Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.4322058-4332854.19782.t

Possible name(s)

TUBA1A; TUBA3C; TUBA3D

Gene model

Cisavi.CG.ENS81.R16.4322058-4332854

Location

R16 [4,326,185 / 4,328,190]

Sequences

Amino acid sequence

Length: 450

>Cisavi.CG.ENS81.R16.4322058-4332854.19782.p
QRECISIHVGQAGVQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSIDYGKKSKLEFAIYPAPQISTA
VVEPYNSILTTHTTLEHSDCAFMVDNEAVYDICRRNLDIERPTYTNLNRLMGQIVSSITA
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPAN
QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
TVVPGGDLAKVQRAVCMLSNTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
REDLAALEKDYEEVGVDSVEGEGEEEGEEY

Nucleotide sequence

Length: 1,472

>Cisavi.CG.ENS81.R16.4322058-4332854.19782.t
CAGCGAGAATGTATCTCTATCCACGTCGGTCAAGCCGGAGTCCAGATTGGTAATGCCTGC
TGGGAACTGTTCTGTCTAGAACACGGCATCCAACCCGATGGTCAGATGCCAAGTGACAAG
ACCATTGGAGGAGGGGACGACTCCTTCAACACCTTCTTTAGCGAGACTGGAGCTGGAAAG
CACGTCCCAAGAGCCGTTTTCGTCGATCTTGAACCAACTGTTGTCGATGAGGTCCGAACC
GGTACTTACCGCCAACTCTTTCACCCGGAACAGTTGATTACCGGCAAAGAGGATGCCGCC
AACAACTATGCCCGTGGTCACTACACCATCGGTAAGGAAATCGTTGACCTTGTGCTCGAC
CGAATCCGAAAGTTGGCGGATCAGTGCACTGGCCTCCAAGGTTTCCTCATCTTCCACTCT
TTCGGAGGAGGAACTGGGTCCGGTTTTACCTCTCTTCTCATGGAGAGACTTTCGATAGAT
TACGGCAAAAAATCTAAATTGGAGTTCGCCATTTACCCAGCTCCTCAGATCTCTACCGCT
GTTGTTGAGCCATACAACTCCATCCTAACCACTCACACCACCCTCGAGCACTCCGACTGT
GCTTTCATGGTCGACAACGAGGCCGTCTACGACATCTGCCGACGAAACTTGGACATTGAG
CGCCCAACTTACACCAACTTGAACAGGTTGATGGGACAAATCGTGTCCTCCATCACCGCT
TCGTTGAGATTCGATGGTGCCCTTAACGTCGATTTAACAGAGTTTCAGACGAACTTGGTG
CCATACCCACGTATTCATTTTCCTCTTGCTACCTACGCCCCTGTGATCTCGGCCGAGAAG
GCTTACCACGAGCAACTCTCCGTTTCCGAGATCACCAACGCTTGCTTCGAGCCAGCCAAC
CAGATGGTGAAATGCGACCCACGTCACGGAAAATACATGGCATGCTGCATGCTGTACCGT
GGTGATGTTGTGCCAAAAGATGTCAATGCCGCCATTGCAACCATCAAGACCAAGAGAACC
ATCCAATTCGTCGACTGGTGCCCAACTGGTTTCAAGGTCGGTATCAACTACCAACCACCA
ACTGTTGTACCAGGTGGTGACTTGGCCAAGGTTCAACGCGCCGTTTGCATGTTGAGCAAC
ACCGCCATCGCTGAGGCTTGGGCTCGTCTTGACCACAAGTTTGACTTGATGTACGCCAAG
CGAGCTTTCGTGCATTGGTACGTCGGTGAGGGTATGGAAGAGGGAGAATTCTCCGAGGCC
CGTGAGGATTTGGCCGCCCTTGAGAAGGATTACGAAGAGGTTGGAGTCGACTCCGTTGAG
GGCGAGGGAGAAGAAGAAGGAGAGGAATATTAAACTCCTCTTTAATTACTCCCCATTAAA
TCAATGTCTGACAACATCTTCATTTACTTGGTGTTTTCTTCTTGCTGTTTTATTTGTGCT
ACATTTCATTGAACGATAAAACACTCGAAATA

InterProScan

Gene3D	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-268] 4.5E-130
PANTHER	Tubulin (IPR000217) - T[2-446] 0.0
SUPERFAMILY	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[2-244] 3.4E-99
Pfam	Tubulin_FtsZ_GTPase (IPR003008) - T[3-213] 1.0E-67
PRINTS	Tubulin (IPR000217) - T[10-30] 2.4E-89 - T[53-72] 2.4E-89 - T[95-106] 2.4E-89 - T[108-132] 2.4E-89 - T[134-152] 2.4E-89 - T[153-174] 2.4E-89 - T[178-191] 2.4E-89 - T[192-212] 2.4E-89 - T[379-407] 2.4E-89
PRINTS	Alpha_tubulin (IPR002452) - T[18-33] 1.3E-109 - T[45-58] 1.3E-109 - T[88-101] 1.3E-109 - T[120-128] 1.3E-109 - T[148-160] 1.3E-109 - T[161-172] 1.3E-109 - T[214-226] 1.3E-109 - T[274-289] 1.3E-109 - T[321-342] 1.3E-109 - T[347-360] 1.3E-109 - T[360-379] 1.3E-109 - T[421-437] 1.3E-109
SMART	Tubulin_FtsZ_GTPase (IPR003008) - T[49-246] 4.1E-80
ProSitePatterns	Tubulin_CS (IPR017975) - T[142-148] .
SUPERFAMILY	Tub_FtsZ_C (IPR008280) - T[246-436] 1.34E-83
SMART	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[248-392] 1.8E-57
Pfam	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[263-390] 2.0E-48
Gene3D	Tubulin/FtsZ_C_sf (IPR037103) - T[269-382] 2.1E-66
Gene3D	Tubulin_C (IPR023123) - T[383-449] 1.4E-35

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score
TBA1A_HUMAN	97.111 %	925
TBA1B_HUMAN	96.667 %	922
TBA3C_HUMAN	97.333 %	915