- Transcript 'KH2012:KH.C2.354.v1....' >
- Clone 'ma324a19' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R166...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R166.467184-485667.11503.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
R166 [467,183 / 477,608]
Amino acid sequence
Length: 655
>Cisavi.CG.ENS81.R166.467184-485667.11503.p
CLSSPCYSGVECTSYDDGSFICGECPTGTQGDGITCRDIDECALVADACFHYQGTHRCQN
QFPGYSCLPCPSGYKGNVESGVGVNYARAHKQVCVLSNPCTDGENPCPENSDCIFLGKTV
HPPFTCKFQHSGLCQCVSPAFCSNVDVFASRFKLPCGARMFCRPGYASCSKCDTLVCSDD
KDSDGWADVQITCQSNNTEVTCKKDNCIKTPNSGQEDADEDGQGDACDRDDDNDNIYDEQ
DNCQFIYNPTQSDVDRDAGDMCDNCVHDRNADQHDTDGNGQGDACSIDIDGDSIENDFDN
CVYVYNFDQVDSDNDGVGDACDNCPLVHNPTQNDRDSDKVGDACDSNLDIDEDGIQNNLD
NCPYIANSNQADHDNDGIGDACDNDDDDDGIPDNRDNCRLVVNPSQLDTDGNGRGDACEG
DFDGDNIPDAKDACPLNHQISVTDFRRFDMIPLDPKGVAQTDPKWVVRHRGKELIQTKNC
DPGLAIGMDRFQAVDFSGTFFVNTGKDDDYAGFVFGYQSSSKFYVVMWKQVSQTYWESSP
TLAHGYGALQVKVVNSTTGPGEALRNALWNTGDTQDQVRTLWYDDMHRGWKDFTAYRWTL
QHRPTTGYIRVTMYEGKDLLVDSGPMYDKTFAGGRLGFYIFSQEMVFFSDMDYMC
Nucleotide sequence
Length: 2,652
>Cisavi.CG.ENS81.R166.467184-485667.11503.t
TGTCTATCGAGCCCCTGCTATAGTGGAGTTGAGTGCACCTCGTACGACGATGGAAGTTTC
ATCTGCGGAGAATGCCCCACAGGCACTCAGGGAGATGGAATCACCTGCAGAGATATTGAC
GAGTGCGCTTTGGTCGCCGACGCGTGCTTCCATTACCAAGGTACACACCGCTGCCAGAAC
CAATTCCCCGGTTACTCGTGTCTACCATGCCCGTCTGGTTACAAAGGAAACGTCGAATCT
GGTGTAGGTGTGAACTACGCTCGAGCACATAAGCAAGTGTGTGTTTTATCGAACCCTTGC
ACGGATGGGGAAAACCCCTGCCCCGAGAACTCGGACTGCATTTTCCTTGGAAAGACGGTT
CACCCGCCATTCACATGCAAGTTTCAACACTCCGGCCTTTGTCAATGCGTTTCTCCAGCT
TTTTGTTCAAATGTGGATGTTTTCGCTTCACGTTTCAAACTTCCGTGCGGCGCCAGGATG
TTTTGTCGACCTGGTTATGCATCTTGCTCTAAATGCGATACTCTGGTTTGTTCCGACGAC
AAAGACTCGGACGGTTGGGCTGACGTTCAGATTACGTGCCAGAGCAATAACACAGAGGTT
ACCTGCAAAAAGGACAACTGCATAAAAACACCCAACAGCGGCCAGGAAGACGCAGATGAA
GACGGACAGGGCGATGCTTGCGACCGCGATGATGACAACGACAACATATATGACGAACAG
GACAACTGCCAGTTCATATACAACCCCACTCAATCTGACGTTGACCGAGACGCGGGTGAC
ATGTGCGACAACTGCGTGCACGACAGGAACGCCGACCAGCACGATACTGATGGGAACGGG
CAGGGCGACGCCTGCTCCATTGACATAGATGGAGACTCAATTGAAAACGACTTTGACAAC
TGCGTCTACGTTTACAACTTCGATCAGGTTGACAGTGACAACGATGGAGTCGGGGACGCC
TGTGACAATTGTCCATTAGTTCACAACCCCACACAGAACGATCGTGATTCCGATAAAGTA
GGCGACGCTTGCGATTCGAACCTTGATATCGACGAAGACGGAATCCAGAACAACCTAGAC
AACTGTCCCTACATCGCCAATTCAAATCAAGCTGATCACGATAACGACGGTATAGGTGAT
GCCTGTGATAACGACGATGATGATGATGGTATTCCTGACAACCGTGACAACTGCAGACTT
GTGGTCAACCCAAGCCAACTAGATACTGATGGAAACGGTAGAGGCGACGCGTGTGAAGGC
GACTTCGACGGTGACAATATCCCGGACGCAAAAGACGCTTGTCCTCTTAACCATCAGATC
AGCGTCACCGATTTCCGACGGTTCGACATGATCCCGCTTGACCCCAAGGGCGTTGCACAG
