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TRANSCRIPT CARD

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  1. Region 'REG00001296' > 
  2. Transcript 'Cisavi.CG.ENS81.R16....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.5041500-5055627.20058.t

Possible name(s)

TBX2; TBX3; TBX6

Gene model

Cisavi.CG.ENS81.R16.5041500-5055627

Location

R16 [5,045,368 / 5,055,627]

Sequences

Amino acid sequence

Length: 206

>Cisavi.CG.ENS81.R16.5041500-5055627.20058.p
MFPGYRVKMSGMDPNAQYCVLMDISSVDENRYKFQHGEWVIAGSGEPHIPQRYYLHPNSP
CTGQQWMKDIVSFHKVKLTNSCGNFGDGKFLVHSMHRYQPRVHIVRTDDVNTLHLQPMST
FAFPQTFFTTVTAYQNGKITKLKISNNPYARGFREDGAKTMKAKTSLASFTRPVSITHKR
RCSPNTTSPNSTKRVKLDYAPAVYVH

Nucleotide sequence

Length: 784

>Cisavi.CG.ENS81.R16.5041500-5055627.20058.t
ACAAAGATTCTAGAACATTGAAAGAAGAGGATGAATATTGCAAATTCAAACCATCAAGAG
ATGAGCTCACGATACGGACCGAAAGTTCATCTTCACGATGTTCAGTTATGGGACAGTTTC
TCAGCTGCTCAGACCGAAATGATTATTACTAAAACCGGAAGCGAATGTTCCCTGGTTACC
GAGTTAAAATGTCCGGGATGGACCCAAACGCTCAGTATTGCGTATTGATGGACATTTCGA
GTGTGGATGAAAACAGATACAAGTTTCAACACGGGGAGTGGGTGATAGCTGGTAGTGGAG
AACCACATATCCCACAAAGATATTATTTGCATCCGAACTCACCTTGTACCGGACAACAAT
GGATGAAAGATATCGTTTCTTTCCACAAAGTTAAATTAACCAACTCTTGTGGGAATTTTG
GAGACGGAAAGTTCCTCGTACATTCCATGCATCGATATCAACCTCGTGTCCACATTGTTC
GAACTGATGACGTCAATACGTTACATCTTCAGCCGATGTCAACTTTCGCTTTCCCACAAA
CTTTCTTCACAACGGTCACCGCATACCAGAACGGAAAGATCACCAAGTTAAAGATATCCA
ACAACCCTTACGCCCGAGGCTTCCGAGAAGACGGAGCGAAGACTATGAAAGCGAAAACGT
CACTTGCGTCATTTACTCGACCTGTATCAATCACCCACAAACGAAGATGCTCTCCAAACA
CCACTTCTCCGAATTCCACAAAACGAGTGAAACTTGATTACGCACCAGCAGTGTACGTCC
ACCA

InterProScan

SMART
TF_T-box (IPR001699) - T[1-160] 5.0E-70
ProSiteProfiles
TF_T-box (IPR001699) - T[1-155] 58.83
Pfam
TF_T-box (IPR001699) - T[1-155] 1.3E-58
Gene3D
T-box_sf (IPR036960) - T[1-161] 1.9E-65
SUPERFAMILY
p53-like_TF_DNA-bd (IPR008967) - T[1-155] 1.24E-58
PANTHER
TF_T-box (IPR001699) - T[1-172] 6.8E-102
PRINTS
TF_Brachyury (IPR002070) - T[34-54] 6.2E-6 - T[96-113] 6.2E-6
PRINTS
TF_T-box (IPR001699) - T[54-67] 3.4E-25 - T[71-80] 3.4E-25 - T[91-105] 3.4E-25 - T[126-139] 3.4E-25 - T[147-155] 3.4E-25
ProSitePatterns
TF_T-box_CS (IPR018186) - T[55-73] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TBX6_HUMAN 50.955 % 180 7.33E-55
TBX2_HUMAN 45.55 % 181 2.03E-53
TBX3_HUMAN 47.159 % 182 8.27E-54