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TRANSCRIPT CARD

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  1. Region 'REG00001305' > 
  2. Transcript 'KH2012:KH.S654.3.v1....' > 
  3. Region 'REG00001293' > 
  4. Transcript 'Cisavi.CG.ENS81.R16....' > 
  5. Transcript 'Cisavi.CG.ENS81.R16....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.5041500-5055627.20057.t

Possible name(s)

TBX2; TBX3; TBX6

Gene model

Cisavi.CG.ENS81.R16.5041500-5055627

Location

R16 [5,041,499 / 5,055,627]

Sequences

Amino acid sequence

Length: 251

>Cisavi.CG.ENS81.R16.5041500-5055627.20057.p
MNIENSNHHEMSSRYGPQVHLHDVQLWDSFSAAQTEMIITKTGRRMFPGYRVKMSGMDPN
AQYCVLMDISSVDENRYKFQHGEWVIAGSGEPHIPQRYYLHPNSPCTGQQWMKDIVSFHK
VKLTNSCGNFGDGKFLVHSMHRYQPRVHIVRTDDVNTLHLQPMSTFAFPQTFFTTVTAYQ
NGKITKLKISNNPYARGFREDGAKTMKAKTSLASFTRPVSITHKRRCSPNTTSPNSTKRV
KLDYAPAVYVH

Nucleotide sequence

Length: 790

>Cisavi.CG.ENS81.R16.5041500-5055627.20057.t
AAGCAACGAAGATTCTAAAACATTGAAAGAAGAGGATGAACATTGAAAATTCAAACCATC
ACGAGATGAGCTCACGATACGGACCGCAAGTTCATCTTCACGATGTTCAGTTATGGGACA
GTTTCTCAGCTGCTCAGACTGAAATGATTATTACTAAAACCGGAAGGCGAATGTTCCCTG
GTTACCGAGTTAAAATGTCCGGGATGGACCCAAACGCTCAGTATTGCGTATTGATGGACA
TTTCGAGTGTGGATGAAAACAGATACAAGTTTCAACACGGGGAGTGGGTGATAGCTGGTA
GTGGAGAACCACATATCCCACAAAGATATTATTTGCATCCGAACTCACCTTGTACCGGAC
AACAATGGATGAAAGATATCGTTTCTTTCCACAAAGTTAAATTAACCAACTCTTGTGGGA
ATTTTGGAGACGGAAAGTTCCTCGTACATTCCATGCATCGATATCAACCTCGTGTCCACA
TTGTTCGAACTGATGACGTCAATACGTTACATCTTCAGCCGATGTCAACTTTCGCTTTCC
CACAAACTTTCTTCACAACGGTCACCGCATACCAGAACGGAAAGATCACCAAGTTAAAGA
TATCCAACAACCCTTACGCCCGAGGCTTCCGAGAAGACGGAGCGAAGACTATGAAAGCGA
AAACGTCACTTGCGTCATTTACTCGACCTGTATCAATCACCCACAAACGAAGATGCTCTC
CAAACACCACTTCTCCGAATTCCACAAAACGAGTGAAACTTGATTACGCACCAGCAGTGT
ACGTCCACCA

InterProScan

PANTHER
TF_T-box (IPR001699) - T[7-217] 6.9E-122
Gene3D
T-box_sf (IPR036960) - T[14-206] 2.1E-80
SMART
TF_T-box (IPR001699) - T[16-205] 3.3E-106
CDD
TF_T-box (IPR001699) - T[16-202] 3.97061E-108
SUPERFAMILY
p53-like_TF_DNA-bd (IPR008967) - T[17-200] 2.73E-72
Pfam
TF_T-box (IPR001699) - T[19-200] 7.4E-74
ProSiteProfiles
TF_T-box (IPR001699) - T[21-200] 68.988
ProSitePatterns
TF_T-box_CS (IPR018186) - T[26-45] . - T[100-118] .
PRINTS
TF_T-box (IPR001699) - T[34-58] 6.8E-40 - T[99-112] 6.8E-40 - T[116-125] 6.8E-40 - T[136-150] 6.8E-40 - T[171-184] 6.8E-40 - T[192-200] 6.8E-40
PRINTS
TF_Brachyury (IPR002070) - T[79-99] 8.4E-6 - T[141-158] 8.4E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TBX6_HUMAN 51.337 % 212 1.34E-66
TBX2_HUMAN 48.148 % 221 1.32E-67
TBX3_HUMAN 48.529 % 218 2.99E-66