- Transcript 'KH2012:KH.C2.88.v1.A...' >
- Transcript 'KH2012:KH.C10.24.v1....' >
- Transcript 'KH2012:KH.C1.57.v2.A...' >
- Clone 'cien102958' >
- Transcript 'Cisavi.CG.ENS81.R16....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R16.2085720-2098955.15885.t
Possible name(s)
STRN; STRN3; STRN4
Gene model
Location
R16 [2,085,720 / 2,098,821]
Amino acid sequence
Length: 647
>Cisavi.CG.ENS81.R16.2085720-2098955.15885.p
MMDLENGDAGGNNQANEPGETKSPYSMPGILHFIQHEWSRFEMERAQWDVEKAELQARIA
FLQGERKGQENLKRDLIRRIKMLEFALKQERAKVHKLKFGTDLSVEQKHNESNGKCDFPS
TVSKTNELQTTNAHMSWRHGRQLLRQYLQEVGYSETILDVRSQRVRALLGNNYDAPKPVE
NDNQVVNGNISDEEKQSNQAIYDSVITIIYSMFQLLPSVQIVILPDFNFLNAEDNDNEDD
EDVNMQDEDVTDDGDHQRKARAKVSSLFLLLRLYESIENALGLGALAGLTVANEADPLSY
DVITEFSTMDFQIAATKESYRKTWNPKYTLRSHFDGIRAIRFLPNESAVITASEDHTMKL
WNLNKPLPSKKTQSLDVEPIYSFRGHSGAVLSLEVDADGSYCFSGGLDASVRVWSIPSVE
IDAYDTYDPAVIQKVLVGHTDAVWSLSYSSTRQQLLSASSDCSVRLWNPTSNDPLIQTYT
TEGIPTSVCFVQCDSNHAVVSHTDGKINLYDLETGQISLVLAEGDGSKYIDCSVNCVASH
PTMPITMTAHDDKHIKFFDNSSGKLIHSMVAHLDSVTSLSVDPNGLYLLSGSHDCSIRLW
NLDSKTCIQELTSHRKKFDESIYSVAFHPSATYIASAGADALAKIFV
Nucleotide sequence
Length: 2,017
>Cisavi.CG.ENS81.R16.2085720-2098955.15885.t
ACGTTAGATAAATTCAAATATATGCTCATTTGTTAGTGAATATTGACCACTGTATTTCTT
ACACGTTGTTTCAATGATGGATTTAGAAAATGGCGATGCTGGTGGGAACAACCAAGCAAA
TGAACCTGGAGAGACGAAATCCCCGTATTCAATGCCAGGAATTCTTCACTTCATCCAGCA
TGAATGGTCGAGGTTCGAGATGGAACGTGCTCAGTGGGATGTTGAGAAAGCTGAGTTACA
GGCAAGAATTGCATTTCTACAGGGAGAGCGAAAAGGCCAAGAAAATTTAAAACGAGACTT
AATACGAAGAATAAAGATGCTGGAATTTGCTTTGAAGCAAGAAAGAGCAAAAGTCCACAA
GTTAAAATTCGGAACAGATTTAAGCGTCGAACAAAAGCACAATGAATCAAATGGTAAGTG
CGATTTTCCTAGCACTGTTTCAAAAACGAATGAACTTCAAACAACCAATGCTCATATGTC
ATGGCGCCATGGGCGACAATTGCTGAGGCAATACCTACAAGAAGTGGGGTATAGTGAAAC
AATACTCGACGTACGCTCCCAGCGAGTTCGTGCTCTGCTTGGGAATAATTACGACGCTCC
AAAACCAGTGGAAAACGACAATCAGGTCGTTAATGGCAACATTTCAGATGAAGAAAAACA
ATCGAACCAGGCTATTTATGATTCAGTCATCACCATCATATATAGCATGTTCCAGTTATT
ACCATCAGTGCAAATTGTAATACTGCCGGACTTCAACTTCCTCAACGCAGAAGACAATGA
CAACGAAGATGACGAGGATGTTAACATGCAGGATGAGGATGTTACTGATGACGGGGATCA
TCAGAGGAAAGCCAGAGCAAAGGTTTCTTCTTTGTTTCTATTGTTGAGACTTTATGAATC
GATTGAAAACGCTCTCGGACTTGGAGCATTGGCTGGCCTTACTGTGGCCAATGAAGCCGA
