCCGACTCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAG
GAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCA
CATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAG
GAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGG
CATCCGACTCTATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCG
ATCAGCAACGTCTTATCTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACT
ACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAA
TCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCTGACTCCA
TCGACAATGTCAAGACAAAGATCCAAGACAAAGAAGGTAAATATACCAAA
| SMART |
Ubiquitin_dom (IPR000626) - T[1-72] 4.9E-34 - T[77-148] 4.9E-34 - T[153-224] 4.9E-34 - T[229-300] 4.9E-34 |
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[1-76] 30.169 - T[77-152] 30.169 - T[153-228] 30.169 - T[229-304] 30.169 - T[305-339] 10.266 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[1-76] 1.35E-32 - T[76-152] 4.02E-33 - T[152-228] 4.02E-33 - T[227-304] 2.96E-33 - T[304-339] 3.45E-9 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[3-74] 3.5E-32 - T[79-150] 3.5E-32 - T[155-226] 3.5E-32 - T[231-302] 3.5E-32 - T[307-339] 3.4E-8 |
| PRINTS |
Ubiquitin (IPR019956) - T[11-31] 3.2E-37 - T[32-52] 3.2E-37 - T[53-74] 3.2E-37 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[27-52] . - T[103-128] . - T[179-204] . - T[255-280] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 93.506 % | 151 | 1.56E-45 |
| UBB_HUMAN | 94.323 % | 436 | 6.87E-156 |
| UBC_HUMAN | 94.1 % | 638 | 0 |