- Transcript 'Cisavi.CG.ENS81.R166...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R166.467184-485667.11504.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
R166 [467,505 / 477,608]
Amino acid sequence
Length: 660
>Cisavi.CG.ENS81.R166.467184-485667.11504.p
CLSSPCYSGVECTSYDDGSFICGECPTGTQGDGITCRDIDECALVADACFHYQGTHRCQN
QFPGYSCLPCPSGYKGNVESGVGVNYARAHKQVCVLSNPCTDGENPCPENSDCIFLGKTV
HPPFTCKVKTRLNLGKTLLLSEQAQVAYLPREDFQHKQNSKRGSTCCRPGYASCSKCDTL
VCSDDKDSDGWADVQITCQSNNTEVTCKKDNCIKTPNSGQEDADEDGQGDACDRDDDNDN
IYDEQDNCQFIYNPTQSDVDRDAGDMCDNCVHDRNADQHDTDGNGQGDACSIDIDGDSIE
NDFDNCVYVYNFDQVDSDNDGVGDACDNCPLVHNPTQNDRDSDKVGDACDSNLDIDEDGI
QNNLDNCPYIANSNQADHDNDGIGDACDNDDDDDGIPDNRDNCRLVVNPSQLDTDGNGRG
DACEGDFDGDNIPDAKDACPLNHQISVTDFRRFDMIPLDPKGVAQTDPKWVVRHRGKELI
QTKNCDPGLAIGMDRFQAVDFSGTFFVNTGKDDDYAGFVFGYQSSSKFYVVMWKQVSQTY
WESSPTLAHGYGALQVKVVNSTTGPGEALRNALWNTGDTQDQVRTLWYDDMHRGWKDFTA
YRWTLQHRPTTGYIRVTMYEGKDLLVDSGPMYDKTFAGGRLGFYIFSQEMVFFSDMDYMC
Nucleotide sequence
Length: 2,345
>Cisavi.CG.ENS81.R166.467184-485667.11504.t
TGTCTATCGAGCCCCTGCTATAGTGGAGTTGAGTGCACCTCGTACGACGATGGAAGTTTC
ATCTGCGGAGAATGCCCCACAGGCACTCAGGGAGATGGAATCACCTGCAGAGATATTGAC
GAGTGCGCTTTGGTCGCCGACGCGTGCTTCCATTACCAAGGTACACACCGCTGCCAGAAC
CAATTCCCCGGTTACTCGTGTCTACCATGCCCGTCTGGTTACAAAGGAAACGTCGAATCT
GGTGTAGGTGTGAACTACGCTCGAGCACATAAGCAAGTGTGTGTTTTATCGAACCCTTGC
ACGGATGGGGAAAACCCCTGCCCCGAGAACTCGGACTGCATTTTCCTTGGAAAGACGGTT
CACCCGCCATTCACATGCAAGGTAAAGACTCGCTTGAACTTGGGGAAAACACTCTTATTA
TCTGAACAGGCCCAAGTAGCGTACTTACCACGGGAAGATTTTCAACACAAACAAAATTCC
AAGCGTGGGTCGACGTGTTGTCGACCTGGTTATGCATCTTGCTCTAAATGCGATACTCTG
GTTTGTTCCGACGACAAAGACTCGGACGGTTGGGCTGACGTTCAGATTACGTGCCAGAGC
AATAACACAGAGGTTACCTGCAAAAAGGACAACTGCATAAAAACACCCAACAGCGGCCAG
GAAGACGCAGATGAAGACGGACAGGGCGATGCTTGCGACCGCGATGATGACAACGACAAC
ATATATGACGAACAGGACAACTGCCAGTTCATATACAACCCCACTCAATCTGACGTTGAC
CGAGACGCGGGTGACATGTGCGACAACTGCGTGCACGACAGGAACGCCGACCAGCACGAT
ACTGATGGGAACGGGCAGGGCGACGCCTGCTCCATTGACATAGATGGAGACTCAATTGAA
AACGACTTTGACAACTGCGTCTACGTTTACAACTTCGATCAGGTTGACAGTGACAACGAT
GGAGTCGGGGACGCCTGTGACAATTGTCCATTAGTTCACAACCCCACACAGAACGATCGT
GATTCCGATAAAGTAGGCGACGCTTGCGATTCGAACCTTGATATCGACGAAGACGGAATC
CAGAACAACCTAGACAACTGTCCCTACATCGCCAATTCAAATCAAGCTGATCACGATAAC
GACGGTATAGGTGATGCCTGTGATAACGACGATGATGATGATGGTATTCCTGACAACCGT
GACAACTGCAGACTTGTGGTCAACCCAAGCCAACTAGATACTGATGGAAACGGTAGAGGC
