- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'Cisavi.CG.ENS81.R166...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R166.467184-485667.11505.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
R166 [467,853 / 485,667]
Amino acid sequence
Length: 1,175
>Cisavi.CG.ENS81.R166.467184-485667.11505.p
MRIVWILGVLGVLATVEAIGLQSGGTAFDLFTMTGIAQRRNEVHLRRSITTDGTSPDHFF
PAYKFKKPLPRNTLVASDDQFRLLSASLARVDRFFFSANIKQRVNNVGTIVSVTRKTGRG
QPVNTMSIVSDAPEDSLELNYGVGELKHVLSFRNVGIANPLKKWKNVTLEVVGDQVSLYV
NCRNIGTKRLVGEFYRHFDAQNSQVNLATSHQNKQDFKGSLQNVRFRVGLRSDSISMLCD
ATPSSSAPGNVESNRSEYEPEFDVAPARSNQRPATPYPGASPLPASNTLARQFVLSVIEE
SCDISCHATLGAHRPDDLQAFFSCQDATGMHGNGEQWKVNDCLSCVCDAGHRLCTNQTCP
PLHCANTTRIPGECCPKCEGPHEGFSPWSSWSECSVTCGIGSQARGRSCDRANFPCDGPT
LETQNCLRDPCRRRRDGGWSFWTTWAPCSVTCGKGRKTRIRECNSPVPEFDGDTCLGADR
QTRDCKSSPCPVNGGWGTWSPYSRCTVSCGTGFHSRKRRCNNPKPRYGGKACPGDKREIS
ECNAQSCPVDGCLSSPCYSGVECTSYDDGSFICGECPTGTQGDGITCRDIDECALVADAC
FHYQGTHRCQNQFPGYSCLPCPSGYKGNVESGVGVNYARAHKQVCVLSNPCTDGENPCPE
NSDCIFLGKTVHPPFTCKCRPGYASCSKCDTLVCSDDKDSDGWADVQITCQSNNTEVTCK
KDNCIKTPNSGQEDADEDGQGDACDRDDDNDNIYDEQDNCQFIYNPTQSDVDRDVGDMCD
NCVHDRNADQHDTDGNGQGDACSIDIDGDSIENDFDNCVYVYNFDQVDSDNDGVGDACDN
CPLVHNPTQNDRDSDKVGDACDSNLDIDEDGIQNNLDNCPYIANSNQADHDNDGIGDACD
NDDDDDGIPDNRDNCRLVVNPSQLDTDGNGRGDACEGDFDGDNIPDAKDACPLNHQISVT
DFRRFDMIPLDPKGVAQTDPKWVVRHRGKELIQTKNCDPGLAIGMDRFQAVDFSGTFFVN
TGKDDDYAGFVFGYQSSSKFYVVMWKQVSQTYWESSPTLAHGYGALQVKVVNSTTGPGEA
LRNALWNTGDTQDQVRTLWYDDMHRGWKDFTAYRWTLQHRPTTGYIRVTMYEGKDLLVDS
GPMYDKTFAGGRLGFYIFSQEMVFFSDMDYMCKDT
Nucleotide sequence
Length: 3,533
>Cisavi.CG.ENS81.R166.467184-485667.11505.t
ATGAGAATTGTTTGGATTCTCGGTGTGCTCGGGGTGCTGGCGACAGTAGAAGCAATTGGT
CTGCAAAGTGGTGGGACCGCTTTTGACCTCTTTACCATGACCGGTATCGCGCAAAGACGA
AATGAGGTTCACTTAAGACGCTCCATAACAACGGATGGGACGAGTCCTGATCACTTCTTC
CCCGCCTACAAATTCAAGAAGCCTCTTCCTCGGAACACTCTTGTCGCATCCGATGACCAG
TTTCGCCTCCTCTCTGCATCTCTGGCGCGGGTAGACAGGTTCTTCTTCAGCGCTAATATA
AAACAGCGCGTCAACAACGTCGGGACGATCGTCAGCGTCACGAGAAAGACGGGGAGAGGC
CAACCTGTCAACACAATGTCCATTGTAAGCGACGCCCCCGAAGACTCACTTGAACTTAAC
TACGGCGTCGGAGAATTAAAGCATGTGCTCAGCTTTAGGAACGTCGGCATCGCGAATCCA
TTAAAGAAATGGAAAAACGTGACGCTGGAAGTTGTGGGCGATCAAGTTTCTCTGTATGTG
AACTGCAGAAACATTGGGACCAAGCGGTTAGTGGGGGAGTTCTATCGACACTTCGACGCT
CAAAATAGCCAAGTCAATCTCGCAACCTCCCATCAAAACAAGCAGGATTTTAAGGGCTCC
CTTCAAAATGTTCGATTCCGTGTCGGTTTAAGGTCGGATTCAATCTCTATGTTATGTGAT
GCTACCCCTTCCTCCAGCGCTCCAGGCAACGTAGAAAGCAACCGTTCTGAGTACGAACCG
GAATTCGACGTCGCTCCAGCGAGGAGCAACCAACGCCCTGCAACCCCGTATCCCGGAGCA
TCACCCCTCCCGGCTAGCAACACCCTCGCCCGGCAGTTCGTTCTCTCAGTCATCGAGGAA
