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  1. Clone 'cilv040o21' > 
  2. Transcript 'Cisavi.CG.ENS81.R17....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R17.1741144-1785194.16428.t

Possible name(s)

DCHS1; DCHS2; FAT4

Gene model

Cisavi.CG.ENS81.R17.1741144-1785194

Location

R17 [1,754,460 / 1,785,062]

Sequences

Amino acid sequence

Length: 1,175

>Cisavi.CG.ENS81.R17.1741144-1785194.16428.p
EQNGYYITSEDSNPFMQYFDRGVVENQGIIKTIKKLDHETFSSFDIAVYDSVLNRYFEVR
IDVTDINDHAPEFRVSQLNLTISEASQIGAKYNLGTAVDPDSDPFNVQGYTIISGNEDKA
FRLNNRHINGQIYVDLIVNQTLNRELVSNYSFTVEAFDGDVPPKTGQLDVYIDISDVNDN
PPVFDFSRYTVRLSENEPVGRDVITLNATDQDIGQNAMLTYRIDRSQSDPGFIFEIESNS
GRIYLNKKLDFEQVVQHKLVVEARDEGSEPQVGSTVVIVEVTDVNDNEPQINVIFLDAGE
AKVSEGAEPGDYIARVSVSDQDLGELSQVNVSLEGGNGRFGLQTENNIIYLVCVKLKLDR
ETESLYHITLNAVDFGSPPQSATTSFTITVEDINDNPPRFPSDLIEIELSQSAFPGTFVT
QLQSTDADIGRNAEVTYRLDGSPQSLWLNINPHSGLITTARSLDSLTSPELQVTVWATDG
GTPALASNATLVIRLSDAVNSPPRFQSSSYAVSVPEDAAVGHCFLKVHATDPDSSVISYS
FVIGSLQDPPTNFQVNSSSGDVCVTSSLNRETTASYDLQIQATDQGGQWDRAPLVITIED
VNDNKPVFSPVSYVINVDRNADVGTPITKLTATDADDVTGSGYGRVTFVMTSGNDEALFA
LDTETGWLNHLLLQKPPVLNMIDVAAVDGGGLSSDVDASVVISIVDGSSTGGPVFTQARY
FFQASEADPKETLLGTISATANDGRAVTYFIRHDPPHSTWFSVRPTGDVIVRSPMDREIF
PSITFQVIASSGSPPIFGFAMVTVTISDVNDNPPHFISSSAGRLEPIIIPFSSLVGATLH
SVVAIDNDEGRNGQVKYRLQSDFFSIDSNTGVILLTSALPHQATNYSVTIEAYDQGQSPH
CSLKIFDLVLPKIQHSLKGSYLSLSEKYFKEGVMRPWYKVESTEGHSLITTNSTAKIAYY
LQSSSSAFIFSIFSNGSLYLIRGLDYETQDTYSFEVTDRSPTSPRFSTASARVIVRDVND
NSPRFVGHHMTYVAEDEPIGYPAMRLAAEDADAGVNGRVMYAIDSESAAFVIDPNNEVIS
LAMELDRENKSSYRLTVFAQDSAFPSLYDWCFVLVTVVDVNDNAPQFSPLDGSIVPPLLS
RLEIPEHIEGPQVVHTIAARDADIGENGQITYAIS

