Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.1821000-1822269.14649.t

Possible name(s)

HIST1H2AH; HIST1H2AJ; HIST1H2AM

Gene model

Cisavi.CG.ENS81.R16.1821000-1822269

Location

R16 [1,820,999 / 1,822,269]

Sequences

Amino acid sequence

Length: 138

>Cisavi.CG.ENS81.R16.1821000-1822269.14649.p
MSGRGKGKGRQKGVKVKTRSSRAGLQFPVGRVHRLLRRGHYASRVGSGAPVYLAAVLEYL
SAEVLELAGNAARDNKKARIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK
KTHKKEPFLGECSNSLVA

Nucleotide sequence

Length: 873

>Cisavi.CG.ENS81.R16.1821000-1822269.14649.t
GTTTTGTTCTAGCGGTATAAACTATCTATCTCGCTAATATGAGTGGACGTGGAAAAGGAA
AGGGCCGACAGAAGGGGGTTAAAGTGAAGACACGGTCATCTCGTGCTGGGTTACAATTCC
CTGTCGGTCGTGTTCACCGTCTTTTACGACGAGGCCACTATGCAAGTCGCGTTGGCTCTG
GAGCTCCAGTTTACTTGGCTGCCGTTCTTGAATACTTGAGCGCCGAGGTACTTGAATTGG
CTGGAAACGCTGCACGAGACAACAAGAAAGCGAGAATCATTCCAAGACATCTTCAACTTG
CCATCCGCAACGATGAGGAGCTGAACAAACTTCTCGGAAAAGTTACCATTGCCCAGGGAG
GGGTATTGCCAAACATTCAAGCTGTTCTACTCCCAAAGAAGACCCACAAAAAAGAGCCGT
TTTTGGGAGAATGTTCGAATTCTCTTGTAGCTTAAGCACGCTCGCCACGAATGCGTCGAG
CCAGTTGGATGTCCTTGGGCATGATGGTCACTCGTTTTGCGTGAATAGCGCACAGGTTCG
TGTCTTCAAACAGACCGACCAAATATGCTTCACTTGCTTCTTGAAGCGCCATCACGGCGC
TGCTTTGGAATCGCAGATCGGTCTTGAAATCTTGAGCTATCTCGCGAACAAGTCGTTGAA
ACGGAAGCTTGCGAATGAGAAGCTCTGTGGATTTCTGATAACGTCGAATTTCTCGGAGAG
CGACGGTTCCTGGTCGGTAGCGATGTGGTTTCTTCACTCCCCCGGTAGCTGGCGCGCTCT
TCCTTGCAGCTTTGGTTGCTAGCTGCTTCCGAGGAGCTTTGCCTCCAGTTGACTTTCGTG
CAGTTTGTTTGGTTCGTGCCATGTTGACGTTTA

InterProScan

Gene3D	Histone-fold (IPR009072) - T[1-127] 6.1E-64
SMART	Histone_H2A (IPR002119) - T[5-124] 1.8E-78
SUPERFAMILY	Histone-fold (IPR009072) - T[6-124] 4.04E-45
CDD	Histone_H2A (IPR002119) - T[9-121] 1.28927E-67
PRINTS	Histone_H2A (IPR002119) - T[15-37] 2.1E-54 - T[44-59] 2.1E-54 - T[59-72] 2.1E-54 - T[73-87] 2.1E-54 - T[101-119] 2.1E-54
Pfam	Histone_H2A/H2B/H3 (IPR007125) - T[15-90] 5.0E-15
ProSitePatterns	Histone_H2A_CS (IPR032458) - T[23-29] .
Pfam	Histone_H2A_C (IPR032454) - T[93-126] 4.0E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
H2A1J_HUMAN	87.705 %	211	4.77E-72
H2A1H_HUMAN	87.705 %	211	5.94E-72
H2A1_HUMAN	87.705 %	211	6.28E-72