CCCACTTTCTTACGATGTGATTACTGAATTCTCAACTATGGATTTCCAGATCGCTGCGAC
AAAGGAATCATACCGCAAAACCTGGAATCCCAAATACACTCTCCGGAGCCATTTCGACGG
GATCCGAGCGATTAGGTTCCTCCCAAACGAGTCCGCGGTGATCACAGCATCGGAGGATCA
CACGATGAAGCTCTGGAACCTCAACAAGCCGCTTCCGAGCAAGAAGACCCAGTCGCTAGA
TGTGGAGCCGATATATAGCTTCAGAGGACACTCTGGTGCAGTTCTCAGTCTTGAAGTGGA
TGCTGATGGCTCGTATTGCTTCAGTGGTGGGTTGGATGCCAGCGTTCGTGTGTGGTCCAT
ACCTAGTGTGGAAATTGATGCTTACGATACTTATGACCCAGCGGTCATCCAGAAAGTGCT
GGTCGGTCACACAGACGCAGTGTGGTCGCTCTCGTACTCCAGCACTCGTCAACAATTGTT
GTCGGCCTCGTCAGATTGCTCGGTCAGACTGTGGAATCCAACATCAAATGATCCACTTAT
TCAAACCTACACAACCGAAGGAATCCCCACATCAGTGTGCTTCGTCCAGTGTGATTCCAA
CCACGCCGTCGTATCCCACACTGATGGGAAGATCAACCTGTACGACCTGGAAACTGGACA
AATTTCCCTCGTGCTTGCTGAAGGAGATGGAAGTAAGTACATTGACTGCAGTGTCAACTG
CGTGGCAAGTCACCCCACGATGCCAATAACCATGACAGCTCATGACGACAAACACATTAA
ATTCTTTGACAACTCGTCAGGCAAATTGATCCATTCTATGGTAGCACATCTGGACTCTGT
CACCAGTTTATCTGTTGATCCTAATGGTCTTTACCTGCTTTCTGGAAGCCATGACTGTTC
GATCCGTTTATGGAACCTGGACAGCAAGACTTGTATACAAGAGCTCACTTCGCATAGGAA
AAAGTTTGATGAATCGATTTACTCGGTTGCATTTCACCCCAGCGCCACATACATAGCCAG
CGCCGGTGCCGACGCTTTAGCAAAGATTTTTGTATAG
| Pfam |
Striatin_N (IPR013258) - T[27-158] 4.2E-46 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[313-421] 3.4E-20 - T[422-527] 9.3E-21 - T[528-647] 5.2E-28 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[322-646] 3.85E-68 |
| SMART |
WD40_repeat (IPR001680) - T[323-362] 8.7E-7 - T[376-415] 1.9E-8 - T[429-468] 3.0E-8 - T[472-511] 0.79 - T[514-559] 4.7 - T[562-601] 4.4E-10 - T[604-647] 1.4E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[324-362] 1.9E-4 - T[378-415] 3.0E-5 - T[433-468] 3.2E-5 - T[563-601] 1.5E-8 - T[606-645] 0.0056 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[330-647] 43.608 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[330-364] 13.416 - T[383-416] 13.215 - T[436-477] 13.984 - T[569-610] 15.655 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[349-363] 6.0E-6 - T[455-469] 6.0E-6 - T[588-602] 6.0E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[349-363] . - T[588-602] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STRN3_HUMAN | 60.858 % | 476 | 4.13E-159 |
| STRN_HUMAN | 58.886 % | 464 | 2.53E-154 |
| STRN4_HUMAN | 52.575 % | 400 | 3.98E-130 |