Nucleotide sequence

Length: 3,525

>Cisavi.CG.ENS81.R17.1741144-1785194.16428.t
GAGCAAAATGGATATTATATTACATCAGAAGACAGTAACCCCTTTATGCAGTATTTTGAC
CGTGGTGTAGTGGAAAACCAAGGGATTATAAAAACCATTAAAAAGCTTGATCACGAAACT
TTCAGTTCTTTTGATATAGCAGTATATGACAGTGTTTTAAACAGATATTTTGAGGTACGA
ATTGATGTAACAGACATAAATGATCATGCTCCAGAATTTCGAGTCAGTCAATTGAATCTT
ACAATTTCCGAAGCAAGTCAAATTGGGGCCAAGTACAACTTGGGCACCGCTGTTGATCCA
GACTCAGACCCGTTTAATGTACAAGGATATACAATCATATCTGGTAATGAGGACAAAGCA
TTCAGGTTGAACAACAGACACATTAATGGACAAATCTATGTGGATTTAATAGTGAACCAG
ACATTAAACCGGGAGCTTGTGTCCAACTATTCCTTTACAGTTGAGGCATTCGATGGAGAT
GTTCCACCAAAAACTGGCCAGCTTGACGTTTACATTGATATCTCAGATGTTAACGACAAT
CCCCCTGTATTTGACTTCAGCAGATACACAGTCAGGTTATCAGAAAATGAACCAGTGGGT
AGAGATGTAATTACACTCAATGCAACCGACCAAGACATTGGTCAAAATGCCATGTTGACC
TACCGCATTGACCGTAGCCAAAGTGACCCTGGTTTCATCTTTGAGATTGAAAGTAACAGC
GGACGGATATATCTCAACAAAAAACTTGACTTTGAGCAGGTGGTGCAGCACAAACTGGTA
GTTGAAGCCAGAGACGAAGGTTCGGAACCACAAGTTGGATCTACTGTGGTCATTGTTGAA
GTAACGGATGTAAATGACAACGAACCTCAAATTAATGTGATTTTCTTGGATGCAGGTGAA
GCAAAGGTGTCTGAAGGGGCAGAGCCAGGTGATTATATTGCTCGCGTGTCGGTTTCAGAC
CAGGATCTCGGCGAACTTAGCCAAGTTAACGTCTCTCTGGAGGGTGGAAATGGAAGGTTC
GGACTGCAGACAGAAAACAACATTATATATCTGGTTTGCGTGAAGCTCAAGTTAGACAGA
GAAACAGAATCATTGTATCACATTACCTTGAATGCCGTTGATTTTGGCAGTCCACCCCAG
TCGGCGACGACATCGTTCACAATAACAGTGGAAGATATCAACGACAATCCGCCGCGCTTT
CCCAGTGATTTGATCGAGATTGAACTCTCCCAAAGCGCTTTCCCCGGCACTTTCGTTACC
CAGCTTCAATCCACGGACGCCGACATAGGACGCAACGCAGAAGTCACATACAGATTAGAT
GGCTCCCCGCAAAGTCTGTGGCTCAACATTAATCCGCACTCGGGACTGATCACGACCGCA
CGGAGTTTGGATAGTTTGACCAGTCCGGAGTTACAAGTGACGGTGTGGGCCACTGACGGA
GGGACGCCCGCATTGGCATCGAACGCAACTCTGGTGATTCGACTTAGTGATGCTGTGAAC
TCTCCGCCTCGCTTCCAATCTTCCTCCTACGCTGTATCCGTGCCGGAGGATGCTGCCGTC
GGTCACTGCTTCTTGAAGGTTCACGCTACGGATCCCGATTCTAGTGTAATCTCATACTCC
TTCGTGATTGGCTCGTTGCAAGATCCGCCCACCAACTTCCAAGTGAACTCCAGTAGCGGA
GATGTTTGTGTGACTTCTTCTCTAAACAGGGAAACCACCGCGAGTTACGATCTTCAGATC
CAGGCCACTGATCAGGGTGGGCAGTGGGACAGAGCGCCACTAGTGATTACCATTGAAGAT
GTAAACGACAACAAACCCGTCTTCAGTCCCGTTTCTTACGTCATAAACGTGGATAGAAAC
GCTGACGTCGGAACTCCGATCACAAAGCTCACTGCCACTGACGCCGATGACGTCACAGGG
AGCGGTTACGGTCGGGTGACGTTCGTAATGACGTCAGGGAACGATGAAGCGCTGTTTGCA
CTTGATACTGAAACAGGTTGGTTAAATCATCTGCTTTTACAAAAGCCCCCTGTCCTTAAT
ATGATTGATGTAGCAGCTGTTGATGGGGGAGGACTTTCATCTGATGTGGATGCCTCTGTG
GTGATCAGCATCGTGGATGGGAGCAGCACTGGAGGACCAGTCTTCACACAAGCAAGATAT
TTCTTTCAAGCATCGGAAGCTGACCCAAAAGAAACATTGCTTGGCACAATCTCAGCTACT
GCCAATGATGGCAGAGCAGTGACGTACTTTATACGACATGATCCTCCACACAGCACTTGG
TTCTCTGTGCGTCCAACCGGTGATGTCATAGTTCGGTCACCAATGGATAGAGAAATTTTC
CCATCCATTACCTTTCAGGTCATTGCATCATCAGGGTCTCCTCCTATTTTTGGCTTTGCC
ATGGTAACAGTGACGATATCCGACGTCAACGACAACCCACCTCATTTTATATCCAGCTCC
GCCGGTAGATTGGAGCCGATCATTATTCCATTCTCCTCATTGGTTGGTGCCACGCTGCAC
TCTGTGGTTGCTATTGACAACGATGAGGGTAGAAATGGCCAGGTGAAATACCGTCTACAA
TCTGATTTTTTCTCCATTGACTCAAACACAGGCGTCATATTGCTCACAAGTGCACTTCCC
CATCAGGCCACCAATTATAGTGTGACCATAGAGGCATATGACCAAGGGCAATCCCCACAC
TGTTCCCTGAAGATTTTCGATTTAGTGTTGCCGAAGATACAGCACTCTCTAAAAGGTAGT
TATTTAAGCTTATCTGAAAAATATTTTAAAGAGGGGGTAATGAGGCCATGGTATAAAGTT
GAGTCAACTGAGGGACATAGCCTGATTACAACCAACAGCACAGCAAAGATAGCTTACTAC
CTTCAATCGAGCTCCTCTGCTTTTATATTCTCCATCTTCTCCAATGGATCACTCTATCTT
ATCCGAGGCTTGGATTATGAAACACAAGACACATATTCATTTGAGGTGACTGACCGCTCC
CCTACTTCCCCACGCTTTTCCACTGCATCAGCTCGTGTAATCGTCCGTGACGTGAATGAC
AACTCGCCGCGATTCGTTGGACATCACATGACCTACGTAGCGGAGGATGAACCAATAGGA
TACCCGGCCATGAGGCTTGCTGCAGAGGACGCAGACGCAGGAGTCAATGGTCGTGTGATG
TACGCGATTGATTCAGAGAGTGCAGCTTTTGTGATAGACCCAAATAATGAAGTGATAAGT
CTGGCAATGGAGTTGGACAGAGAAAACAAATCCAGCTACAGGCTTACAGTGTTCGCACAA
GACAGCGCCTTCCCATCATTATACGACTGGTGCTTTGTGCTCGTCACTGTCGTTGACGTC
AATGACAATGCGCCTCAGTTCTCACCACTCGACGGCAGCATAGTGCCGCCATTATTGTCA
AGACTGGAGATACCGGAGCACATAGAAGGGCCGCAGGTGGTGCACACAATAGCTGCACGT
GACGCTGACATTGGGGAAAATGGCCAAATCACTTATGCCATTTCA

