- Clone 'ciem815c14' >
- Transcript 'KH2012:KH.C11.424.v4...' >
- Clone 'AHC0AAA189YG19' >
- Transcript 'Cisavi.CG.ENS81.R16....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R16.2085720-2098955.15890.t
Possible name(s)
STRN; STRN3; STRN4
Gene model
Location
R16 [2,086,226 / 2,098,821]
Amino acid sequence
Length: 666
>Cisavi.CG.ENS81.R16.2085720-2098955.15890.p
PYSMPGILHFIQHEWSRFEMERAQWDVEKAELQARIAFLQGERKGQENLKRDLIRRIKML
EFALKQERAKVHKLKFGTDLSVEQKHNESNDESKTNELQTTNAHMSWRHGRQLLRQYLQE
VGYSETILDVRSQRVRALLGNNYDAPKPVENDNQVVNGNISDEEKQSNRCVWNQLQLASC
STDGNTESIFKDFNFLNAEDNDNEDDEDVNMQDEDVTDDGDHQRKARAKDAFDEVDGFGD
EEMALAEFDFLNPTAAEPGIPEVCVCTSHTISLCQVKVQGPYNLLNVFHSESLPFTVGGT
HMGDESIENALGLGALAGLTVANEADPLSYDIAATKESYRKTWNPKYTLRSHFDGIRAIR
FLPNESAVITASEDHTMKLWNLNKPLPSKKTQSLDVEPIYSFRGHSGAVLSLEVDADGSY
CFSGGLDASVRVWSIPSVEIDAYDTYDPAVIQKVLVGHTDAVWSLSYSSTRQQLLSASSD
CSVRLWNPTSNDPLIQTYTTEGIPTSVCFVQCDSNHAVVSHTDGKINLYDLETGQISLVL
AEGDGSKYIDCSVNCVASHPTMPITMTAHDDKHIKFFDNSSGKLIHSMVAHLDSVTSLSV
DPNGLYLLSGSHDCSIRLWNLDSKTCIQELTSHRKKFDESIYSVAFHPSATYIASAGADA
LAKIFV
Nucleotide sequence
Length: 2,001
>Cisavi.CG.ENS81.R16.2085720-2098955.15890.t
CCGTATTCAATGCCAGGAATTCTTCACTTCATCCAGCATGAATGGTCGAGGTTCGAGATG
GAACGTGCTCAGTGGGATGTTGAGAAAGCTGAGTTACAGGCAAGAATTGCATTTCTACAG
GGAGAGCGAAAAGGCCAAGAAAATTTAAAACGAGACTTAATACGAAGAATAAAGATGCTG
GAATTTGCTTTGAAGCAAGAAAGAGCAAAAGTCCACAAGTTAAAATTCGGAACAGATTTA
AGCGTCGAACAAAAGCACAATGAATCAAATGATGAGTCAAAAACGAATGAACTTCAAACA
ACCAATGCTCATATGTCATGGCGCCATGGGCGACAATTGCTGAGGCAATACCTACAAGAA
GTGGGGTATAGTGAAACAATACTCGACGTACGCTCCCAGCGAGTTCGTGCTCTGCTTGGG
AATAATTACGACGCTCCAAAACCAGTGGAAAACGACAATCAGGTCGTTAATGGCAACATT
TCAGATGAAGAAAAACAATCGAACAGATGTGTTTGGAACCAGTTGCAGCTGGCCAGCTGC
TCTACGGATGGGAACACCGAGAGCATCTTCAAGGACTTCAACTTCCTCAACGCAGAAGAC
AATGACAACGAAGATGACGAGGATGTTAACATGCAGGATGAGGATGTTACTGATGACGGG
GATCATCAGAGGAAAGCCAGAGCAAAGGATGCATTTGATGAGGTGGATGGGTTTGGAGAT
GAGGAAATGGCTCTTGCTGAGTTTGATTTCCTTAATCCAACAGCCGCTGAACCTGGTATA
CCTGAAGTGTGTGTGTGTACCTCTCATACAATAAGCTTGTGTCAAGTTAAAGTTCAGGGT
CCATATAATCTCCTTAATGTTTTCCATTCAGAATCTCTCCCATTCACGGTCGGTGGAACT
CACATGGGAGATGAATCGATTGAAAACGCTCTCGGACTTGGAGCATTGGCTGGCCTTACT