TCGTGCGACATTTCGTGCCACGCCACCCTTGGCGCCCACCGACCAGATGACCTCCAGGCT
TTCTTCTCGTGCCAGGACGCGACTGGGATGCATGGCAACGGGGAACAATGGAAAGTCAAC
GATTGCTTATCCTGCGTTTGTGACGCCGGCCACCGACTCTGTACCAACCAAACCTGCCCA
CCACTTCATTGCGCCAACACAACAAGAATACCCGGAGAATGCTGCCCGAAATGCGAAGGT
CCTCATGAGGGGTTTTCCCCGTGGTCGAGCTGGTCAGAATGTAGCGTCACATGCGGAATT
GGTAGCCAAGCACGAGGAAGATCATGCGATAGAGCCAACTTTCCATGCGACGGTCCGACC
TTGGAGACCCAGAATTGTCTCAGAGATCCATGCAGACGGCGACGGGACGGCGGTTGGTCG
TTCTGGACAACATGGGCTCCCTGCAGTGTGACTTGTGGGAAGGGAAGGAAGACTAGAATC
CGAGAATGCAACTCCCCAGTCCCCGAATTCGATGGCGATACCTGCCTCGGAGCTGACAGA
CAAACGAGGGACTGCAAGTCGTCACCCTGTCCAGTAAACGGGGGTTGGGGTACCTGGTCA
CCCTATTCACGATGCACGGTCTCCTGTGGCACCGGCTTTCATTCACGAAAACGCAGATGC
AACAACCCGAAACCAAGATACGGAGGAAAGGCTTGTCCTGGCGATAAGAGAGAGATCAGC
GAATGTAACGCCCAGAGCTGTCCAGTCGATGGCTGTCTATCGAGCCCCTGCTATAGTGGA
GTTGAGTGCACCTCGTACGACGATGGAAGTTTCATCTGCGGAGAATGCCCCACAGGCACT
CAGGGAGATGGAATCACCTGCAGAGATATTGACGAGTGCGCTTTGGTCGCCGACGCGTGC
TTCCATTACCAAGGTACACACCGCTGCCAGAACCAATTCCCCGGTTACTCGTGTCTACCA
TGCCCGTCTGGTTACAAAGGAAACGTCGAATCTGGTGTAGGTGTGAACTACGCTCGAGCA
CATAAGCAAGTGTGTGTTTTATCGAACCCTTGCACGGATGGGGAAAACCCCTGCCCCGAG
AACTCGGACTGCATTTTCCTTGGAAAGACGGTTCACCCGCCATTCACATGCAAGTGTCGA
CCTGGTTATGCATCTTGCTCTAAATGCGATACTCTGGTTTGTTCCGACGACAAAGACTCG
GACGGTTGGGCTGACGTTCAGATTACGTGCCAGAGCAATAACACAGAGGTTACCTGCAAA
AAGGACAACTGCATAAAAACACCCAACAGCGGCCAGGAAGACGCAGATGAAGACGGACAG
GGCGATGCTTGCGACCGCGATGATGACAACGACAACATATATGACGAACAGGACAACTGC
CAGTTCATATACAACCCCACTCAATCTGACGTTGACCGAGACGTGGGTGACATGTGCGAC
AACTGCGTGCACGACAGGAACGCCGACCAGCACGATACTGATGGGAACGGGCAGGGCGAC
GCCTGCTCCATTGACATAGATGGAGACTCAATTGAAAACGACTTTGACAACTGCGTCTAC
GTTTACAACTTCGATCAGGTTGACAGTGACAACGATGGAGTCGGGGACGCCTGTGACAAT
TGTCCATTAGTTCACAACCCCACACAGAACGATCGTGATTCCGATAAAGTAGGCGACGCT
TGCGATTCGAACCTTGATATCGACGAAGACGGAATCCAGAACAACCTAGACAACTGTCCC
TACATCGCCAATTCAAATCAAGCTGATCACGATAACGACGGTATAGGTGATGCCTGTGAT
AACGACGATGATGATGATGGTATTCCTGACAACCGTGACAACTGCAGACTTGTGGTCAAC
CCAAGCCAACTAGATACTGATGGAAACGGTAGAGGCGACGCGTGTGAAGGCGACTTCGAC
GGTGACAATATCCCGGACGCAAAAGACGCTTGTCCTCTTAACCATCAGATCAGCGTCACC
GATTTCCGACGGTTCGACATGATCCCGCTTGACCCCAAGGGCGTTGCACAGACTGATCCA
AAGTGGGTCGTGAGACATAGAGGGAAGGAATTGATCCAAACCAAAAACTGCGACCCAGGC
CTGGCAATAGGCATGGACCGGTTTCAAGCGGTCGATTTCAGCGGAACATTCTTTGTCAAT
ACTGGAAAGGACGACGATTACGCAGGATTCGTATTCGGCTACCAGTCTTCGAGCAAATTC
TACGTTGTGATGTGGAAGCAAGTGTCACAGACCTACTGGGAGAGCAGCCCGACTTTAGCC
CATGGATACGGTGCTTTGCAAGTCAAGGTTGTTAATTCTACCACCGGACCGGGAGAGGCA
TTGAGAAACGCTTTGTGGAATACCGGCGATACACAAGACCAGGTCCGCACGTTGTGGTAT