InterProScan

SMART
Cadherin (IPR002126) - T[5-71] 1.1 - T[95-182] 6.4E-15 - T[206-289] 8.3E-27 - T[316-398] 2.0E-19 - T[422-503] 3.1E-16 - T[527-606] 1.4E-22 - T[630-710] 0.12 - T[737-814] 1.1E-12 - T[842-911] 1.0E-6 - T[948-1023] 6.1E-8 - T[1046-1125] 6.6E-26
SUPERFAMILY
Cadherin-like (IPR015919) - T[66-176] 2.57E-18 - T[172-293] 1.21E-29 - T[284-392] 1.83E-17 - T[388-497] 5.63E-25 - T[501-608] 3.66E-22 - T[601-706] 3.4E-14 - T[712-834] 2.75E-18 - T[809-901] 4.97E-14 - T[954-1025] 8.57E-9 - T[1013-1138] 3.14E-26 - T[1120-1174] 6.57E-6
Pfam
Cadherin (IPR002126) - T[80-174] 4.2E-10 - T[189-282] 9.5E-21 - T[301-391] 6.5E-15 - T[407-495] 3.1E-13 - T[510-598] 1.0E-14 - T[720-806] 3.7E-7 - T[834-899] 5.4E-8 - T[1033-1117] 1.7E-16
ProSitePatterns
Cadherin_CS (IPR020894) - T[172-182] . - T[388-398] . - T[596-606] . - T[804-814] . - T[1013-1023] . - T[1115-1125] .
PRINTS
Cadherin (IPR002126) - T[232-251] 9.5E-36 - T[505-534] 9.5E-36 - T[575-587] 9.5E-36 - T[587-606] 9.5E-36 - T[713-726] 9.5E-36 - T[974-1000] 9.5E-36 - T[1007-1024] 9.5E-36

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FAT4_HUMAN 31.799 % 450 2.8E-133
PCD16_HUMAN 35.128 % 643 0
CAD23_HUMAN 29.853 % 308 5.57E-86