- Transcript 'Cisavi.CG.ENS81.R19....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R19.60521-67309.07192.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R19 [60,555 / 66,804]
Amino acid sequence
Length: 621
>Cisavi.CG.ENS81.R19.60521-67309.07192.p
MNSSGTATSYPMASLYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAYVN
FQQPADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT
FSAFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVFVGKFLTRSE
RVKKMGERVRQFTNVYIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFVAM
ETHEEAQIACEAMNGMEVEGNSCDVVRRRKQERQQELRGQYEAQKQERIQRFQGVNLYVK
NLDDNVTDDELREAFSTYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVG
TKPLYVALAQRREDRKAHLTAQYMQRMTSSMGIMGQPFQTAGGASGYFMPFQGAQRTYMQ
SQIIRATPRWQHNPQGSFQMAGDMRTVGPRAPTAPAIRPMTTPVGARGVIHPQHQMMHQQ
AMPQVTTFNTPAFKYNQSVRNPTMAGYPQSGQPQSQQQTDPAMQQAVHVQGQEPLTSSML
AAAQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEA
VAVLQAHQVKVAAATRRPANT
Nucleotide sequence
Length: 2,256
>Cisavi.CG.ENS81.R19.60521-67309.07192.t
ATGAACAGCTCGGGAACAGCAACTAGTTATCCAATGGCTTCACTTTACGTGGGGGATTTG
CATCTTGACGTGACGGAGGCCATGTTGTACGAGAAGTTCTCAGCAGCTGGACCGGTGCTA
TCTATCAGAGTGTGCAGGGATGTTATCACTCGTCGATCATTGGGTTATGCTTACGTCAAC
TTTCAGCAGCCAGCAGATGCTGAGAGGGCATTGGACACTATGAATTATGACCCGATTAAA
GGACGTCCAATTCGTATTATGTGGAGCCAACGTGACCCATCTCTTCGAAAATCTGGTGTT
GGCAACATATTCATCAAGAACTTGGATAAATCCATTGATAACAAGGCTCTTTATGATACT
TTTTCAGCTTTCGGCAATATTCTTTCTTGCAAAGTGTCTTGTAATGAGAATGGATCGAAA
GGATACGGCTTTGTTCATTTTGAGACAGAGGAAGCTGGCTCTAGAGCTATTGAAAAGGTG
AACGGTATGTTGTTGAACGACAAGAAAGTTTTCGTCGGAAAGTTTCTGACTCGCTCGGAG
CGAGTGAAAAAGATGGGAGAACGTGTTCGACAATTCACCAATGTCTACATTAAGAACTTC
TCGGACAAACTTGATGAAAAGGCTTTACAAGCCATGTTCGAGCAACACGGAGTTGTGAAG
AGCGTTGCGGTGATGCGCGATCGGGACGGGAACTCACGGGGATTCGGGTTTGTAGCCATG
GAGACCCATGAGGAGGCACAGATAGCGTGTGAAGCAATGAATGGAATGGAAGTCGAAGGT
AATTCATGTGATGTGGTTCGCAGAAGAAAACAGGAGCGGCAGCAAGAGCTTCGTGGTCAA
TATGAAGCTCAGAAGCAAGAACGCATCCAACGATTCCAAGGTGTCAACCTCTATGTGAAG
AACTTGGATGACAATGTGACTGATGATGAGTTGCGTGAAGCTTTCTCAACTTACGGGACG
ATCACAAGTGCAAAGATCATGTCTGATGGTGAGCGTTCGCGTGGGTTTGGTTTCGTTTGC
TTTAGTTCACCTGAAGAAGCCACAAAAGCCGTCACGGAAATGAACGGACGAATTGTTGGC
ACCAAACCATTGTATGTGGCTCTTGCACAACGCAGGGAGGATAGGAAGGCACATCTAACA
GCCCAGTACATGCAAAGAATGACTTCAAGCATGGGAATAATGGGTCAACCATTCCAAACA
GCCGGTGGCGCATCTGGTTATTTCATGCCATTCCAAGGTGCCCAGCGAACGTACATGCAG
AGTCAGATCATCCGTGCCACCCCAAGATGGCAGCATAACCCACAAGGAAGCTTCCAGATG
GCTGGGGACATGCGTACAGTTGGCCCCCGTGCTCCGACAGCCCCAGCAATCCGACCCATG
ACCACCCCAGTTGGGGCTCGTGGAGTTATTCACCCACAACACCAGATGATGCACCAACAA
GCCATGCCCCAGGTAACCACCTTCAACACCCCTGCATTCAAGTACAACCAAAGTGTGCGC
AACCCAACGATGGCTGGATACCCACAATCTGGCCAACCTCAGTCCCAGCAACAGACCGAC
CCAGCCATGCAACAAGCTGTTCATGTACAAGGACAGGAACCACTAACATCGAGCATGTTG
GCTGCTGCACAACCTCAAGAGCAAAAACAAATGCTGGGCGAAAGGTTGTACCCGTTGATT
GAGCAATCCCATCCCGATCTTGCATCGAAGATAACTGGAATGTTGCTGGAAATCGACAAC
TCTGAGCTTCTTCACATGTTGGAGTCGCGTGAGTCGTTGAAAGCCAAGGTGGAGGAGGCA
GTTGCTGTTTTGCAAGCTCACCAGGTGAAAGTGGCGGCAGCTACACGCCGCCCTGCTAAT
ACAACCCCCGCTGCTGCTGCCACTGAAGCCCCAGCCCCGATAGCTGTGGGAGGTGGCCAG
GAATAAATATTTTGCTGCTGTAAGTCTGACCGGCGTCTCAATCATTTCTTTTTGGCGTCT
GCTTCATTTCAAAATTTCAAGAAAAAAAAATTGAAAAAAATGCTTTCATCCTGACAAAAA
TATAAATTCTAATTTCCTTTTGCTCATTTGAGCGGTTTACTTGTAAATATGTTTTAATTT
GTGGTGAAAACTTTCCCCTCTAAGTCCTTGCCTGCGACTGTATCAGAAATGTACAGAATA
TAGTCGCATGTTCTTTAGTTGCATGTCCAGATATAAAATACACAAAAAAAATCGCAAAAT
AGTTGGGACTTTTGATGCAAAATATTGTGATGGTAT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-94] 1.4E-24 - T[95-180] 1.6E-22 - T[181-265] 3.0E-22 - T[266-383] 2.7E-30 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[12-178] 1.9E-46 - T[192-374] 3.92E-47 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[13-605] 8.2E-227 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[13-91] 17.472 - T[101-177] 15.835 - T[193-270] 16.347 - T[295-371] 19.741 |
| SMART |
RRM_dom (IPR000504) - T[14-87] 2.4E-21 - T[102-173] 3.5E-20 - T[194-266] 3.3E-23 - T[296-367] 2.6E-27 |
| Pfam |
RRM_dom (IPR000504) - T[15-85] 2.9E-19 - T[103-169] 1.8E-17 - T[195-262] 5.1E-17 - T[297-364] 7.6E-21 |
| SMART |
RRM_dom_euk (IPR003954) - T[102-173] 1.4 - T[296-367] 0.49 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[475-613] 7.46E-44 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[532-609] 22.181 |
| Pfam |
PABP_HYD (IPR002004) - T[538-604] 7.0E-30 |
| SMART |
PABP_HYD (IPR002004) - T[544-607] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 63.693 % | 770 | 0 |
| PABP4_HUMAN | 61.503 % | 759 | 0 |
| PABP3_HUMAN | 58.906 % | 704 | 0 |