- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.S494.5.v1....' >
- Transcript 'Cisavi.CG.ENS81.R16....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R16.1473434-1481523.12537.t
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
R16 [1,476,365 / 1,481,523]
Amino acid sequence
Length: 614
>Cisavi.CG.ENS81.R16.1473434-1481523.12537.p
FKMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKTKIQDKEGIPPDQQR
LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNV
KTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
KTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
LRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR
TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDSIDNVKSKIQDKEGIPP
DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDS
IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVK
TLTGKTITLEVEASDSIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
LHLVLRLRGGMQIF
Nucleotide sequence
Length: 1,842
>Cisavi.CG.ENS81.R16.1473434-1481523.12537.t
TTTAAGATGCAGATTTTCGTGAAAACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAG
GCATCAGACTCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCG
GATCAGCAACGTCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACATTGAGCGAC
TACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAA
ATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCTGACTCC
ATCGACAATGTTAAGACAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGT
CTCATCTTCGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAG
AAAGAGTCCACTCTTCACTTGGTACTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAA
ACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGTT
AAGACAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCT
GGAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATTCAAAAAGAGTCCACT
CTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGA
AAGACCATCACCCTTGAGGTTGAGGCATCCGACTCCATCGACAATGTTAAGTCAAAGATC
CAAGACAAAGAAGGAATTCCTCCGGATCAGCAACGTCTCATCTTCGCTGGAAAACAACTT
GAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTC
CTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACC
CTTGAGGTTGAGGCATCTGACTCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAA
GGAATCCCTCCCGATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCGC
ACATTGAGCGACTACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGA
GGAGGAATGCAAATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAG
GCATCCGACTCCATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCC
GATCAGCAACGTCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACATTGAGCGAC
TACAACATCCAGAAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAA
ATCTTCGTCAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGGCATCCGACTCT
ATCGACAATGTTAAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCTGATCAGCAACGT
CTCATCTTTGCTGGAAAACAACTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAG
AAAGAGTCCACTCTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTCGTCAAA
ACCTTGACTGGAAAGACCATCACCCTAGAGGTTGAAGCATCCGACTCCATCGACAATGTT
AAGTCAAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAGCAACGTCTCATCTTCGCT
GGAAAGCAGCTTGAAGATGGCCGCACATTGAGCGACTACAACATCCAGAAAGAGTCCACT
CTTCACTTGGTCCTTCGTCTTAGAGGAGGAATGCAAATCTTC
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[3-78] 30.169 - T[79-154] 30.125 - T[155-230] 30.125 - T[231-306] 30.169 - T[307-382] 30.169 - T[383-458] 30.169 - T[459-534] 30.169 - T[535-610] 30.169 |
| SMART |
Ubiquitin_dom (IPR000626) - T[3-74] 4.9E-34 - T[79-150] 5.4E-34 - T[155-226] 5.4E-34 - T[231-302] 4.9E-34 - T[307-378] 4.9E-34 - T[383-454] 4.9E-34 - T[459-530] 4.9E-34 - T[535-606] 4.9E-34 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[3-78] 1.88E-32 - T[78-154] 8.67E-33 - T[154-230] 1.21E-32 - T[230-306] 1.37E-32 - T[307-382] 2.03E-32 - T[381-458] 7.61E-33 - T[458-534] 1.37E-32 - T[534-610] 7.83E-33 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[5-76] 8.5E-32 - T[81-152] 1.2E-31 - T[157-228] 1.2E-31 - T[233-304] 8.5E-32 - T[309-380] 8.5E-32 - T[385-456] 8.5E-32 - T[461-532] 8.5E-32 - T[537-608] 8.5E-32 |
| PRINTS |
Ubiquitin (IPR019956) - T[13-33] 1.5E-36 - T[34-54] 1.5E-36 - T[55-76] 1.5E-36 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[29-54] . - T[105-130] . - T[181-206] . - T[257-282] . - T[333-358] . - T[409-434] . - T[485-510] . - T[561-586] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 93.506 % | 150 | 2.79E-43 |
| UBB_HUMAN | 94.323 % | 435 | 2.18E-151 |
| UBC_HUMAN | 94.771 % | 1157 | 0 |