GACGATATGCACCGGGGATGGAAAGATTTCACAGCTTACCGCTGGACACTTCAGCATAGA
CCAACCACGGGTTACATCAGGGTTACTATGTACGAAGGCAAGGACCTGCTGGTGGACTCT
GGGCCGATGTACGACAAAACATTCGCTGGCGGTCGGCTCGGTTTCTACATTTTCTCACAG
GAAATGGTCTTCTTTTCCGACATGGACTACATGTGCAAAGACACATAGAGGCG
| PANTHER |
Thrombospondin (IPR037349) - T[1-432] 0.0 - T[434-464] 0.0 - T[467-494] 0.0 - T[495-521] 0.0 - T[523-1173] 0.0 |
| SMART |
Laminin_G (IPR001791) - T[21-230] 3.5E-5 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[27-234] 5.07E-18 - T[960-1175] 3.64E-100 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[322-379] 11.19 |
| Pfam |
VWF_dom (IPR001007) - T[324-378] 3.1E-8 |
| SMART |
VWF_dom (IPR001007) - T[324-378] 2.9E-7 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[342-378] . |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[382-427] 5.1E-11 - T[435-490] 3.53E-13 - T[489-547] 2.75E-14 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[382-432] 12.106 - T[436-491] 13.68 - T[493-548] 13.432 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[382-431] 5.6E-11 - T[435-490] 2.1E-17 - T[491-547] 3.7E-18 |
| SMART |
TSP1_rpt (IPR000884) - T[385-432] 9.5E-12 - T[439-491] 2.5E-14 - T[496-548] 1.2E-12 |
| Pfam |
TSP1_rpt (IPR000884) - T[386-431] 1.6E-12 - T[440-490] 1.9E-13 - T[498-547] 6.2E-11 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[538-588] 0.35 - T[589-646] 5.2E-5 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[548-588] 7.589 - T[647-687] 9.236 |
| SMART |
EGF-like_dom (IPR000742) - T[551-588] 6.5 - T[592-646] 29.0 - T[650-690] 0.73 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[589-628] 1.1E-6 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[683-777] 1.6E-17 - T[778-839] 2.8E-17 - T[840-960] 6.4E-46 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[696-784] 1.96E-9 - T[775-839] 6.41E-11 - T[837-957] 5.62E-37 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[696-732] 11.034 - T[733-768] 16.78 - T[775-790] 6.607 - T[791-826] 15.442 - T[827-849] 12.949 - T[850-887] 14.998 - T[888-923] 16.89 - T[924-959] 16.057 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[733-768] 5.3E-9 - T[792-826] 1.6E-8 - T[828-849] 7.4E-4 - T[851-887] 6.2E-13 - T[889-923] 8.0E-9 - T[925-956] 9.3E-10 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[963-1175] 95.564 |
| Pfam |
Thrombospondin_C (IPR008859) - T[977-1174] 4.2E-92 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 50.547 % | 1095 | 0 |
| TSP2_HUMAN | 49.791 % | 1070 | 0 |
| TSP3_HUMAN | 50.893 % | 578 | 0 |