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  1. Transcript 'Moocul.CG.ELv1_2.S44...'
  2. Transcript 'KH2012:KH.C1.513.v1....'
  3. Transcript 'KH2012:KH.S973.1.v1....'
  4. Transcript 'KH2012:KH.S516.2.v1....'
  5. Transcript 'Cisavi.CG.ENS81.R19....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R19.60521-67309.07193.t

Possible name(s)

PABPC1; PABPC3; PABPC4

Location

R19 [60,918 / 67,232]

Sequences

Amino acid sequence

Length: 580

>Cisavi.CG.ENS81.R19.60521-67309.07193.p
MTMNSSGTATSYPMASLYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAY
VNFQQPADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY
DTFSAFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVFVGKFLTR
SERVKKMGERVRQFTNVYIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFV
AMETHEEAQIACEAMNGMEVEGNSCDVVVYACLLAERQQELRGQYEAQKQERIQRFQGVN
LYVKNLDDNVTDDELREAFSTYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNG
RIVGTKPLYVALAQRREDRKAHLTAQYMQRMTSSMGVRMATVTPAIRPMTTPVGARGVIH
PQHQMMHQQAMPQVTTFNTPAFKYNQSVRNPTMAGYPQSGQPQSQQQTDPAMQQAVHVQG
QEPLTSSMLAAAQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRE
SLKAKVEEAVAVLQAHQVKVAAATRRPANTTPAAAATEAP

Nucleotide sequence

Length: 1,813

>Cisavi.CG.ENS81.R19.60521-67309.07193.t
CTCAAAAAAAGCATAAAATTTAAAAAACTTTTGTATTCAATTCTCTACAAGCGCGAAAGG
AATACTAAAAAAGATGACAATGAACAGCTCGGGAACAGCAACTAGTTATCCAATGGCTTC
ACTTTACGTGGGGGATTTGCATCTTGACGTGACGGAGGCCATGTTGTACGAGAAGTTCTC
AGCAGCTGGACCGGTGCTATCTATCAGAGTGTGCAGGGATGTTATCACTCGTCGATCATT
GGGTTATGCTTACGTCAACTTTCAGCAGCCAGCAGATGCTGAGAGGGCATTGGACACTAT
GAATTATGACCCGATTAAAGGACGTCCAATTCGTATTATGTGGAGCCAACGTGACCCATC
TCTTCGAAAATCTGGTGTTGGCAACATATTCATCAAGAACTTGGATAAATCCATTGATAA
CAAGGCTCTTTATGATACTTTTTCAGCTTTCGGCAATATTCTTTCTTGCAAAGTGTCTTG
TAATGAGAATGGATCGAAAGGATACGGCTTTGTTCATTTTGAGACAGAGGAAGCTGGCTC
TAGAGCTATTGAAAAGGTGAACGGTATGTTGTTGAACGACAAGAAAGTTTTCGTCGGAAA
GTTTCTGACTCGCTCGGAGCGAGTGAAAAAGATGGGAGAACGTGTTCGACAATTCACCAA
TGTCTACATTAAGAACTTCTCGGACAAACTTGATGAAAAGGCTTTACAAGCCATGTTCGA
GCAACACGGAGTTGTGAAGAGCGTTGCGGTGATGCGCGATCGGGACGGGAACTCACGGGG
ATTCGGGTTTGTAGCCATGGAGACCCATGAGGAGGCACAGATAGCGTGTGAAGCAATGAA
TGGAATGGAAGTCGAAGGTAATTCATGTGATGTGGTTGTCTATGCTTGTTTATTGGCGGA
GCGGCAGCAAGAGCTTCGTGGTCAATATGAAGCTCAGAAGCAAGAACGCATCCAACGATT
CCAAGGTGTCAACCTCTATGTGAAGAACTTGGATGACAATGTGACTGATGATGAGTTGCG
TGAAGCTTTCTCAACTTACGGGACGATCACAAGTGCAAAGATCATGTCTGATGGTGAGCG
TTCGCGTGGGTTTGGTTTCGTTTGCTTTAGTTCACCTGAAGAAGCCACAAAAGCCGTCAC
GGAAATGAACGGACGAATTGTTGGCACCAAACCATTGTATGTGGCTCTTGCACAACGCAG
GGAGGATAGGAAGGCACATCTAACAGCCCAGTACATGCAAAGAATGACTTCAAGCATGGG
AGTTAGAATGGCAACGGTAACCCCAGCAATCCGACCCATGACCACCCCAGTTGGGGCTCG
TGGAGTTATTCACCCACAACACCAGATGATGCACCAACAAGCCATGCCCCAGGTAACCAC
CTTCAACACCCCTGCATTCAAGTACAACCAAAGTGTGCGCAACCCAACGATGGCTGGATA
CCCACAATCTGGCCAACCTCAGTCCCAGCAACAGACCGACCCAGCCATGCAACAAGCTGT
TCATGTACAAGGACAGGAACCACTAACATCGAGCATGTTGGCTGCTGCACAACCTCAAGA
GCAAAAACAAATGCTGGGCGAAAGGTTGTACCCGTTGATTGAGCAATCCCATCCCGATCT
TGCATCGAAGATAACTGGAATGTTGCTGGAAATCGACAACTCTGAGCTTCTTCACATGTT
GGAGTCGCGTGAGTCGTTGAAAGCCAAGGTGGAGGAGGCAGTTGCTGTTTTGCAAGCTCA
CCAGGTGAAAGTGGCGGCAGCTACACGCCGCCCTGCTAATACAACCCCCGCTGCTGCTGC
CACTGAAGCCCCA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-96] 1.2E-24 - T[97-182] 1.4E-22 - T[183-269] 2.4E-22 - T[274-387] 1.9E-29
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[14-180] 1.7E-46 - T[188-268] 5.1E-22 - T[297-381] 4.3E-28
TIGRFAM
PABP_1234 (IPR006515) - T[15-473] 1.5E-187
ProSiteProfiles
RRM_dom (IPR000504) - T[15-93] 17.472 - T[103-179] 15.835 - T[195-267] 15.869 - T[299-375] 19.741
SMART
RRM_dom (IPR000504) - T[16-89] 2.4E-21 - T[104-175] 3.5E-20 - T[196-268] 3.3E-23 - T[300-371] 2.6E-27
Pfam
RRM_dom (IPR000504) - T[17-87] 2.7E-19 - T[105-171] 1.6E-17 - T[197-264] 4.7E-17 - T[301-368] 6.9E-21
SMART
RRM_dom_euk (IPR003954) - T[104-175] 1.4 - T[300-371] 0.49
SUPERFAMILY
PABP-dom (IPR036053) - T[424-562] 7.06E-44
ProSiteProfiles
PABP_HYD (IPR002004) - T[481-558] 22.181
Pfam
PABP_HYD (IPR002004) - T[487-553] 6.3E-30
SMART
PABP_HYD (IPR002004) - T[493-556] 1.4E-38

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PABP1_HUMAN 71.642 % 607 0
PABP4_HUMAN 63.214 % 603 0
PAP1L_HUMAN 69.289 % 574 0





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