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  1. Transcript 'KH2012:KH.C9.606.v1....'
  2. Transcript 'Haaura.CG.MTP2014.S8...'
  3. Clone 'cidg810b01'
  4. Clone 'cien116029'
  5. Transcript 'Cisavi.CG.ENS81.R16....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.1473434-1481523.12535.t

Possible name(s)

RPS27A; UBB; UBC

Location

R16 [1,475,240 / 1,481,125]

Sequences

Amino acid sequence

Length: 415

>Cisavi.CG.ENS81.R16.1473434-1481523.12535.p
MQIFVKTLTGKTITLEVEASDSIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKS
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEG

Nucleotide sequence

Length: 1,373

>Cisavi.CG.ENS81.R16.1473434-1481523.12535.t
AGGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCG
CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG
AGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGA
GGCATCTGACTCCATCGACAATGTTAAGACAAAGATCCAAGACAAAGAAGGAATTCCTCC
GGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGA
CTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCA
AATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCTGACTC
CATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACG
TCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCA
GAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAA
AACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGT
TAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGC
TGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCAC
TCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGG
AAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCTATCGACAATGTTAAGTCAAAGAT
CCAAGACAAAGAAGGAATCCCTCCTGATCAGCAACGTCTCATCTTTGCTGGAAAACAACT
TGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGT
CCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCAC
CCTAGAGGTTGAAGCATCCGACTCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGA
AGGAATTCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCG
CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG
AGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGA
AGCATCCGACTCTATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGTA

InterProScan

SMART
Ubiquitin_dom (IPR000626) - T[1-72] 5.4E-34 - T[77-148] 4.9E-34 - T[153-224] 4.9E-34 - T[229-300] 4.9E-34 - T[305-376] 4.9E-34
ProSiteProfiles
Ubiquitin_dom (IPR000626) - T[1-76] 30.125 - T[77-152] 30.169 - T[153-228] 30.169 - T[229-304] 30.169 - T[305-380] 30.169 - T[381-415] 10.963
SUPERFAMILY
Ubiquitin-like_domsf (IPR029071) - T[1-76] 1.63E-32 - T[75-152] 4.23E-33 - T[152-228] 5.5E-33 - T[228-304] 7.61E-33 - T[304-380] 7.61E-33 - T[380-415] 9.44E-9
Pfam
Ubiquitin_dom (IPR000626) - T[3-74] 6.7E-32 - T[79-150] 4.8E-32 - T[155-226] 4.8E-32 - T[231-302] 4.8E-32 - T[307-378] 4.8E-32 - T[383-415] 4.8E-8
ProSitePatterns
Ubiquitin_CS (IPR019954) - T[27-52] . - T[103-128] . - T[179-204] . - T[255-280] . - T[331-356] .
PRINTS
Ubiquitin (IPR019956) - T[87-107] 5.4E-37 - T[108-128] 5.4E-37 - T[129-150] 5.4E-37

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RL40_HUMAN 93.506 % 151 7.78E-45
UBB_HUMAN 94.323 % 436 5.55E-155
UBC_HUMAN 94.217 % 781 0





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