GTGGCCAATGAAGCCGACCCACTTTCTTACGATATCGCTGCGACAAAGGAATCATACCGC
AAAACCTGGAATCCCAAATACACTCTCCGGAGCCATTTCGACGGGATCCGAGCGATTAGG
TTCCTCCCAAACGAGTCCGCGGTGATCACAGCATCGGAGGATCACACGATGAAGCTCTGG
AACCTCAACAAGCCGCTTCCGAGCAAGAAGACCCAGTCGCTAGATGTGGAGCCGATATAT
AGCTTCAGAGGACACTCTGGTGCAGTTCTCAGTCTTGAAGTGGATGCTGATGGCTCGTAT
TGCTTCAGTGGTGGGTTGGATGCCAGCGTTCGTGTGTGGTCCATACCTAGTGTGGAAATT
GATGCTTACGATACTTATGACCCAGCGGTCATCCAGAAAGTGCTGGTCGGTCACACAGAC
GCAGTGTGGTCGCTCTCGTACTCCAGCACTCGTCAACAATTGTTGTCGGCCTCGTCAGAT
TGCTCGGTCAGACTGTGGAATCCAACATCAAATGATCCACTTATTCAAACCTACACAACC
GAAGGAATCCCCACATCAGTGTGCTTCGTCCAGTGTGATTCCAACCACGCCGTCGTATCC
CACACTGATGGGAAGATCAACCTGTACGACCTGGAAACTGGACAAATTTCCCTCGTGCTT
GCTGAAGGAGATGGAAGTAAGTACATTGACTGCAGTGTCAACTGCGTGGCAAGTCACCCC
ACGATGCCAATAACCATGACAGCTCATGACGACAAACACATTAAATTCTTTGACAACTCG
TCAGGCAAATTGATCCATTCTATGGTAGCACATCTGGACTCTGTCACCAGTTTATCTGTT
GATCCTAATGGTCTTTACCTGCTTTCTGGAAGCCATGACTGTTCGATCCGTTTATGGAAC
CTGGACAGCAAGACTTGTATACAAGAGCTCACTTCGCATAGGAAAAAGTTTGATGAATCG
ATTTACTCGGTTGCATTTCACCCCAGCGCCACATACATAGCCAGCGCCGGTGCCGACGCT
TTAGCAAAGATTTTTGTATAG
| Pfam |
Striatin_N (IPR013258) - T[4-128] 1.2E-43 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[330-440] 2.7E-20 - T[441-546] 9.2E-21 - T[547-666] 6.1E-28 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[341-665] 4.21E-68 |
| SMART |
WD40_repeat (IPR001680) - T[342-381] 8.7E-7 - T[395-434] 1.9E-8 - T[448-487] 3.0E-8 - T[491-530] 0.79 - T[533-578] 4.7 - T[581-620] 4.4E-10 - T[623-666] 1.4E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[343-381] 1.9E-4 - T[397-434] 3.1E-5 - T[452-487] 3.3E-5 - T[582-620] 1.5E-8 - T[625-664] 0.0058 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[349-666] 43.608 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[349-383] 13.416 - T[402-435] 13.215 - T[455-496] 13.984 - T[588-629] 15.655 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[368-382] 6.4E-6 - T[474-488] 6.4E-6 - T[607-621] 6.4E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[368-382] . - T[607-621] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STRN3_HUMAN | 49.471 % | 684 | 0 |
| STRN_HUMAN | 48.374 % | 663 | 0 |
| STRN4_HUMAN | 47.721 % | 599 | 0 |