- Transcript 'Haaura.CG.MTP2014.S8...' >
- Transcript 'Cisavi.CG.ENS81.R16....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R16.1473434-1481523.12536.t
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
R16 [1,475,343 / 1,481,125]
Amino acid sequence
Length: 727
>Cisavi.CG.ENS81.R16.1473434-1481523.12536.p
PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEAS
DSIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF
VKTLTGKTITLEVEASDSIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
STLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGK
QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQD
KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE
VEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKT
KIQDKEGTRIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
KTITLEVEASDSIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
LRLRGGM
Nucleotide sequence
Length: 2,188
>Cisavi.CG.ENS81.R16.1473434-1481523.12536.t
AGGAATCCCTCCGGATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCG
CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG
AGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGA
GGCATCTGACTCCATCGACAATGTTAAGACAAAGATCCAAGACAAAGAAGGAATCCCTCC
CGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGA
CTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTACTTCGTCTTAGAGGAGGAATGCA
AATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTC
CATCGACAATGTTAAGACAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACG
TCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATTCA
AAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAA
AACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGT
TAAGTCAAAGATCCAAGACAAAGAAGGAATTCCTCCGGATCAGCAACGTCTCATCTTCGC
TGGAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCAC
TCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGG
AAAGACCATCACCCTTGAGGTTGAGGCATCTGACTCCATCGACAATGTTAAGTCAAAGAT
CCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCT
TGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGT
CCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCAC
CCTTGAGGTTGAGGCATCCGACTCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGA
AGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCG
CACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAG
AGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGA
GGCATCCGACTCTATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCC
TGATCAGCAACGTCTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGA
CTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCA
AATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAAGCATCCGACTC
CATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACG
TCTCATCTTCGCTGGAAAGCAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCA
GAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAA
AACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAAGCATCCGACTCCATCGACAATGT
TAAGACAAAGATCCAAGACAAAGAAGGAACAAGAATCCCTCCTGATCAGCAACGTCTTAT
CTTCGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGA
GTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTT
GACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGTTAAGAC
AAAGATCCAAGACAAAGAAGGAATTCCTCCCGATCAGCAACGTCTCATCTTCGCTGGAAA
ACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCA
CTTGGTCCTTCGTCTTAGAGGAGGAATG
| SMART |
Ubiquitin_dom (IPR000626) - T[1-36] 13.0 - T[41-112] 5.4E-34 - T[117-188] 5.4E-34 - T[193-264] 4.9E-34 - T[269-340] 4.9E-34 - T[345-416] 4.9E-34 - T[421-492] 4.9E-34 - T[497-568] 4.9E-34 - T[573-646] 1.3E-31 - T[651-722] 5.4E-34 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[1-40] 3.15E-15 - T[40-116] 1.62E-32 - T[116-192] 1.58E-32 - T[192-268] 1.79E-32 - T[268-344] 1.3E-32 - T[343-420] 9.93E-33 - T[420-496] 1.3E-32 - T[496-572] 1.79E-32 - T[572-650] 6.31E-31 - T[650-726] 1.14E-32 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[1-38] 1.0E-14 - T[43-114] 1.5E-31 - T[119-190] 1.5E-31 - T[195-266] 1.1E-31 - T[271-342] 1.1E-31 - T[347-418] 1.1E-31 - T[423-494] 1.1E-31 - T[499-570] 1.1E-31 - T[575-648] 5.5E-30 - T[653-724] 1.5E-31 |
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[1-40] 18.976 - T[41-116] 30.125 - T[117-192] 30.125 - T[193-268] 30.169 - T[269-344] 30.169 - T[345-420] 30.169 - T[421-496] 30.169 - T[497-572] 30.169 - T[573-650] 28.1 - T[651-726] 30.125 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[67-92] . - T[143-168] . - T[219-244] . - T[295-320] . - T[371-396] . - T[447-472] . - T[523-548] . - T[677-702] . |
| PRINTS |
Ubiquitin (IPR019956) - T[203-223] 2.4E-36 - T[224-244] 2.4E-36 - T[245-266] 2.4E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 93.506 % | 150 | 7.44E-43 |
| UBB_HUMAN | 94.323 % | 434 | 1.32E-149 |
| UBC_HUMAN | 94.323 % | 1284 | 0 |