- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Cisavi.CG.ENS81.R17....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R17.1196036-1203351.12600.t
Possible name(s)
NR1H2; NR1H4; RARB
Gene model
Location
R17 [1,196,035 / 1,201,525]
Amino acid sequence
Length: 296
>Cisavi.CG.ENS81.R17.1196036-1203351.12600.p
MDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKRRSRKVKTISEDDETMDIVKLTNQ
QSPAPVVKPPPEKDETDRLAALVGKCFSVYRSNPEIVKRWECYYLEQHTKEVPNLCEIAT
AHVQVFVEYTKKLPGFMRLDSHDQIALLKGCVVQAMLLRNSCGYNRINRHLDLKRFVQDT
GLKEDNIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSDHTDRENQLTIDKYRDRYLAAL
SRYSEAREPRRPQILAKILSLLTEMRTLYHTHVKMVSDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,156
>Cisavi.CG.ENS81.R17.1196036-1203351.12600.t
ATGGACATGTACACAAGGCGCAAGTGTCCCGAATGTAGACTGCGGAAATGCAGAGCAGTT
GGGATGCTAGAAGAATGTCTGCTCACAGAGATTCAGTGCAAATCAAAAAGAAGAAGCCGA
AAAGTAAAAACCATAAGCGAAGACGACGAAACAATGGATATTGTCAAATTAACCAATCAA
CAGTCTCCAGCACCTGTTGTCAAACCTCCACCTGAAAAAGATGAAACTGACCGACTTGCT
GCCTTGGTTGGGAAATGTTTTTCAGTGTATCGATCCAATCCTGAGATTGTAAAGAGATGG
GAGTGCTACTACTTGGAGCAGCATACAAAAGAAGTTCCAAATTTGTGCGAAATAGCAACG
GCACATGTGCAAGTGTTTGTTGAGTATACAAAGAAATTACCAGGATTCATGAGATTGGAC
TCCCATGACCAAATTGCATTGTTAAAAGGTTGTGTGGTACAAGCAATGCTTTTAAGAAAT
TCATGCGGATATAACAGAATCAACAGACACCTGGACCTTAAACGTTTTGTTCAAGATACA
GGACTGAAGGAGGACAACATTAGGACACTCACTGATTTTTTTGACAATGTGGCTAAGCTG
CAGATGGATGAAACTGAATATGGCTTACTTATTGCTATCATTGTTTTTGATTCAGACCAC
ACAGACCGTGAGAACCAATTGACGATTGACAAATACAGAGATCGGTATTTGGCCGCGCTC
TCACGGTACAGTGAGGCACGCGAGCCTCGTCGGCCGCAAATCCTCGCCAAGATATTGTCC
TTGCTTACGGAAATGAGGACACTGTACCACACTCATGTTAAAATGGTGTCAGACTGGAAG
CAACGTGAACAACTCACGCCATTGTTATGCGAGATATGGGATATGCGGTGAACCTTTCGC
TTGCAAGCTAGAATGACCAGTTTCAAACATTAACCTCTGTTACCCGATTTTGAAATAGGG
TCATCTTTTAAAAGTTAACATTCAATGACGAATATACACAATGATGTGTGTAGAATTTTG
CACTTATCTATTGCTATTGTGGTTTTAAACTGCATTGAAATTGTGTGTAGTTTTTCATGT
TTATTAACTGCATCAATTGTAATATATGTATTGTTAGTACTTGAAAATGCTCATTTAAAC
AGTTTCCTTATATGCA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-54] 3.2E-5 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[18-28] 5.1E-20 - T[118-139] 5.1E-20 - T[139-155] 5.1E-20 - T[200-215] 5.1E-20 - T[257-274] 5.1E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[20-36] 3.1E-6 - T[115-136] 3.1E-6 - T[141-160] 3.1E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[106-294] 2.1E-47 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[111-272] 5.3E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[117-269] 5.5E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 32.903 % | 153 | 2.16E-43 |
| NR1H2_HUMAN | 32.487 % | 100 | 7.17E-24 |
| NR1H4_HUMAN | 38.924 % | 199 | 2.03E-60 |