- Transcript 'Cisavi.CG.ENS81.R17....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R17.1196036-1203351.12601.t
Possible name(s)
NR1H2; NR1H4; RARB
Gene model
Location
R17 [1,201,497 / 1,203,351]
Amino acid sequence
Length: 254
>Cisavi.CG.ENS81.R17.1196036-1203351.12601.p
MAYNCQHLHACSDCPSCYLQQPHSVISSINHPQGQTETSPSLYQRENGLNYNASPPPFFQ
QKSPAVSPPLFPRGSPMSYCTQSAPGSPYSNPNIQASPTLCSHAGTDRFQAEQRRASLPT
SSLPNGHGVSQNLMSTPDLDLISNVSSSSYDHSFSQKFPKHDTDIVKVQMQKKNDLRPKL
NQQTNGKTENQSRKRSASDMCQVCGDRASGYHYNALTCEGCKGFFRRSINRKESHYRCKY
GGICEMDMYTRRKC
Nucleotide sequence
Length: 893
>Cisavi.CG.ENS81.R17.1196036-1203351.12601.t
GTTTCCGACCAACCCGCTCTGCCCCAATCACAAAGTAGGTGTTCCGTACAGCAGCGCATT
TGGCCAACCGACCTCGGAAGGAAGTGTATCTTGCGCAGAATGCTTTTTGCACAATACATT
ATTGCAATCAATGGCTTATAACTGTCAACATCTGCATGCTTGCTCGGATTGCCCAAGTTG
CTACCTGCAACAACCGCACTCGGTGATTTCCTCTATAAATCACCCACAAGGACAAACCGA
AACATCACCATCACTGTATCAGAGAGAAAATGGACTTAACTATAACGCCTCTCCACCACC
ATTTTTCCAGCAAAAATCGCCCGCAGTGTCGCCACCACTATTCCCCAGGGGAAGTCCCAT
GAGCTATTGCACACAGAGCGCTCCTGGAAGTCCGTACAGTAACCCAAACATCCAGGCATC
TCCAACGCTATGTTCTCACGCAGGAACAGATCGATTTCAAGCAGAACAACGCAGAGCTTC
ACTCCCGACAAGTTCATTACCTAACGGACACGGTGTGAGCCAAAATTTAATGAGTACTCC
AGACTTGGACCTCATTTCGAACGTGAGCAGTTCGTCTTATGACCACAGTTTTTCGCAAAA
ATTTCCAAAACATGACACTGACATTGTCAAGGTGCAAATGCAAAAGAAAAATGATCTAAG
ACCTAAATTAAACCAACAAACTAATGGAAAAACAGAAAATCAGAGTCGAAAACGGAGTGC
CAGTGATATGTGTCAGGTTTGTGGGGACAGAGCGTCGGGTTACCATTACAATGCTCTTAC
TTGTGAAGGTTGCAAGGGATTTTTTCGACGCTCCATAAACCGCAAGGAGTCCCATTATAG
GTGTAAATACGGAGGAATATGTGAAATGGACATGTACACAAGGCGCAAGTGTC
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[185-254] 3.6E-20 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[198-254] 14.883 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[198-254] 3.2E-13 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[200-254] 1.6E-19 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[201-217] 2.1E-11 - T[217-232] 2.1E-11 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[201-227] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 62.295 % | 89.7 | 1.66E-20 |
| NR1H2_HUMAN | 61.404 % | 88.6 | 3.8E-20 |
| NR1H4_HUMAN | 74.138 % | 98.2 | 2.02E-23 |