GACGCGTGTGAAGGCGACTTCGACGGTGACAATATCCCGGACGCAAAAGACGCTTGTCCT
CTTAACCATCAGATCAGCGTCACCGATTTCCGACGGTTCGACATGATCCCGCTTGACCCC
AAGGGCGTTGCACAGACTGATCCAAAGTGGGTCGTGAGACATAGAGGGAAGGAATTGATC
CAAACCAAAAACTGCGACCCAGGCCTGGCAATAGGCATGGACCGGTTTCAAGCGGTCGAT
TTCAGCGGAACATTCTTTGTCAATACTGGAAAGGACGACGATTACGCAGGATTCGTATTC
GGCTACCAGTCTTCGAGCAAATTCTACGTTGTGATGTGGAAGCAAGTGTCACAGACCTAC
TGGGAGAGCAGCCCGACTTTAGCCCATGGATACGGTGCTTTGCAAGTCAAGGTTGTTAAT
TCTACCACCGGACCGGGAGAGGCATTGAGAAACGCTTTGTGGAATACCGGCGATACACAA
GACCAGGTCCGCACGTTGTGGTATGACGATATGCACCGGGGATGGAAAGATTTCACAGCT
TACCGCTGGACACTTCAGCATAGACCAACCACGGGTTACATCAGGGTTACTATGTACGAA
GGCAAGGACCTGCTGGTGGACTCTGGGCCGATGTACGACAAAACATTCGCTGGCGGTCGG
CTCGGTTTCTACATTTTCTCACAGGAAATGGTCTTCTTTTCCGACATGGACTACATGTGC
AAAGACACATAGAGGCGCTATAACTGTGACATGACGCAAGCAAAACGTTCAAAAATGAGG
ACTTGGCGCCAAAGAATGAGCCGGTGCTGCTTCTAAACAAGATAAACTCGTTTCTTGCCT
GTTTCTTGTGTTTTTGCTTTTAATTCTATCGTAAAACTGCCATAACTAGCGAAGAATCGC
TTGATGTTTTTATACTAGGCCAAAGCTTCTCTACAGTGGTGACCCCGACGGATTTTATTT
CTCGTTTCCACTGTATTGTACAAGTTGTAATGATTTGTAAACCTTTAAATCGTTACGCTG
CACCACACAGCACTGCAGTTTATGTTAAATGTTAGTTAACGATAAAGTATTTAAAATGTT
TTATG
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[1-37] 0.94 - T[38-95] 5.2E-5 |
| PANTHER |
Thrombospondin (IPR037349) - T[1-130] 0.0 - T[166-660] 0.0 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[38-77] 5.8E-7 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[171-265] 2.3E-17 - T[266-326] 1.6E-17 - T[327-448] 2.8E-46 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[184-277] 1.2E-9 - T[266-327] 2.48E-11 - T[325-445] 2.35E-37 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[184-220] 11.034 - T[221-256] 16.78 - T[279-314] 15.442 - T[315-337] 12.949 - T[338-375] 14.998 - T[376-411] 16.89 - T[412-447] 16.057 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[221-256] 2.8E-9 - T[280-314] 9.6E-9 - T[316-337] 5.2E-4 - T[339-375] 3.2E-13 - T[377-411] 4.1E-9 - T[413-444] 4.8E-10 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[448-660] 1.58E-99 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[451-660] 94.71 |
| Pfam |
Thrombospondin_C (IPR008859) - T[465-660] 1.6E-91 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 62.027 % | 766 | 0 |
| TSP2_HUMAN | 58.85 % | 714 | 0 |
| TSP3_HUMAN | 50.969 % | 573 | 0 |