- Clone 'cien31933' >
- Transcript 'Moocci.CG.ELv1_2.S39...' >
- Transcript 'Cisavi.CG.ENS81.R19....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R19.60521-67309.07191.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R19 [60,520 / 66,235]
Amino acid sequence
Length: 292
>Cisavi.CG.ENS81.R19.60521-67309.07191.p
MNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVS
CNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVFVGKFLTRSERVKKMGERVRQFT
NVYIKNFSDKLDEKALQAMFEPAFKYNQSVRNPTMAGYPQSGQPQSQQQTDPAMQQAVHV
QGQEPLTSSMLAAAQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLES
RESLKAKVEEAVAVLQAHQVKVAAATRRPANTTPAAAATEAPAPIAVGGGQE
Nucleotide sequence
Length: 1,265
>Cisavi.CG.ENS81.R19.60521-67309.07191.t
GCTGAGAGGGCATTGGACACTATGAATTATGACCCGATTAAAGGACGTCCAATTCGTATT
ATGTGGAGCCAACGTGACCCATCTCTTCGAAAATCTGGTGTTGGCAACATATTCATCAAG
AACTTGGATAAATCCATTGATAACAAGGCTCTTTATGATACTTTTTCAGCTTTCGGCAAT
ATTCTTTCTTGCAAAGTGTCTTGTAATGAGAATGGATCGAAAGGATACGGCTTTGTTCAT
TTTGAGACAGAGGAAGCTGGCTCTAGAGCTATTGAAAAGGTGAACGGTATGTTGTTGAAC
GACAAGAAAGTTTTCGTCGGAAAGTTTCTGACTCGCTCGGAGCGAGTGAAAAAGATGGGA
GAACGTGTTCGACAATTCACCAATGTCTACATTAAGAACTTCTCGGACAAACTTGATGAA
AAGGCTTTACAAGCCATGTTCGAGCCTGCATTCAAGTACAACCAAAGTGTGCGCAACCCA
ACGATGGCTGGATACCCACAATCTGGCCAACCTCAGTCCCAGCAACAGACCGACCCAGCC
ATGCAACAAGCTGTTCATGTACAAGGACAGGAACCACTAACATCGAGCATGTTGGCTGCT
GCACAACCTCAAGAGCAAAAACAAATGCTGGGCGAAAGGTTGTACCCGTTGATTGAGCAA
TCCCATCCCGATCTTGCATCGAAGATAACTGGAATGTTGCTGGAAATCGACAACTCTGAG
CTTCTTCACATGTTGGAGTCGCGTGAGTCGTTGAAAGCCAAGGTGGAGGAGGCAGTTGCT
GTTTTGCAAGCTCACCAGGTGAAAGTGGCGGCAGCTACACGCCGCCCTGCTAATACAACC
CCCGCTGCTGCTGCCACTGAAGCCCCAGCCCCGATAGCTGTGGGAGGTGGCCAGGAATAA
ATATTTTGCTGCTGTAAGTCTGACCGGCGTCTCAATCATTTCTTTTTGGCGTCTGCTTCA
TTTCAAAATTTCAAGAAAAAAAAATTGAAAAAAATGCTTTCATCCTGACAAAAATATAAA
TTCTAATTTCCTTTTGCTCATTTGAGCGGTTTACTTGTAAATATGTTTTAATTTGTGGTG
AAAACTTTCCCCTCTAAGTCCTTGCCTGCGACTGTATCAGAAATGTACAGAATATAGTCG
CATGTTCTTTAGTTGCATGTCCAGATATAAAATACACAAAAAAAATCGCAAAATAGTTGG
GACTTTTGATGCAAAATATTGTGATGGTATTTTCGTGTCGTATAATAAAACGTGAAGAAT
GTAAA
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[4-115] 6.71E-26 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[17-112] 4.5E-23 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[28-104] 15.835 |
| SMART |
RRM_dom (IPR000504) - T[29-100] 3.5E-20 |
| Pfam |
RRM_dom (IPR000504) - T[30-96] 5.6E-18 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[144-264] 3.27E-44 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[183-260] 22.181 |
| Pfam |
PABP_HYD (IPR002004) - T[189-255] 2.2E-30 |
| SMART |
PABP_HYD (IPR002004) - T[195-258] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 76.429 % | 245 | 1.15E-76 |
| PABP4_HUMAN | 74.286 % | 240 | 7.87E-75 |
| PABP3_HUMAN | 71.429 % | 229 | 1.21E-70 |