ACTGATCCAAAGTGGGTCGTGAGACATAGAGGGAAGGAATTGATCCAAACCAAAAACTGC
GACCCAGGCCTGGCAATAGGCATGGACCGGTTTCAAGCGGTCGATTTCAGCGGAACATTC
TTTGTCAATACTGGAAAGGACGACGATTACGCAGGATTCGTATTCGGCTACCAGTCTTCG
AGCAAATTCTACGTTGTGATGTGGAAGCAAGTGTCACAGACCTACTGGGAGAGCAGCCCG
ACTTTAGCCCATGGATACGGTGCTTTGCAAGTCAAGGTTGTTAATTCTACCACCGGACCG
GGAGAGGCATTGAGAAACGCTTTGTGGAATACCGGCGATACACAAGACCAGGTCCGCACG
TTGTGGTATGACGATATGCACCGGGGATGGAAAGATTTCACAGCTTACCGCTGGACACTT
CAGCATAGACCAACCACGGGTTACATCAGGGTTACTATGTACGAAGGCAAGGACCTGCTG
GTGGACTCTGGGCCGATGTACGACAAAACATTCGCTGGCGGTCGGCTCGGTTTCTACATT
TTCTCACAGGAAATGGTCTTCTTTTCCGACATGGACTACATGTGCAAAGACACATAGAGG
CGCTATAACTGTGACATGACGCAAGCAAAACGTTCAAAAATGAGGACTTGGCGCCAAAGA
ATGAGCCGGTGCTGCTTCTAAACAAGATAAACTCGTTTCTTGCCTGTTTCTTGTGTTTTT
GCTTTTAATTCTATCGTAAAACTGCCATAACTAGCGAAGAATCGCTTGATGTTTTTATAC
TAGGCCAAAGCTTCTCTACAGTGGTGACCCCGACGGATTTTATTTCTCGTTTCCACTGTA
TTGTACAAGTTGTAATGATTTGTAAACCTTTAAATCGTTACGCTGCACCACACAGCACTG
CAGTTTATGTTAAATGTTAGTTAACGATAAAGTATTTAAAATGTTTTATGATTTACGTTT
TTAAAACAACTTATATTTCAAGGGTAAATTATTCCGCTGTATTGCGCTGTATAACTCGTC
ACCGTTTGTTCTCTGCTTTACAACAGTGGGTTAAACCCATTAAAATGGTCCTTACGTTCA
GCATATGCCCGCTACTAGGCTGCAGCACATCTTTCTTTCTGTTCCCTTTAAGTAGTTTCT
CTTTCACTTTTTCATTTTATTTTTCTTCGCCTTTCAAACCCTGTATTGTATATTTAACAA
CAGGCATCTATCAAGTTTTCTTTATTTATTTTCGCAAAAGGAATCGTCATTTTGTATGTT
CTTTATTCAAAG
| PANTHER |
Thrombospondin (IPR037349) - T[1-130] 0.0 - T[161-655] 0.0 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[1-37] 0.94 - T[38-95] 5.2E-5 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[38-77] 5.7E-7 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[166-260] 2.3E-17 - T[261-322] 1.2E-17 - T[323-443] 2.8E-46 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[179-215] 11.034 - T[216-251] 16.78 - T[274-309] 15.442 - T[310-332] 12.949 - T[333-370] 14.998 - T[371-406] 16.89 - T[407-442] 16.057 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[179-272] 1.26E-9 - T[260-322] 6.28E-11 - T[320-440] 2.35E-37 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[216-251] 2.8E-9 - T[275-309] 9.5E-9 - T[311-332] 5.1E-4 - T[334-370] 3.1E-13 - T[372-406] 4.1E-9 - T[408-439] 4.7E-10 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[443-655] 1.58E-99 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[446-655] 94.71 |
| Pfam |
Thrombospondin_C (IPR008859) - T[460-655] 1.5E-91 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 62.5 % | 766 | 0 |
| TSP2_HUMAN | 59.299 % | 713 | 0 |
| TSP3_HUMAN | 51.121 % | 574 | 0 |