- Transcript 'Cisavi.CG.ENS81.R16....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R16.1473434-1481523.12535.t
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
R16 [1,475,240 / 1,481,125]
Amino acid sequence
Length: 415
>Cisavi.CG.ENS81.R16.1473434-1481523.12535.p
MQIFVKTLTGKTITLEVEASDSIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKS
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEG
Nucleotide sequence
Length: 1,373
>Cisavi.CG.ENS81.R16.1473434-1481523.12535.t
AGGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCG
CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG
AGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGA
GGCATCTGACTCCATCGACAATGTTAAGACAAAGATCCAAGACAAAGAAGGAATTCCTCC
GGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGA
CTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCA
AATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCTGACTC
CATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACG
TCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCA
GAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAA
AACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGT
TAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGC
TGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCAC
TCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGG
AAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCTATCGACAATGTTAAGTCAAAGAT
CCAAGACAAAGAAGGAATCCCTCCTGATCAGCAACGTCTCATCTTTGCTGGAAAACAACT
TGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGT
CCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCAC
CCTAGAGGTTGAAGCATCCGACTCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGA
AGGAATTCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCG
CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG
AGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGA
AGCATCCGACTCTATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGTA
| SMART |
Ubiquitin_dom (IPR000626) - T[1-72] 5.4E-34 - T[77-148] 4.9E-34 - T[153-224] 4.9E-34 - T[229-300] 4.9E-34 - T[305-376] 4.9E-34 |
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[1-76] 30.125 - T[77-152] 30.169 - T[153-228] 30.169 - T[229-304] 30.169 - T[305-380] 30.169 - T[381-415] 10.963 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[1-76] 1.63E-32 - T[75-152] 4.23E-33 - T[152-228] 5.5E-33 - T[228-304] 7.61E-33 - T[304-380] 7.61E-33 - T[380-415] 9.44E-9 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[3-74] 6.7E-32 - T[79-150] 4.8E-32 - T[155-226] 4.8E-32 - T[231-302] 4.8E-32 - T[307-378] 4.8E-32 - T[383-415] 4.8E-8 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[27-52] . - T[103-128] . - T[179-204] . - T[255-280] . - T[331-356] . |
| PRINTS |
Ubiquitin (IPR019956) - T[87-107] 5.4E-37 - T[108-128] 5.4E-37 - T[129-150] 5.4E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 93.506 % | 151 | 7.78E-45 |
| UBB_HUMAN | 94.323 % | 436 | 5.55E-155 |
| UBC_HUMAN | 94.217 % | 781 | 0 |